MS012219 (gene) Bitter gourd (TR) v1

Overview


Name	MS012219
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Location	scaffold797: 525736 .. 525981 (-)
RNA-Seq Expression	MS012219
Synteny	MS012219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGGCAATGCTATTGGGGTGTGTGAGGATGTTGACTGTGATTCTGACGAGTATTGTTTGGGGGAAAGTCTGACTGTCAAAGTGAGATTTGACATAACAAAACCCTTGAGACGAGGTGTGAAGATCAATATTGATGGTCCTATGGGTAGCTGTTGGGTTCCAATCAAGTATGAGCGTTTACCAGATTTTTGTTATTTCTGTGGGATGATTGGCCATCTAGCTAAAACTTGTGATTCAAATGTTGAT

mRNA sequence

CTCGGCAATGCTATTGGGGTGTGTGAGGATGTTGACTGTGATTCTGACGAGTATTGTTTGGGGGAAAGTCTGACTGTCAAAGTGAGATTTGACATAACAAAACCCTTGAGACGAGGTGTGAAGATCAATATTGATGGTCCTATGGGTAGCTGTTGGGTTCCAATCAAGTATGAGCGTTTACCAGATTTTTGTTATTTCTGTGGGATGATTGGCCATCTAGCTAAAACTTGTGATTCAAATGTTGAT

Coding sequence (CDS)

CTCGGCAATGCTATTGGGGTGTGTGAGGATGTTGACTGTGATTCTGACGAGTATTGTTTGGGGGAAAGTCTGACTGTCAAAGTGAGATTTGACATAACAAAACCCTTGAGACGAGGTGTGAAGATCAATATTGATGGTCCTATGGGTAGCTGTTGGGTTCCAATCAAGTATGAGCGTTTACCAGATTTTTGTTATTTCTGTGGGATGATTGGCCATCTAGCTAAAACTTGTGATTCAAATGTTGAT

Protein sequence

LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMIGHLAKTCDSNVD

Homology

[Close]

BLAST of MS012219 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-26
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNAIG   DVDC+   +  G SL ++V  DITKPLRRG+KINIDGPMG CW+PI+YERL
Sbjct: 148 LGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

Query: 61  PDFCYFCGMIGHLAKTCDS 80
           PDFCYFCG+IGH +  CD+
Sbjct: 208 PDFCYFCGVIGHSSHDCDA 226

[Close]

BLAST of MS012219 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNAIG+ EDV+ +++ +C G  L V+VRFD+ KPL RG+K+N+DGPMG CW+PI+YERL
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 61  PDFCYFCGMIGHLAKTC 78
           PDF Y CG + H+ K C
Sbjct: 209 PDFRYHCGRLDHILKDC 225

[Close]

BLAST of MS012219 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNA+G  E+ DCD      G +L V+V  DI+KPLRRG+K+N+DGP+G  W+PI+YERL
Sbjct: 149 LGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERL 208

Query: 61  PDFCYFCGM 70
           PDFCY CG+
Sbjct: 209 PDFCYHCGL 217

[Close]

BLAST of MS012219 vs. NCBI nr
Match: XP_042958115.1 (uncharacterized protein LOC122293643 [Carya illinoinensis])

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           +GN+IGV E++D + DE   GE + +++  D+TKPL RG  IN+ G  GSCWV   YERL
Sbjct: 124 IGNSIGVVEEIDVEKDEVAWGEFIKIRILLDVTKPLLRGKCINL-GNHGSCWVRFTYERL 183

Query: 61  PDFCYFCGMIGHLAKTC 78
           P FCY CG +GH  K C
Sbjct: 184 PTFCYGCGRLGHSHKDC 199

[Close]

BLAST of MS012219 vs. NCBI nr
Match: XP_035547259.1 (uncharacterized protein LOC118348856 [Juglans regia])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           +GN IG+ E+VD +  E   GE L ++VR +I++PL RG+ + + G  GS W+   YERL
Sbjct: 120 IGNKIGIVEEVDGEQSEVAWGEYLRIRVRVNISQPLMRGITVKL-GQFGSVWIRFAYERL 179

Query: 61  PDFCYFCGMIGHLAKTCDSN 81
           P+FCY CG +GH  K C+ N
Sbjct: 180 PNFCYMCGKLGHQQKDCEIN 198

[Close]

BLAST of MS012219 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNAIG   DVDC+   +  G SL ++V  DITKPLRRG+KINIDGPMG CW+PI+YERL
Sbjct: 148 LGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

Query: 61  PDFCYFCGMIGHLAKTCDS 80
           PDFCYFCG+IGH +  CD+
Sbjct: 208 PDFCYFCGVIGHSSHDCDA 226

[Close]

BLAST of MS012219 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.2e-24
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNAIG+ EDV+ +++ +C G  L V+VRFD+ KPL RG+K+N+DGPMG CW+PI+YERL
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 61  PDFCYFCGMIGHLAKTC 78
           PDF Y CG + H+ K C
Sbjct: 209 PDFRYHCGRLDHILKDC 225

[Close]

BLAST of MS012219 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           LGNA+G  E+ DCD      G +L V+V  DI+KPLRRG+K+N+DGP+G  W+PI+YERL
Sbjct: 149 LGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERL 208

Query: 61  PDFCYFCGM 70
           PDFCY CG+
Sbjct: 209 PDFCYHCGL 217

[Close]

BLAST of MS012219 vs. ExPASy TrEMBL
Match: A0A6P9EID8 (uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           +GN IG+ E+VD +  E   GE L ++VR +I++PL RG+ + + G  GS W+   YERL
Sbjct: 120 IGNKIGIVEEVDGEQSEVAWGEYLRIRVRVNISQPLMRGITVKL-GQFGSVWIRFAYERL 179

Query: 61  PDFCYFCGMIGHLAKTCDSN 81
           P+FCY CG +GH  K C+ N
Sbjct: 180 PNFCYMCGKLGHQQKDCEIN 198

[Close]

BLAST of MS012219 vs. ExPASy TrEMBL
Match: K3ZNG2 (CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1   LGNAIGVCEDVDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERL 60
           +G+  G   +VD +SD+   G  L VKVR DI  PLRRG+ +++   +G  W P++YE L
Sbjct: 144 IGDEFGKFLEVDFESDDLAAGRVLRVKVRLDIRLPLRRGITVDLGEGVGDRWCPVQYEFL 203

Query: 61  PDFCYFCGMIGHLAKTC 78
           P+FCY CG+IGH+ KTC
Sbjct: 204 PEFCYVCGIIGHVDKTC 220

[Close]

BLAST of MS012219 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 23/71 (32.39%), Postives = 33/71 (46.48%), Query Frame = 0


Query: 11  VDCDSDEYCLGESLTVKVRFDITKPLRRGVKINIDGPMGSCWVPIKYERLPDFCYFCGMI 70
           VD ++  +  G    V +  ++ KPL+  V IN D         + YE L   C  CG+ 
Sbjct: 196 VDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYF------VAYEGLSKICSSCGIY 255

Query: 71  GHLAKTCDSNV 82
           GHL  +C  NV
Sbjct: 256 GHLVHSCPRNV 260

The following BLAST results are available for this feature:

BLAST of MS012219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	4.1e-26	67.09	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	1.9e-23	59.74	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	3.1e-18	59.42	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_042958115.1	6.6e-16	51.95	uncharacterized protein LOC122293643 [Carya illinoinensis]	[more]
XP_035547259.1	4.2e-15	46.25	uncharacterized protein LOC118348856 [Juglans regia]	[more]

BLAST of MS012219 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	2.0e-26	67.09	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	9.2e-24	59.74	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	1.5e-18	59.42	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6P9EID8	2.1e-15	46.25	uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 P...	[more]
K3ZNG2	3.5e-15	48.05	CCHC-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]

BLAST of MS012219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01050.1	1.2e-04	32.39	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 30..78 e-value: 2.8E-16 score: 58.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 64..77 score: 9.224166
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 61..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012219.1	MS012219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding