MS012214 (gene) Bitter gourd (TR) v1

Overview


Name	MS012214
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	S-methyl-5-thioribose kinase
Location	scaffold797: 483946 .. 484137 (-)
RNA-Seq Expression	MS012214
Synteny	MS012214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTCTCCGAGTTCCGGCGGCTGGACGAGAAGTCCCTAATAGAATACGTAAGGACAGTTCCTTGTCTGGGTTCGATGGTGGGCGACAATTTGGAGGTTAAAGAGGTCGGAGATGGCAACCCTAATTTCGTTTACATTGTTGTTGTCTCCTCTGGTTCCTTCGTCCTCAAGCAGGTCCCTCTCTGCAATTGT

mRNA sequence

GATTTCTCCGAGTTCCGGCGGCTGGACGAGAAGTCCCTAATAGAATACGTAAGGACAGTTCCTTGTCTGGGTTCGATGGTGGGCGACAATTTGGAGGTTAAAGAGGTCGGAGATGGCAACCCTAATTTCGTTTACATTGTTGTTGTCTCCTCTGGTTCCTTCGTCCTCAAGCAGGTCCCTCTCTGCAATTGT

Coding sequence (CDS)

GATTTCTCCGAGTTCCGGCGGCTGGACGAGAAGTCCCTAATAGAATACGTAAGGACAGTTCCTTGTCTGGGTTCGATGGTGGGCGACAATTTGGAGGTTAAAGAGGTCGGAGATGGCAACCCTAATTTCGTTTACATTGTTGTTGTCTCCTCTGGTTCCTTCGTCCTCAAGCAGGTCCCTCTCTGCAATTGT

Protein sequence

DFSEFRRLDEKSLIEYVRTVPCLGSMVGDNLEVKEVGDGNPNFVYIVVVSSGSFVLKQVPLCNC

Homology

[Close]

BLAST of MS012214 vs. NCBI nr
Match: XP_022148714.1 (methylthioribose kinase-like [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 6.2e-22
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  DFSEFRRLDEKSLIEYVRTVPCLGSMVGDNLEVKEVGDGNPNFVYIVVVSSGSFVLKQ 59
          DFSEFRRLDEKSL+EYVRTVPCLGSMVGDNLEVKEVGDGN NFVYIVV SSGSFVLKQ
Sbjct: 3  DFSEFRRLDEKSLVEYVRTVPCLGSMVGDNLEVKEVGDGNLNFVYIVVGSSGSFVLKQ 60

[Close]

BLAST of MS012214 vs. NCBI nr
Match: XP_010096294.1 (methylthioribose kinase [Morus notabilis] >EXB63689.1 hypothetical protein L484_027033 [Morus notabilis])

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-14
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVGDNLE---VKEVGDGNPNFVYIVVVSSGSFVLKQ 61
          F+E+R LDEKSL+EY++TVP L S +GDN++   +KEVGDGN NFVYIV+ SSGSFV+KQ
Sbjct: 3  FAEYRPLDEKSLVEYIKTVPSLSSKLGDNIDGLTIKEVGDGNLNFVYIVIGSSGSFVIKQ 62

Query: 62 -VPLCNC 65
           +P   C
Sbjct: 63 ALPYIRC 69

[Close]

BLAST of MS012214 vs. NCBI nr
Match: XP_008456172.1 (PREDICTED: methylthioribose kinase [Cucumis melo] >KAA0037190.1 methylthioribose kinase [Cucumis melo var. makuwa] >TYK13882.1 methylthioribose kinase [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-14
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  DFSEFRRLDEKSLIEYVRTVPCLGSMVG---DNLEVKEVGDGNPNFVYIVVVSSGSFVLK 60
          DFS+FR LDE SLIEY++TVP L   +G   D +E+KEVGDGN NFVYIVV SSGSFV+K
Sbjct: 2  DFSQFRPLDETSLIEYIKTVPSLSDKLGNKFDGIEIKEVGDGNLNFVYIVVGSSGSFVIK 61

Query: 61 Q-VPLCNC 65
          Q +P   C
Sbjct: 62 QAIPYVRC 69

[Close]

BLAST of MS012214 vs. NCBI nr
Match: XP_023895619.1 (methylthioribose kinase-like [Quercus suber])

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-14
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVGDNLEVKEVGDGNPNFVYIVVVSSGSFVLKQ-VP 61
          F+EFR LDEKSLIEY++ VP L S +G +L+VKEVGDGN NFVYIVV ++GSFV+KQ +P
Sbjct: 3  FTEFRPLDEKSLIEYIKAVPSLSSKLGSDLKVKEVGDGNLNFVYIVVSNAGSFVIKQALP 62

Query: 62 LCNC 65
             C
Sbjct: 63 YMRC 66

[Close]

BLAST of MS012214 vs. NCBI nr
Match: EXB66346.1 (hypothetical protein L484_008091 [Morus notabilis])

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVGDNLE---VKEVGDGNPNFVYIVVVSSGSFVLKQ 61
          F+E+R LDEKSL+EY++ VP L S +GDN++   +KEVGDGN NFVYIV+ SSGSFV+KQ
Sbjct: 3  FAEYRPLDEKSLVEYIKAVPSLSSKLGDNIDGLTIKEVGDGNLNFVYIVIGSSGSFVIKQ 62

[Close]

BLAST of MS012214 vs. ExPASy Swiss-Prot
Match: Q9C6D2 (Methylthioribose kinase OS=Arabidopsis thaliana OX=3702 GN=MTK PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.2e-13
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVG-----DNLEVKEVGDGNPNFVYIVVVSSGSFVL 61
          F EF  L+EKSL++Y+++ P L S +G     D+L +KEVGDGN NFV+IVV SSGS V+
Sbjct: 3  FEEFTPLNEKSLVDYIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFVFIVVGSSGSLVI 62

Query: 62 KQ-VPLCNC 65
          KQ +P   C
Sbjct: 63 KQALPYIRC 71

[Close]

BLAST of MS012214 vs. ExPASy Swiss-Prot
Match: Q7XR61 (Methylthioribose kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MTK1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 5  FRRLDEKSLIEYVRTVPCLGSMVG---DNLEVKEVGDGNPNFVYIVVVSSGSFVLKQ-VP 64
          FR LDE SL+ Y++  P L + +G   D L +KEVGDGN NFVYIV+  +GS V+KQ +P
Sbjct: 16 FRPLDEASLVAYIKATPALAARLGGSLDALTIKEVGDGNLNFVYIVLSDAGSVVIKQALP 75

[Close]

BLAST of MS012214 vs. ExPASy Swiss-Prot
Match: Q7XR60 (Methylthioribose kinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MTK2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-10
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 5  FRRLDEKSLIEYVRTVPCLGSMVG---DNLEVKEVGDGNPNFVYIVVVSSGSFVLKQ 59
          FR LDE SL+ Y++  P L + +G   D L +KEVGDGN NFVYIV+  +GS V+KQ
Sbjct: 13 FRPLDEASLVAYIKATPALAARLGGRLDALTIKEVGDGNLNFVYIVLSDAGSLVIKQ 69

[Close]

BLAST of MS012214 vs. ExPASy TrEMBL
Match: A0A6J1D4T2 (S-methyl-5-thioribose kinase OS=Momordica charantia OX=3673 GN=LOC111017310 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  DFSEFRRLDEKSLIEYVRTVPCLGSMVGDNLEVKEVGDGNPNFVYIVVVSSGSFVLKQ 59
          DFSEFRRLDEKSL+EYVRTVPCLGSMVGDNLEVKEVGDGN NFVYIVV SSGSFVLKQ
Sbjct: 3  DFSEFRRLDEKSLVEYVRTVPCLGSMVGDNLEVKEVGDGNLNFVYIVVGSSGSFVLKQ 60

[Close]

BLAST of MS012214 vs. ExPASy TrEMBL
Match: A0A5D3CR78 (S-methyl-5-thioribose kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00690 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  DFSEFRRLDEKSLIEYVRTVPCLGSMVG---DNLEVKEVGDGNPNFVYIVVVSSGSFVLK 60
          DFS+FR LDE SLIEY++TVP L   +G   D +E+KEVGDGN NFVYIVV SSGSFV+K
Sbjct: 2  DFSQFRPLDETSLIEYIKTVPSLSDKLGNKFDGIEIKEVGDGNLNFVYIVVGSSGSFVIK 61

Query: 61 Q-VPLCNC 65
          Q +P   C
Sbjct: 62 QAIPYVRC 69

[Close]

BLAST of MS012214 vs. ExPASy TrEMBL
Match: W9RBV8 (S-methyl-5-thioribose kinase OS=Morus notabilis OX=981085 GN=L484_027033 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVGDNLE---VKEVGDGNPNFVYIVVVSSGSFVLKQ 61
          F+E+R LDEKSL+EY++TVP L S +GDN++   +KEVGDGN NFVYIV+ SSGSFV+KQ
Sbjct: 3  FAEYRPLDEKSLVEYIKTVPSLSSKLGDNIDGLTIKEVGDGNLNFVYIVIGSSGSFVIKQ 62

Query: 62 -VPLCNC 65
           +P   C
Sbjct: 63 ALPYIRC 69

[Close]

BLAST of MS012214 vs. ExPASy TrEMBL
Match: A0A1S3C3A9 (S-methyl-5-thioribose kinase OS=Cucumis melo OX=3656 GN=LOC103496190 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  DFSEFRRLDEKSLIEYVRTVPCLGSMVG---DNLEVKEVGDGNPNFVYIVVVSSGSFVLK 60
          DFS+FR LDE SLIEY++TVP L   +G   D +E+KEVGDGN NFVYIVV SSGSFV+K
Sbjct: 2  DFSQFRPLDETSLIEYIKTVPSLSDKLGNKFDGIEIKEVGDGNLNFVYIVVGSSGSFVIK 61

Query: 61 Q-VPLCNC 65
          Q +P   C
Sbjct: 62 QAIPYVRC 69

[Close]

BLAST of MS012214 vs. ExPASy TrEMBL
Match: W9R360 (S-methyl-5-thioribose kinase OS=Morus notabilis OX=981085 GN=L484_008091 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVGDNLE---VKEVGDGNPNFVYIVVVSSGSFVLKQ 61
          F+E+R LDEKSL+EY++ VP L S +GDN++   +KEVGDGN NFVYIV+ SSGSFV+KQ
Sbjct: 3  FAEYRPLDEKSLVEYIKAVPSLSSKLGDNIDGLTIKEVGDGNLNFVYIVIGSSGSFVIKQ 62

[Close]

BLAST of MS012214 vs. TAIR 10
Match: AT1G49820.1 (S-methyl-5-thioribose kinase )

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 2  FSEFRRLDEKSLIEYVRTVPCLGSMVG-----DNLEVKEVGDGNPNFVYIVVVSSGSFVL 61
          F EF  L+EKSL++Y+++ P L S +G     D+L +KEVGDGN NFV+IVV SSGS V+
Sbjct: 3  FEEFTPLNEKSLVDYIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFVFIVVGSSGSLVI 62

Query: 62 KQ-VPLCNC 65
          KQ +P   C
Sbjct: 63 KQALPYIRC 71

The following BLAST results are available for this feature:

BLAST of MS012214 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148714.1	6.2e-22	94.83	methylthioribose kinase-like [Momordica charantia]	[more]
XP_010096294.1	4.8e-14	62.69	methylthioribose kinase [Morus notabilis] >EXB63689.1 hypothetical protein L484_...	[more]
XP_008456172.1	4.8e-14	64.71	PREDICTED: methylthioribose kinase [Cucumis melo] >KAA0037190.1 methylthioribose...	[more]
XP_023895619.1	4.8e-14	65.63	methylthioribose kinase-like [Quercus suber]	[more]
EXB66346.1	8.2e-14	64.52	hypothetical protein L484_008091 [Morus notabilis]	[more]

BLAST of MS012214 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6D2	7.2e-13	53.62	Methylthioribose kinase OS=Arabidopsis thaliana OX=3702 GN=MTK PE=1 SV=1	[more]
Q7XR61	2.6e-10	51.56	Methylthioribose kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MTK1 PE=2 ...	[more]
Q7XR60	3.3e-10	54.39	Methylthioribose kinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MTK2 PE=2 ...	[more]

BLAST of MS012214 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4T2	3.0e-22	94.83	S-methyl-5-thioribose kinase OS=Momordica charantia OX=3673 GN=LOC111017310 PE=3...	[more]
A0A5D3CR78	2.3e-14	64.71	S-methyl-5-thioribose kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
W9RBV8	2.3e-14	62.69	S-methyl-5-thioribose kinase OS=Morus notabilis OX=981085 GN=L484_027033 PE=3 SV...	[more]
A0A1S3C3A9	2.3e-14	64.71	S-methyl-5-thioribose kinase OS=Cucumis melo OX=3656 GN=LOC103496190 PE=3 SV=1	[more]
W9R360	4.0e-14	64.52	S-methyl-5-thioribose kinase OS=Morus notabilis OX=981085 GN=L484_008091 PE=3 SV...	[more]

BLAST of MS012214 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49820.1	5.1e-14	53.62	S-methyl-5-thioribose kinase	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 1..61 e-value: 1.1E-12 score: 50.0
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 4..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012214.1	MS012214.1	mRNA