MS012206 (gene) Bitter gourd (TR) v1

Overview
NameMS012206
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP synthase subunit 9, mitochondrial
Locationscaffold797: 428211 .. 428342 (-)
RNA-Seq ExpressionMS012206
SyntenyMS012206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGCCGAAGCTGCTACAATATTGCTTCAGTGGGGAGCTGCAGTCGGTATTGGAAATGTGTTCAGTTCTTTGATCCATTATGTAGTGCGAAATCAATCATTGGCTAAACAATCATTTGATTATGTCATTTTG

mRNA sequence

GGTGCCGAAGCTGCTACAATATTGCTTCAGTGGGGAGCTGCAGTCGGTATTGGAAATGTGTTCAGTTCTTTGATCCATTATGTAGTGCGAAATCAATCATTGGCTAAACAATCATTTGATTATGTCATTTTG

Coding sequence (CDS)

GGTGCCGAAGCTGCTACAATATTGCTTCAGTGGGGAGCTGCAGTCGGTATTGGAAATGTGTTCAGTTCTTTGATCCATTATGTAGTGCGAAATCAATCATTGGCTAAACAATCATTTGATTATGTCATTTTG

Protein sequence

GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL
Homology
[Close]
BLAST of MS012206 vs. NCBI nr
Match: YP_003276016.1 (ATP synthase F0 subunit 9 [Pleurozia purpurea] >ACR19400.1 ATP synthase F0 subunit 9 [Pleurozia purpurea])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. NCBI nr
Match: QKO27095.1 (ATP synthase F0 subunit 9, partial [Thismia huangii])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. NCBI nr
Match: YP_009941496.1 (ATP synthase subunit 9 [Fagus sylvatica] >QOC70554.1 ATP synthase subunit 9 [Fagus sylvatica] >QVG61338.1 ATP synthase subunit 9 [Fagus sylvatica] >QVG61394.1 ATP synthase subunit 9 [Fagus sylvatica])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. NCBI nr
Match: YP_002608218.2 (ATPase subunit 9 [Carica papaya] >ACB20507.2 ATPase subunit 9 [Carica papaya])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. NCBI nr
Match: YP_009675989.1 (ATP synthase F0 subunit 9 [Porella platyphylla] >QDE12753.1 ATP synthase F0 subunit 9 [Porella platyphylla])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match: P60113 (ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-08
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI    GAA+GIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATI-ASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match: P00840 (ATP synthase subunit 9, mitochondrial OS=Zea mays OX=4577 GN=ATP9 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-08
Identity = 34/44 (77.27%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQ F Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQLFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match: Q37550 (ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-08
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI    GAA+GIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATI-ASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match: P0C518 (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-08
Identity = 34/44 (77.27%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQ F Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQLFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match: P0C519 (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-08
Identity = 34/44 (77.27%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQ F Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQLFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy TrEMBL
Match: A0A3B6JFV5 (ATP-synt_C domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GAEAATI L  GAAVGIGNV SSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAEAATIALA-GAAVGIGNVLSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy TrEMBL
Match: A0A7G3UT45 (ATP synthase subunit 9, mitochondrial (Fragment) OS=Dioscorea membranacea OX=167590 GN=atp9 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy TrEMBL
Match: A0A6C0SJD7 (ATP synthase subunit 9, mitochondrial OS=Frullania orientalis OX=642342 GN=atp9 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy TrEMBL
Match: B9U3N7 (ATP synthase subunit 9, mitochondrial OS=Carica papaya OX=3649 GN=atp9 PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. ExPASy TrEMBL
Match: A0A6C0SJU7 (ATP synthase subunit 9, mitochondrial OS=Nowellia curvifolia OX=280839 GN=atp9 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI L  GAAVGIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 9  GAGAATIALA-GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAIL 51

[Close]
BLAST of MS012206 vs. TAIR 10
Match: AT2G07671.1 (ATP synthase subunit C family protein )

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-09
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI    GAA+GIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 20 GAGAATI-ASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAIL 62

[Close]
BLAST of MS012206 vs. TAIR 10
Match: ATMG01080.1 (mitochondrial F0-ATPase subunit 9 )

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-09
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLAKQSFDYVIL 45
          GA AATI    GAA+GIGNVFSSLIH V RN SLAKQSF Y IL
Sbjct: 20 GAGAATI-ASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAIL 62

[Close]
BLAST of MS012206 vs. TAIR 10
Match: ATMG00040.1 (ATP synthase subunit C family protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 1  GAEAATILLQWGAAVGIGNVFSSLIHYVVRNQSLA 36
          GA AATI    GAA+GIGNVFSSLIH V RN SLA
Sbjct: 20 GAGAATI-ASAGAAIGIGNVFSSLIHSVARNPSLA 53

The following BLAST results are available for this feature:
BLAST of MS012206 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_003276016.17.3e-0679.55ATP synthase F0 subunit 9 [Pleurozia purpurea] >ACR19400.1 ATP synthase F0 subun... [more]
QKO27095.17.3e-0679.55ATP synthase F0 subunit 9, partial [Thismia huangii][more]
YP_009941496.17.3e-0679.55ATP synthase subunit 9 [Fagus sylvatica] >QOC70554.1 ATP synthase subunit 9 [Fag... [more]
YP_002608218.27.3e-0679.55ATPase subunit 9 [Carica papaya] >ACB20507.2 ATPase subunit 9 [Carica papaya][more]
YP_009675989.17.3e-0679.55ATP synthase F0 subunit 9 [Porella platyphylla] >QDE12753.1 ATP synthase F0 subu... [more]
BLAST of MS012206 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P601134.8e-0875.00ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=... [more]
P008404.8e-0877.27ATP synthase subunit 9, mitochondrial OS=Zea mays OX=4577 GN=ATP9 PE=2 SV=2[more]
Q375504.8e-0875.00ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV... [more]
P0C5184.8e-0877.27ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
P0C5194.8e-0877.27ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 G... [more]
BLAST of MS012206 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3B6JFV52.7e-0679.55ATP-synt_C domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1[more]
A0A7G3UT453.6e-0679.55ATP synthase subunit 9, mitochondrial (Fragment) OS=Dioscorea membranacea OX=167... [more]
A0A6C0SJD73.6e-0679.55ATP synthase subunit 9, mitochondrial OS=Frullania orientalis OX=642342 GN=atp9 ... [more]
B9U3N73.6e-0679.55ATP synthase subunit 9, mitochondrial OS=Carica papaya OX=3649 GN=atp9 PE=3 SV=2[more]
A0A6C0SJU73.6e-0679.55ATP synthase subunit 9, mitochondrial OS=Nowellia curvifolia OX=280839 GN=atp9 P... [more]
BLAST of MS012206 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07671.13.4e-0975.00ATP synthase subunit C family protein [more]
ATMG01080.13.4e-0975.00mitochondrial F0-ATPase subunit 9 [more]
ATMG00040.12.3e-0574.29ATP synthase subunit C family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 22..37
score: 37.87
coord: 39..44
score: 9.35
coord: 1..20
score: 32.84
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..44
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 1..44
e-value: 4.2E-9
score: 38.4
NoneNo IPR availablePANTHERPTHR10031:SF38ATP SYNTHASE SUBUNIT 9, MITOCHONDRIALcoord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012206.1MS012206.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity