MS012186 (gene) Bitter gourd (TR) v1

Overview
NameMS012186
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S29
Locationscaffold797: 253127 .. 254435 (-)
RNA-Seq ExpressionMS012186
SyntenyMS012186
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCACTCCAACGTGTGGAACTCCCACCCCAAGAACTACGGTCCCGGCTCTCGCACCTGGTAGGTTCTTCTTCTCTTCCCACGCTTCCCTTCTGAGATGATTCCCATGAGATTTGATCAACTGTTTTGTCCTACGATTGACGATCCCATCTTTTGCTTGAACAACTGCTTGTTTTTATGGATTAAAGAGTTGTAGCTCGAAAGTCTTTTGAAGAAAATAGATTATTGGGTTTGAGTTGGATATGTTTAATACAAGTGATTTTGCACTTGTTGGTATATGTAGAAGCACATGAGCGGAATGTTATAGCGAATGATCTTTTGTCGATGCATTGAGGTCTAATTTCATGTACTATTATCCTTTTTCCGCTTCATGTTAGCCCTCTGCGGAAAATTTGTTTCTTTTATTTGATTTGGGCATCCATGACAACGTATCTGTGATTCATTTAAGGATAACAATAACGGAGGGACGAAAGAAAGAAAAAGGGTTGCTCACATATAAGATAAATTGTGTAGTAATGAATTTGGGATTACAGTCATCTGATGAATAGAATAGTTTACAACGGAAACCAGCCTCTTGCAACAACTATAACAGCTCAACATTAGACCAACTACTACGTTAATGATTTGTCTTTGCAATCTACACTTCTATACATTTGTGATGAATATACTTTTGTCTACCATATTGTGGGCTGTGGTGTGTGTTATTAAGAGTTGTAATCGTTATTTGATTGTCAAATTTCCTTTATACTTATTTGTAACGTTTTGCTAAATGGTGATTAGGCATGGAATTCGTGATTGCTTTTGCCTAAGTTATTCTAGATTGTAGTTTGAATGTTGATTGAATGGTAGGAGTTCTTGGGAATAGGTTACTCATGGTGTTTGTGGCTTTTGGATGGGCTAAATGTTAGTTTAATTTGCCTAACCTGCTGATTGATGTTCAGTTGAATAATGATATTAGTGAAAGAGTTGACGTGATGCCACATTGATCGTCTGTCTCTGCGTCTAATGATTGATCGTCTGTCTCTGCGTCTAATGATTGATCGTCTGTCTCTGCGTCTAATGATCTTGGGATTTATGGATAGATTTGGTTGGGTTAATATTTAATCAAGAGGGTATTAGTATGCAAAAGTATGATATGGAGGTTGCTTTTGTTTGAATTAATGTCTTCTCTGTTTGTCTTGTCCAGCCGGGTTTGTGGAAATCCTCACGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAATATTTTAATTCTTGAT

mRNA sequence

ATGGGGCACTCCAACGTGTGGAACTCCCACCCCAAGAACTACGGTCCCGGCTCTCGCACCTGCCGGGTTTGTGGAAATCCTCACGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAATATTTTAATTCTTGAT

Coding sequence (CDS)

ATGGGGCACTCCAACGTGTGGAACTCCCACCCCAAGAACTACGGTCCCGGCTCTCGCACCTGCCGGGTTTGTGGAAATCCTCACGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGGTAAATATTTTAATTCTTGAT

Protein sequence

MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILILD
Homology
[Close]
BLAST of MS012186 vs. NCBI nr
Match: BAU00845.1 (hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis])

HSP 1 Score: 133.7 bits (335), Expect = 5.5e-28
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNI  L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNIFYL 60

[Close]
BLAST of MS012186 vs. NCBI nr
Match: KAG4984403.1 (hypothetical protein JHK87_029152 [Glycine soja] >KAG4998453.1 hypothetical protein JHK85_029892 [Glycine max] >KAG5005219.1 hypothetical protein JHK86_029358 [Glycine max] >KAG5128411.1 hypothetical protein JHK82_029246 [Glycine max] >KAG5153016.1 hypothetical protein JHK84_029488 [Glycine max])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV++ +L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

[Close]
BLAST of MS012186 vs. NCBI nr
Match: RZB89157.1 (40S ribosomal protein S29 [Glycine soja])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV++ +L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

[Close]
BLAST of MS012186 vs. NCBI nr
Match: KAB2619480.1 (hypothetical protein D8674_015349 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKY LMCCRQCFRSNAKEIGFIK+ +LI 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYALMCCRQCFRSNAKEIGFIKIYVLID 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of MS012186 vs. NCBI nr
Match: KAG4907652.1 (hypothetical protein JHK86_056136 [Glycine max] >KAG5074954.1 hypothetical protein JHK84_056185 [Glycine max] >KAG5077611.1 hypothetical protein JHK82_056306 [Glycine max])

HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV+  I+
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHTWII 60

[Close]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 9.2e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-25
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

[Close]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.4e-19
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54

[Close]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-18
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 57
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K++
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKKLD 56

[Close]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match: Q6F473 (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-18
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVN 57
          MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K++
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56

[Close]
BLAST of MS012186 vs. ExPASy TrEMBL
Match: A0A0S3T7T0 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G248000 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-28
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNI  L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNIFYL 60

[Close]
BLAST of MS012186 vs. ExPASy TrEMBL
Match: A0A0R0I6D2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G258500 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV++ +L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

[Close]
BLAST of MS012186 vs. ExPASy TrEMBL
Match: A0A445ISV5 (40S ribosomal protein S29 OS=Glycine soja OX=3848 GN=D0Y65_028154 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV++ +L
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVHLNVL 60

[Close]
BLAST of MS012186 vs. ExPASy TrEMBL
Match: A0A4D6N8J1 (Small subunit ribosomal protein S29e OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3484 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-27
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNI 58
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV++
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVSV 57

[Close]
BLAST of MS012186 vs. ExPASy TrEMBL
Match: A0A5N5H2B6 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_015349 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVNILIL 60
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKY LMCCRQCFRSNAKEIGFIK+ +LI 
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYALMCCRQCFRSNAKEIGFIKIYVLID 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of MS012186 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of MS012186 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]
BLAST of MS012186 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:
BLAST of MS012186 vs. NCBI nr
Match NameE-valueIdentityDescription
BAU00845.15.5e-2896.67hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis][more]
KAG4984403.12.8e-2793.33hypothetical protein JHK87_029152 [Glycine soja] >KAG4998453.1 hypothetical prot... [more]
RZB89157.12.8e-2793.3340S ribosomal protein S29 [Glycine soja][more]
KAB2619480.16.1e-2791.80hypothetical protein D8674_015349 [Pyrus ussuriensis x Pyrus communis][more]
KAG4907652.16.1e-2793.33hypothetical protein JHK86_056136 [Glycine max] >KAG5074954.1 hypothetical prote... [more]
BLAST of MS012186 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q680P89.2e-2692.5940S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2[more]
Q5I7K31.6e-2590.7440S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1[more]
Q7XYB06.4e-1968.5240S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1[more]
Q4PM471.9e-1867.8640S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1[more]
Q6F4734.1e-1866.0740S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1[more]
BLAST of MS012186 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S3T7T02.7e-2896.67Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G... [more]
A0A0R0I6D21.3e-2793.33Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G258500 PE=3 SV=1[more]
A0A445ISV51.3e-2793.3340S ribosomal protein S29 OS=Glycine soja OX=3848 GN=D0Y65_028154 PE=3 SV=1[more]
A0A4D6N8J13.0e-2796.49Small subunit ribosomal protein S29e OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3... [more]
A0A5N5H2B63.0e-2791.80Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
BLAST of MS012186 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G43980.16.5e-2792.59Ribosomal protein S14p/S29e family protein [more]
AT3G44010.16.5e-2792.59Ribosomal protein S14p/S29e family protein [more]
AT4G33865.16.5e-2792.59Ribosomal protein S14p/S29e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 7..54
e-value: 1.0E-17
score: 63.6
IPR043140Ribosomal protein S14/S29GENE3D4.10.830.1030s Ribosomal Protein S14; Chain Ncoord: 1..56
e-value: 1.4E-35
score: 123.0
IPR03974440S ribosomal protein S29/30S ribosomal protein S14 type ZPANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 1..54
NoneNo IPR availablePANTHERPTHR12010:SF1440S RIBOSOMAL PROTEIN S29coord: 1..54
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 13..49
IPR023676Ribosomal protein S14, type Z, archaealHAMAPMF_01364_ARibosomal_S14_2_Acoord: 2..57
score: 15.693845

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012186.1MS012186.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008270 zinc ion binding