MS012168 (gene) Bitter gourd (TR) v1

Overview
NameMS012168
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBRCT domain-containing protein
Locationscaffold797: 95428 .. 95502 (+)
RNA-Seq ExpressionMS012168
SyntenyMS012168
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCA

mRNA sequence

CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCA

Coding sequence (CDS)

CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCA

Protein sequence

QGIWSSGMILALGARGPEFNSRNAP
Homology
[Close]
BLAST of MS012168 vs. NCBI nr
Match: CAF1699910.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFNSRNAP 26
          QGIWSSGMILALGARGPEF+SRNAP
Sbjct: 15 QGIWSSGMILALGARGPEFDSRNAP 39

[Close]
BLAST of MS012168 vs. NCBI nr
Match: GEW71266.1 (monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QGIWSSGMILALGARGPEFNSRNAP 26
           +GIWSSGMILALGARGPEF+SRNAP
Sbjct: 473 EGIWSSGMILALGARGPEFDSRNAP 497

[Close]
BLAST of MS012168 vs. NCBI nr
Match: KAG6761289.1 (hypothetical protein POTOM_034499 [Populus tomentosa])

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-04
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFNSRNAP 26
          +GIWSSGMILALGARGPEF+SRNAP
Sbjct: 13 KGIWSSGMILALGARGPEFHSRNAP 37

[Close]
BLAST of MS012168 vs. NCBI nr
Match: KAG6762591.1 (hypothetical protein POTOM_033102 [Populus tomentosa])

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-04
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFNSRNAP 26
          +GIWSSGMILALGARGPEF+SRNAP
Sbjct: 13 KGIWSSGMILALGARGPEFDSRNAP 37

[Close]
BLAST of MS012168 vs. NCBI nr
Match: KAF8046995.1 (hypothetical protein N665_3269s0004, partial [Sinapis alba])

HSP 1 Score: 52.4 bits (124), Expect = 6.7e-04
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFNSRNAP 26
          +GIWSSGMILALGARGPEF+SRNAP
Sbjct: 41 RGIWSSGMILALGARGPEFDSRNAP 65

[Close]
BLAST of MS012168 vs. ExPASy TrEMBL
Match: A0A061DQC8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-04
Identity = 22/25 (88.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFNSRNAP 26
          +G+WSSGMILALGARGPEF+SRNAP
Sbjct: 21 KGVWSSGMILALGARGPEFDSRNAP 45

[Close]
BLAST of MS012168 vs. ExPASy TrEMBL
Match: A0A3P6B491 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFNSRNAP 26
          GIWSSGMILALGARGPEF+SRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

[Close]
BLAST of MS012168 vs. ExPASy TrEMBL
Match: A0A3P6BFV3 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFNSRNAP 26
          GIWSSGMILALGARGPEF+SRNAP
Sbjct: 16 GIWSSGMILALGARGPEFDSRNAP 39

[Close]
BLAST of MS012168 vs. ExPASy TrEMBL
Match: A0A2K1Z527 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFNSRNAP 26
          GIWSSGMILALGARGPEF+SRNAP
Sbjct: 2  GIWSSGMILALGARGPEFDSRNAP 25

[Close]
BLAST of MS012168 vs. ExPASy TrEMBL
Match: A0A078I2F6 (BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFNSRNAP 26
          GIWSSGMILALGARGPEF+SRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

The following BLAST results are available for this feature:
BLAST of MS012168 vs. NCBI nr
Match NameE-valueIdentityDescription
CAF1699910.12.3e-0496.00unnamed protein product [Brassica napus][more]
GEW71266.15.1e-0492.00monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium][more]
KAG6761289.16.7e-0492.00hypothetical protein POTOM_034499 [Populus tomentosa][more]
KAG6762591.16.7e-0492.00hypothetical protein POTOM_033102 [Populus tomentosa][more]
KAF8046995.16.7e-0492.00hypothetical protein N665_3269s0004, partial [Sinapis alba][more]
BLAST of MS012168 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012168 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A061DQC84.2e-0488.00Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1[more]
A0A3P6B4915.5e-0495.83Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1[more]
A0A3P6BFV35.5e-0495.83Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1[more]
A0A2K1Z5275.5e-0495.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 ... [more]
A0A078I2F65.5e-0495.83BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1[more]
BLAST of MS012168 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012168.1MS012168.1mRNA