MS011896 (gene) Bitter gourd (TR) v1

Overview


Name	MS011896
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	chloroplast stem-loop binding protein of 41 kDa
Location	scaffold1150: 260523 .. 262402 (+)
RNA-Seq Expression	MS011896
Synteny	MS011896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTTGCTTCTTCATGTTCCCTCTTCTCCTCCACGCCCTCCATCCATCTTCCACCTTCTGTTTCTCCTTATCTTCCACGTCTATCACTCTCTTCCCCTTCTGCTCTCTCATCCTCTTTCTCCATCTCCCATTCTTTTCCCTCTTTCCCCTCCATTTCCAGACCCTCCAACGTTTCCTCCTTCACTCTCAGGGCTACCTCTGCTCAGAATAAGAAGAAGGTCTTGATTGTCAATACGAACAGCGGCGGCCATGCCATAATTGGCTTCTACTTTGCAAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTCTCACTGTGGGTGAACAGGGTTCGGACAAGATGAACAAGCCTCCATTTAACAGATTCTCAGTTAGTAATTACTCAAGCAACTTCCTTTTTGCAACTCTACTCTGACGGGGAACTTGAAATGGTGGTGGTCAATGGGAATTTCTTGGATTAATCTTTTAACCGTCTGTGCAATTTGGAATGTTGTTCAGGAAATTGTGAGTGCCGGAGGGAAGACTGTATGGGGGGATCCTGCAGAAGTTGGGAAGGTCGTGGCAGGGGCCTCATTTGACGTGGTATTGGATAACAATGGCAAGGACGTTGAAACTGTGGGGTCTGTCACTTGAGATTTACTACTTTTTCTCATGCTTTCTTGTGGATTATTTGTTATTCTTTATATGCCATAGAATATTAGGATAGGTTTCTTGTTTTGTTGAAATTAATCCACCTTTTTAACCTGGCTATAAGTGCCAAGAAAAATAATAAACGTAATTTAGCTGTTTATGAAAAAGAGTAATCAACATGATTTAGTTTATCTGGCATGTTGATTACTCTTTTTCACAAAGATTTCAGTAAGATTAAATTTAAGCTGCAATTTGGCCCCTTTTCTGACACAGACCTGTGATTGATTGGGCAAAGAGCTCTGGCGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGACGAACCTCCTCATGTTGAAGGGGTAAATGCTGCAATTTCAACGTGTTCCTGCCAGCCACAATAGAATAAATACATATTTTTAGTTCCAAACTGCTAATAAATCTGCATGATTAACCATGACAGGATACTGTGAATGCTAATGCTAGTCATGTTGGTGTTGAGAAATATATTGCAGAGGTCTTCGGCAGTTGGGCTATATTCCGTCCACAGTACATGATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTAAGACCACACATCTTTCTAAACCTGTCAACTGTTTAGAATGATATGTAGGTTTCTAACTTTGATTGATAAATACACAATGCAGGAATCGTCCGGGACAGACCGGTTCCAATTCCAGGCTCAGGGATGCAGCTGACGAACATCGCCCATGTCAGGGACTTGTCTTCTATGCTGACACTGGCAGTAGAGAAGCCAGACGAAGCACACTCTAACATATTCAACTGCGTAAGCGATCGCGCCGTGACCCTTGATGGAATGGCCAAGTTATGTGCTCAAGCAGCAGGACGTTCGGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGATTGATGCAAAGAAAGCTTTTCCTTTCAGGACATATGTGAGTAAAATGAAATAGTTTCTTTGGCATTTTGGTGGGTCAATATAGACTCTCAAGACATTGCTACCCATTGTATTCTGCAGCATTTCTATGCAGAGCCGAGAGCGGCTCAGGATATTCTAGGCTGGAAAGGCACCACATATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTACGTGAAGATTGGTAGAGACAAGAAATCTATTCAGTTTGATTTAGATGATAAGATACTAGAGTCCCTAAAAGTTCCAGTAGCTGCT

mRNA sequence

ATGGCTGCTCTTGCTTCTTCATGTTCCCTCTTCTCCTCCACGCCCTCCATCCATCTTCCACCTTCTGTTTCTCCTTATCTTCCACGTCTATCACTCTCTTCCCCTTCTGCTCTCTCATCCTCTTTCTCCATCTCCCATTCTTTTCCCTCTTTCCCCTCCATTTCCAGACCCTCCAACGTTTCCTCCTTCACTCTCAGGGCTACCTCTGCTCAGAATAAGAAGAAGGTCTTGATTGTCAATACGAACAGCGGCGGCCATGCCATAATTGGCTTCTACTTTGCAAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTCTCACTGTGGGTGAACAGGGTTCGGACAAGATGAACAAGCCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCCGGAGGGAAGACTGTATGGGGGGATCCTGCAGAAGTTGGGAAGGTCGTGGCAGGGGCCTCATTTGACGTGGTATTGGATAACAATGGCAAGGACGTTGAAACTGTGGGACCTGTGATTGATTGGGCAAAGAGCTCTGGCGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGACGAACCTCCTCATGTTGAAGGGGATACTGTGAATGCTAATGCTAGTCATGTTGGTGTTGAGAAATATATTGCAGAGGTCTTCGGCAGTTGGGCTATATTCCGTCCACAGTACATGATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGACAGACCGGTTCCAATTCCAGGCTCAGGGATGCAGCTGACGAACATCGCCCATGTCAGGGACTTGTCTTCTATGCTGACACTGGCAGTAGAGAAGCCAGACGAAGCACACTCTAACATATTCAACTGCGTAAGCGATCGCGCCGTGACCCTTGATGGAATGGCCAAGTTATGTGCTCAAGCAGCAGGACGTTCGGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGATTGATGCAAAGAAAGCTTTTCCTTTCAGGACATATCATTTCTATGCAGAGCCGAGAGCGGCTCAGGATATTCTAGGCTGGAAAGGCACCACATATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTACGTGAAGATTGGTAGAGACAAGAAATCTATTCAGTTTGATTTAGATGATAAGATACTAGAGTCCCTAAAAGTTCCAGTAGCTGCT

Coding sequence (CDS)

ATGGCTGCTCTTGCTTCTTCATGTTCCCTCTTCTCCTCCACGCCCTCCATCCATCTTCCACCTTCTGTTTCTCCTTATCTTCCACGTCTATCACTCTCTTCCCCTTCTGCTCTCTCATCCTCTTTCTCCATCTCCCATTCTTTTCCCTCTTTCCCCTCCATTTCCAGACCCTCCAACGTTTCCTCCTTCACTCTCAGGGCTACCTCTGCTCAGAATAAGAAGAAGGTCTTGATTGTCAATACGAACAGCGGCGGCCATGCCATAATTGGCTTCTACTTTGCAAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTCTCACTGTGGGTGAACAGGGTTCGGACAAGATGAACAAGCCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCCGGAGGGAAGACTGTATGGGGGGATCCTGCAGAAGTTGGGAAGGTCGTGGCAGGGGCCTCATTTGACGTGGTATTGGATAACAATGGCAAGGACGTTGAAACTGTGGGACCTGTGATTGATTGGGCAAAGAGCTCTGGCGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGACGAACCTCCTCATGTTGAAGGGGATACTGTGAATGCTAATGCTAGTCATGTTGGTGTTGAGAAATATATTGCAGAGGTCTTCGGCAGTTGGGCTATATTCCGTCCACAGTACATGATTGGATCCGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGACAGACCGGTTCCAATTCCAGGCTCAGGGATGCAGCTGACGAACATCGCCCATGTCAGGGACTTGTCTTCTATGCTGACACTGGCAGTAGAGAAGCCAGACGAAGCACACTCTAACATATTCAACTGCGTAAGCGATCGCGCCGTGACCCTTGATGGAATGGCCAAGTTATGTGCTCAAGCAGCAGGACGTTCGGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGATTGATGCAAAGAAAGCTTTTCCTTTCAGGACATATCATTTCTATGCAGAGCCGAGAGCGGCTCAGGATATTCTAGGCTGGAAAGGCACCACATATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTACGTGAAGATTGGTAGAGACAAGAAATCTATTCAGTTTGATTTAGATGATAAGATACTAGAGTCCCTAAAAGTTCCAGTAGCTGCT

Protein sequence

MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA

Homology

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BLAST of MS011896 vs. NCBI nr
Match: XP_022155645.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica charantia])

HSP 1 Score: 789.6 bits (2038), Expect = 1.2e-224
Identity = 394/400 (98.50%), Postives = 397/400 (99.25%), Query Frame = 0


Query: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNV 60
           MAALASSCSLFSSTPSIH+PPSVSPYLPRLSLSSPSALSS+FSISHSFPSFPSISRPSNV
Sbjct: 1   MAALASSCSLFSSTPSIHJPPSVSPYLPRLSLSSPSALSSTFSISHSFPSFPSISRPSNV 60

Query: 61  SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP 120
           SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP
Sbjct: 61  SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP 120

Query: 121 PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ 180
           PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ
Sbjct: 121 PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ 180

Query: 181 FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD 240
           FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD
Sbjct: 181 FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD 240

Query: 241 CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV 300
           CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS RAV
Sbjct: 241 CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSXRAV 300

Query: 301 TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTY 360
           TLDGMAKLCAQAAGRSV IVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKG TY
Sbjct: 301 TLDGMAKLCAQAAGRSVKIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGXTY 360

Query: 361 LPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           LP+DLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
Sbjct: 361 LPQDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 400

[Close]

BLAST of MS011896 vs. NCBI nr
Match: XP_038888331.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 700.7 bits (1807), Expect = 7.5e-198
Identity = 356/403 (88.34%), Postives = 373/403 (92.56%), Query Frame = 0


Query: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISRP 60
           MAALASS SLFSS PSIHLP S+SP  P LSL   S PS LSSS SISHSF S+PS  RP
Sbjct: 1   MAALASSSSLFSSKPSIHLPSSLSPSFPLLSLSPISHPSPLSSSLSISHSFLSYPSF-RP 60

Query: 61  SNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKM 120
           SNV SF++RATS  +KKKVLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVGE+ SDKM
Sbjct: 61  SNVCSFSVRATSL-DKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 121 NKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSG 180
            KPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKD++TV PVIDWAKSSG
Sbjct: 121 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSG 180

Query: 181 VKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGN 240
           VKQFLFISSAGIYKPTDEPPHVEGD V A+A HVGVEKYIAEVFGSWAIFRPQYMIGSGN
Sbjct: 181 VKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGN 240

Query: 241 NKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD 300
           NKDCEEWFFDRIVR+RPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD
Sbjct: 241 NKDCEEWFFDRIVRNRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSD 300

Query: 301 RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKG 360
           RAVTLDGMAKLCAQAAGR V+IVH+DPKAVG+DAKKAFPFR  HFYAEPRAAQDILGWKG
Sbjct: 301 RAVTLDGMAKLCAQAAGRPVDIVHFDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKG 360

Query: 361 TTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           TT LPEDLKERFEEYVKIGRDKK I+F+LDDKILESLKVPVAA
Sbjct: 361 TTNLPEDLKERFEEYVKIGRDKKPIKFELDDKILESLKVPVAA 401

[Close]

BLAST of MS011896 vs. NCBI nr
Match: XP_022967430.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima])

HSP 1 Score: 691.0 bits (1782), Expect = 5.9e-195
Identity = 350/404 (86.63%), Postives = 375/404 (92.82%), Query Frame = 0


Query: 1   MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISR 60
           MAALA SS SLF+S PSIHLP S+SP L R S   +SSPSAL+SSF+ISHSF  FPS SR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 61  PSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDK 120
            SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVGE+ SDK
Sbjct: 61  RSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120

Query: 121 MNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSS 180
           M KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSS
Sbjct: 121 MKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSG 240
           GVKQFLFISSAGIYKPTDEPPHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSG
Sbjct: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+NIFNCVS
Sbjct: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWK 360
           DRAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFR  HFYAEPRAAQ+ILGWK
Sbjct: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360

Query: 361 GTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
            +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKVPVAA
Sbjct: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of MS011896 vs. NCBI nr
Match: XP_022963688.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata])

HSP 1 Score: 689.5 bits (1778), Expect = 1.7e-194
Identity = 350/404 (86.63%), Postives = 375/404 (92.82%), Query Frame = 0


Query: 1   MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISR 60
           MAALA SS SLF+S PSIHLP S+SP L R SL   SS SAL+SSF+ISHSF  FPS SR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 61  PSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDK 120
            SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVGE+ SDK
Sbjct: 61  RSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120

Query: 121 MNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSS 180
           M KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSS
Sbjct: 121 MKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSG 240
           GVKQFLFISSAGIYKPTDEPPHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSG
Sbjct: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Sbjct: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWK 360
           DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK
Sbjct: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360

Query: 361 GTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
            +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKVPVAA
Sbjct: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of MS011896 vs. NCBI nr
Match: KAG6571471.1 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 689.1 bits (1777), Expect = 2.2e-194
Identity = 349/404 (86.39%), Postives = 375/404 (92.82%), Query Frame = 0


Query: 1   MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISR 60
           MAALA SS SLF+S PSIHLP S+SP L R SL   SSPSAL+SSF+ISHSF  FPS SR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 61  PSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDK 120
            SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFA+QLLGSGHEVTILTVGE+ SDK
Sbjct: 61  RSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAEQLLGSGHEVTILTVGEESSDK 120

Query: 121 MNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSS 180
           M KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSS
Sbjct: 121 MKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSG 240
           GVKQFLFISSAGIYKPTDEPPHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSG
Sbjct: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Sbjct: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWK 360
           DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK
Sbjct: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360

Query: 361 GTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
            +T LPEDLKERFEEYVKIGRDKK+I+F+LDD ILESLKVPVAA
Sbjct: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDNILESLKVPVAA 403

[Close]

BLAST of MS011896 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 1.6e-163
Identity = 293/406 (72.17%), Postives = 334/406 (82.27%), Query Frame = 0


Query: 1   MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SI 60
           MAAL+SS   FSS       ++ +PPS+  +    S SS S+LSSS S S S  +F    
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 61  SRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGS 120
           SR  +   FT++A+S   KK VLIVNTNSGGHA+IGFYFAK+LL +GH VTILTVG++ S
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 121 DKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAK 180
           +KM KPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD++TV PV+DWAK
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAK 180

Query: 181 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIG 240
           SSGVKQFLFISSAGIYK T++PPHVEGD V A+A HV VEKY+AE FG+WA FRPQYMIG
Sbjct: 181 SSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIG 240

Query: 241 SGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 300
           SGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFNC
Sbjct: 241 SGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNC 300

Query: 301 VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILG 360
           VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FR  HFYAEPRAA+D+LG
Sbjct: 301 VSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLG 360

Query: 361 WKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           W+  T LPEDLKERFEEYVKIGRDKK I+F+LDDKILE+LK PVAA
Sbjct: 361 WESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

[Close]

BLAST of MS011896 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-49
Identity = 117/330 (35.45%), Postives = 175/330 (53.03%), Query Frame = 0


Query: 69  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEI 128
           SA ++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K      ++    
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFAD 108

Query: 129 VSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFIS 188
            S+    + GD  +   V   ++   FDVV D NG++ E V P+++      ++Q+++ S
Sbjct: 109 FSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCS 168

Query: 189 SAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCE 248
           SAG+Y  +D  PH E D V+  + H G    E  +     +W   RP Y+ G  N    E
Sbjct: 169 SAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVE 228

Query: 249 EWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTL 308
           EWFF R+   RP+P+P SG+Q++ + HV+DL++   L V   ++A   IFN   ++ VT 
Sbjct: 229 EWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTF 288

Query: 309 DGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL 368
           DG+AK CA+A G     IVHY+PK      KKAFPFR  HF+A    A+ +LGWK    L
Sbjct: 289 DGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDL 348

Query: 369 PEDLKERFEEYVKIGRDKKSIQFDLDDKIL 392
            E L + +      G  +K   F  DD IL
Sbjct: 349 VEGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

[Close]

BLAST of MS011896 vs. ExPASy TrEMBL
Match: A0A6J1DN04 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022727 PE=3 SV=1)

HSP 1 Score: 790.0 bits (2039), Expect = 4.5e-225
Identity = 395/400 (98.75%), Postives = 397/400 (99.25%), Query Frame = 0


Query: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFPSISRPSNV 60
           MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSS+FSISHSFPSFPSISRPSNV
Sbjct: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSLSSPSALSSTFSISHSFPSFPSISRPSNV 60

Query: 61  SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP 120
           SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP
Sbjct: 61  SSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKP 120

Query: 121 PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ 180
           PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ
Sbjct: 121 PFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQ 180

Query: 181 FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD 240
           FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD
Sbjct: 181 FLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKD 240

Query: 241 CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAV 300
           CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS RAV
Sbjct: 241 CEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSXRAV 300

Query: 301 TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTY 360
           TLDGMAKLCAQAAGRSV IVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKG TY
Sbjct: 301 TLDGMAKLCAQAAGRSVKIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGXTY 360

Query: 361 LPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           LP+DLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA
Sbjct: 361 LPQDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 400

[Close]

BLAST of MS011896 vs. ExPASy TrEMBL
Match: A0A6J1HUG4 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466971 PE=3 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.9e-195
Identity = 350/404 (86.63%), Postives = 375/404 (92.82%), Query Frame = 0


Query: 1   MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLS---LSSPSALSSSFSISHSFPSFPSISR 60
           MAALA SS SLF+S PSIHLP S+SP L R S   +SSPSAL+SSF+ISHSF  FPS SR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 61  PSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDK 120
            SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVGE+ SDK
Sbjct: 61  RSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120

Query: 121 MNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSS 180
           M KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSS
Sbjct: 121 MKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSG 240
           GVKQFLFISSAGIYKPTDEPPHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSG
Sbjct: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAH+NIFNCVS
Sbjct: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWK 360
           DRAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFR  HFYAEPRAAQ+ILGWK
Sbjct: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360

Query: 361 GTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
            +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKVPVAA
Sbjct: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of MS011896 vs. ExPASy TrEMBL
Match: A0A6J1HIM8 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463943 PE=3 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 8.3e-195
Identity = 350/404 (86.63%), Postives = 375/404 (92.82%), Query Frame = 0


Query: 1   MAALA-SSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHSFPSFPSISR 60
           MAALA SS SLF+S PSIHLP S+SP L R SL   SS SAL+SSF+ISHSF  FPS SR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 61  PSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDK 120
            SNV SF++RA+SA +KK VLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVGE+ SDK
Sbjct: 61  RSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120

Query: 121 MNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSS 180
           M KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD+++V PVIDWAKSS
Sbjct: 121 MKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIGSG 240
           GVKQFLFISSAGIYKPTDEPPHVEGDTV A+A HVGVE+YIAEVF SWA+FRPQYMIGSG
Sbjct: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVEKPDEAH+NIFNCVS
Sbjct: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWK 360
           DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+ILGWK
Sbjct: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360

Query: 361 GTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
            +T LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKVPVAA
Sbjct: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 403

[Close]

BLAST of MS011896 vs. ExPASy TrEMBL
Match: A0A0A0KE82 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 PE=3 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 1.4e-189
Identity = 344/410 (83.90%), Postives = 366/410 (89.27%), Query Frame = 0


Query: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFP 60
           MAAL  S SLFSS PSI+ P S+SP  P  SL   S+ S +SSSFSISHS     + SF 
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFS 60

Query: 61  SIS--RPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVG 120
           S S  RPS V SF++RA+S+  KKKVLIVNTNSGGHA+IGFYFAKQLLGSGHEVTILTVG
Sbjct: 61  SSSSFRPSTVFSFSVRASSSP-KKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG 120

Query: 121 EQGSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVI 180
           EQ SDKMNKPPFNRFSEIVS GGKTVWGDPAE+GKVV GASFDVVLDNNGKD++TV PVI
Sbjct: 121 EQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVI 180

Query: 181 DWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQ 240
           DWAKSSGVKQFLFISSAGIYK TDEPPHVEGD V A+A HVGVEKYIAEVF SWA+FRPQ
Sbjct: 181 DWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQ 240

Query: 241 YMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN 300
           YMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN
Sbjct: 241 YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN 300

Query: 301 IFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQ 360
           IFNCVS RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ
Sbjct: 301 IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ 360

Query: 361 DILGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           +ILGW+GTT LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESL VPVAA
Sbjct: 361 EILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLNVPVAA 409

[Close]

BLAST of MS011896 vs. ExPASy TrEMBL
Match: A0A5D3E2H3 (Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00590 PE=3 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 1.8e-189
Identity = 341/408 (83.58%), Postives = 365/408 (89.46%), Query Frame = 0


Query: 1   MAALASSCSLFSSTPSIHLPPSVSPYLPRLSL---SSPSALSSSFSISHS-----FPSFP 60
           MAAL  S SLFSS PSI+ P  +SP    LSL   S+ S +SSSFSISHS     + S  
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSS 60

Query: 61  SISRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQ 120
           S  RPS V SF++RA+S+  KKKVLIVNTNSGGHA+IGFYFAK+LLGSGHEVTILTVGEQ
Sbjct: 61  SSFRPSTVCSFSVRASSS-TKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQ 120

Query: 121 GSDKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDW 180
            SDKMNKPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKD++TV PVIDW
Sbjct: 121 SSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDW 180

Query: 181 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYM 240
           AKSSGVKQFLFISSAGIYKPTDEPPHVEGD V A+A HVGVEKY+AEVF SWAIFRPQYM
Sbjct: 181 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYM 240

Query: 241 IGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF 300
           IGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF
Sbjct: 241 IGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF 300

Query: 301 NCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDI 360
           NCV+DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFR  HFYAEPRAAQ+I
Sbjct: 301 NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEI 360

Query: 361 LGWKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           LGWK TT LPEDLKERFEEYVKIGRDKK+I+F+LDDKILESLKVPVAA
Sbjct: 361 LGWKSTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 407

[Close]

BLAST of MS011896 vs. TAIR 10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa )

HSP 1 Score: 577.0 bits (1486), Expect = 1.2e-164
Identity = 293/406 (72.17%), Postives = 334/406 (82.27%), Query Frame = 0


Query: 1   MAALASSCSLFSS-----TPSIHLPPSVSPYLPRLSLSSPSALSSSFSISHSFPSFP-SI 60
           MAAL+SS   FSS       ++ +PPS+  +    S SS S+LSSS S S S  +F    
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 61  SRPSNVSSFTLRATSAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGS 120
           SR  +   FT++A+S   KK VLIVNTNSGGHA+IGFYFAK+LL +GH VTILTVG++ S
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 121 DKMNKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDVETVGPVIDWAK 180
           +KM KPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD++TV PV+DWAK
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWAK 180

Query: 181 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVNANASHVGVEKYIAEVFGSWAIFRPQYMIG 240
           SSGVKQFLFISSAGIYK T++PPHVEGD V A+A HV VEKY+AE FG+WA FRPQYMIG
Sbjct: 181 SSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIG 240

Query: 241 SGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNC 300
           SGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFNC
Sbjct: 241 SGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNC 300

Query: 301 VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILG 360
           VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FR  HFYAEPRAA+D+LG
Sbjct: 301 VSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLG 360

Query: 361 WKGTTYLPEDLKERFEEYVKIGRDKKSIQFDLDDKILESLKVPVAA 401
           W+  T LPEDLKERFEEYVKIGRDKK I+F+LDDKILE+LK PVAA
Sbjct: 361 WESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

[Close]

BLAST of MS011896 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-50
Identity = 117/330 (35.45%), Postives = 175/330 (53.03%), Query Frame = 0


Query: 69  SAQNKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEQGSDKMNKPPFNRFSEI 128
           SA ++KK+LI+    GG   IG + ++ L+  GH+VT+ T G+    K      ++    
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFAD 108

Query: 129 VSAGGKTVWGDPAE---VGKVVAGASFDVVLDNNGKDVETVGPVIDWAKSSGVKQFLFIS 188
            S+    + GD  +   V   ++   FDVV D NG++ E V P+++      ++Q+++ S
Sbjct: 109 FSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCS 168

Query: 189 SAGIYKPTDEPPHVEGDTVNANASHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCE 248
           SAG+Y  +D  PH E D V+  + H G    E  +     +W   RP Y+ G  N    E
Sbjct: 169 SAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVE 228

Query: 249 EWFFDRIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTL 308
           EWFF R+   RP+P+P SG+Q++ + HV+DL++   L V   ++A   IFN   ++ VT 
Sbjct: 229 EWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTF 288

Query: 309 DGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRTYHFYAEPRAAQDILGWKGTTYL 368
           DG+AK CA+A G     IVHY+PK      KKAFPFR  HF+A    A+ +LGWK    L
Sbjct: 289 DGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDL 348

Query: 369 PEDLKERFEEYVKIGRDKKSIQFDLDDKIL 392
            E L + +      G  +K   F  DD IL
Sbjct: 349 VEGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

The following BLAST results are available for this feature:

BLAST of MS011896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155645.1	1.2e-224	98.50	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Momordica char...	[more]
XP_038888331.1	7.5e-198	88.34	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa...	[more]
XP_022967430.1	5.9e-195	86.63	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxi...	[more]
XP_022963688.1	1.7e-194	86.63	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita mosc...	[more]
KAG6571471.1	2.2e-194	86.39	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucur...	[more]

BLAST of MS011896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYA9	1.6e-163	72.17	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ...	[more]
Q9SA52	2.7e-49	35.45	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ...	[more]

BLAST of MS011896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN04	4.5e-225	98.75	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Momordica ch...	[more]
A0A6J1HUG4	2.9e-195	86.63	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1HIM8	8.3e-195	86.63	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita mo...	[more]
A0A0A0KE82	1.4e-189	83.90	Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 P...	[more]
A0A5D3E2H3	1.8e-189	83.58	Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX...	[more]

BLAST of MS011896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63140.1	1.2e-164	72.17	chloroplast stem-loop binding protein of 41 kDa	[more]
AT1G09340.1	1.9e-50	35.45	chloroplast RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 72..375 e-value: 1.5E-31 score: 111.6
None	No IPR available	PANTHER	PTHR43725	UDP-GLUCOSE 4-EPIMERASE	coord: 50..398
None	No IPR available	PANTHER	PTHR43725:SF6	CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTIC	coord: 50..398
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 84..294 e-value: 2.8E-9 score: 36.8
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 69..381

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011896.1	MS011896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity