MS011880 (gene) Bitter gourd (TR) v1

Overview


Name	MS011880
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small polypeptide DEVIL 14
Location	scaffold1150: 180864 .. 180944 (+)
RNA-Seq Expression	MS011880
Synteny	MS011880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCAAAGCAAATCAGAGAGCAGAGGGCTAGGCTTTATATCATCTGGAGATGTGCTGTGATGCTTCTATGCTGGCATGAT

mRNA sequence

TGTTCAAAGCAAATCAGAGAGCAGAGGGCTAGGCTTTATATCATCTGGAGATGTGCTGTGATGCTTCTATGCTGGCATGAT

Coding sequence (CDS)

TGTTCAAAGCAAATCAGAGAGCAGAGGGCTAGGCTTTATATCATCTGGAGATGTGCTGTGATGCTTCTATGCTGGCATGAT

Protein sequence

CSKQIREQRARLYIIWRCAVMLLCWHD

Homology

[Close]

BLAST of MS011880 vs. NCBI nr
Match: XP_016900743.1 (PREDICTED: uncharacterized protein LOC107991010 [Cucumis melo] >XP_022155612.1 uncharacterized protein LOC111022704 [Momordica charantia] >XP_031742630.1 uncharacterized protein LOC116404399 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. NCBI nr
Match: XP_022963517.1 (uncharacterized protein LOC111463822 [Cucurbita moschata] >XP_022967527.1 uncharacterized protein LOC111467006 [Cucurbita maxima] >XP_023553645.1 uncharacterized protein LOC111811136 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. NCBI nr
Match: XP_038888468.1 (uncharacterized protein LOC120078304 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CS+QIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSRQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. NCBI nr
Match: XP_030485700.1 (uncharacterized protein LOC115702372 [Cannabis sativa])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRC V+LLCWHD
Sbjct: 25 CSKQIREQRARLYIIWRCTVLLLCWHD 51

[Close]

BLAST of MS011880 vs. NCBI nr
Match: XP_017191210.1 (uncharacterized protein LOC108174586 [Malus domestica])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRC+VMLLCWH+
Sbjct: 25 CSKQIREQRARLYIIWRCSVMLLCWHE 51

[Close]

BLAST of MS011880 vs. ExPASy Swiss-Prot
Match: Q6IM87 (Small polypeptide DEVIL 14 OS=Arabidopsis thaliana OX=3702 GN=DVL14 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.7e-06
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQI+EQRARLYIIW+CAV LL  HD
Sbjct: 22 CSKQIKEQRARLYIIWKCAVFLLSSHD 48

[Close]

BLAST of MS011880 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-04
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          +REQ+A+LYII RC VMLLCWHD
Sbjct: 24 VREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS011880 vs. ExPASy Swiss-Prot
Match: Q9SAF8 (Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-04
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          ++EQRA+LYII RC VMLLCWHD
Sbjct: 19 LKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MS011880 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 3.4e-04
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          C++ ++EQRAR YI+ RC +ML+CW D
Sbjct: 56 CARLVKEQRARFYIMRRCVIMLICWRD 82

[Close]

BLAST of MS011880 vs. ExPASy Swiss-Prot
Match: Q6IM95 (Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 5.7e-04
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          +REQRA+LYII RC VMLLCW D
Sbjct: 18 LREQRAKLYIIKRCVVMLLCWQD 40

[Close]

BLAST of MS011880 vs. ExPASy TrEMBL
Match: A0A6J1HR28 (uncharacterized protein LOC111467006 OS=Cucurbita maxima OX=3661 GN=LOC111467006 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. ExPASy TrEMBL
Match: A0A6J1DPT9 (uncharacterized protein LOC111022704 OS=Momordica charantia OX=3673 GN=LOC111022704 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. ExPASy TrEMBL
Match: A0A6J1HFG6 (uncharacterized protein LOC111463822 OS=Cucurbita moschata OX=3662 GN=LOC111463822 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. ExPASy TrEMBL
Match: A0A1S4DXP1 (uncharacterized protein LOC107991010 OS=Cucumis melo OX=3656 GN=LOC107991010 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRCAVMLLCWHD
Sbjct: 12 CSKQIREQRARLYIIWRCAVMLLCWHD 38

[Close]

BLAST of MS011880 vs. ExPASy TrEMBL
Match: A0A2P5CXL6 (DEVIL-like protein OS=Parasponia andersonii OX=3476 GN=PanDVL5 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-07
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQIREQRARLYIIWRC V+LLCWHD
Sbjct: 23 CSKQIREQRARLYIIWRCTVLLLCWHD 49

[Close]

BLAST of MS011880 vs. TAIR 10
Match: AT3G63088.1 (ROTUNDIFOLIA like 14 )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-07
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          CSKQI+EQRARLYIIW+CAV LL  HD
Sbjct: 22 CSKQIKEQRARLYIIWKCAVFLLSSHD 48

[Close]

BLAST of MS011880 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 45.4 bits (106), Expect = 8.2e-06
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          +REQ+A+LYII RC VMLLCWHD
Sbjct: 24 VREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS011880 vs. TAIR 10
Match: AT1G68825.2 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 45.4 bits (106), Expect = 8.2e-06
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          +REQ+A+LYII RC VMLLCWHD
Sbjct: 24 VREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS011880 vs. TAIR 10
Match: AT1G13245.1 (ROTUNDIFOLIA like 17 )

HSP 1 Score: 45.1 bits (105), Expect = 1.1e-05
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 5  IREQRARLYIIWRCAVMLLCWHD 28
          ++EQRA+LYII RC VMLLCWHD
Sbjct: 19 LKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MS011880 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 43.9 bits (102), Expect = 2.4e-05
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 1  CSKQIREQRARLYIIWRCAVMLLCWHD 28
          C++ ++EQRAR YI+ RC +ML+CW D
Sbjct: 56 CARLVKEQRARFYIMRRCVIMLICWRD 82

The following BLAST results are available for this feature:

BLAST of MS011880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900743.1	1.8e-07	100.00	PREDICTED: uncharacterized protein LOC107991010 [Cucumis melo] >XP_022155612.1 u...	[more]
XP_022963517.1	1.8e-07	100.00	uncharacterized protein LOC111463822 [Cucurbita moschata] >XP_022967527.1 unchar...	[more]
XP_038888468.1	4.1e-07	96.30	uncharacterized protein LOC120078304 [Benincasa hispida]	[more]
XP_030485700.1	1.2e-06	92.59	uncharacterized protein LOC115702372 [Cannabis sativa]	[more]
XP_017191210.1	1.2e-06	92.59	uncharacterized protein LOC108174586 [Malus domestica]	[more]

BLAST of MS011880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IM87	2.7e-06	81.48	Small polypeptide DEVIL 14 OS=Arabidopsis thaliana OX=3702 GN=DVL14 PE=3 SV=1	[more]
Q6X5T8	1.2e-04	78.26	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]
Q9SAF8	1.5e-04	78.26	Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1	[more]
Q8S8S3	3.4e-04	55.56	Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1	[more]
Q6IM95	5.7e-04	78.26	Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1	[more]

BLAST of MS011880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HR28	8.9e-08	100.00	uncharacterized protein LOC111467006 OS=Cucurbita maxima OX=3661 GN=LOC111467006...	[more]
A0A6J1DPT9	8.9e-08	100.00	uncharacterized protein LOC111022704 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1HFG6	8.9e-08	100.00	uncharacterized protein LOC111463822 OS=Cucurbita moschata OX=3662 GN=LOC1114638...	[more]
A0A1S4DXP1	8.9e-08	100.00	uncharacterized protein LOC107991010 OS=Cucumis melo OX=3656 GN=LOC107991010 PE=...	[more]
A0A2P5CXL6	5.7e-07	92.59	DEVIL-like protein OS=Parasponia andersonii OX=3476 GN=PanDVL5 PE=4 SV=1	[more]

BLAST of MS011880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63088.1	2.0e-07	81.48	ROTUNDIFOLIA like 14	[more]
AT1G68825.1	8.2e-06	78.26	ROTUNDIFOLIA like 15	[more]
AT1G68825.2	8.2e-06	78.26	ROTUNDIFOLIA like 15	[more]
AT1G13245.1	1.1e-05	78.26	ROTUNDIFOLIA like 17	[more]
AT2G39705.1	2.4e-05	55.56	ROTUNDIFOLIA like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 6..24 e-value: 3.5E-13 score: 49.0
None	No IPR available	PANTHER	PTHR33102:SF58	SUBFAMILY NOT NAMED	coord: 1..27
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011880.1	MS011880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation