MS011874 (gene) Bitter gourd (TR) v1

Overview


Name	MS011874
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sm-like protein LSM2
Location	scaffold1150: 148377 .. 150745 (+)
RNA-Seq Expression	MS011874
Synteny	MS011874

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGGTACATAACTTCTTTACATATATTATATTTAAGCGATATAATTGATTGCTTATTTTATGGGCTCACGCACTCTGATGAGACCTGTGCTTCAGACGAGGGTTACTTCGAATTTGTTTTTATTTGTTTAGCATTTATGGTAGGCACATTCCTCCTCCTCATTCTGCTTATTTTGTATTCCACTTACCCTTTTATGCTCTCTTGATTATATTAATTGAAAGATTTTCTGGCGAGATGTATGATATATGCTTATATTCACAGATTATTTGTAGCACAGTTTGGTATCTTCATCTTAACATTCATTTTCTTTTCATCCATTGCTCTTTCATGAATTTTCTTTAGCTAAATATTTCTAGTAATTTTGTGGGTGGTTCTCAATTCGGTGGATTTCTCTCTTGTCACTTGGCTAGAGTTCCTAGCGGGGACCATCCGTTTCTTTCTTGCTGATTTTGAAGGGGGAGAGTAACAGGGGTTTATTATATTTAGTGCGAGTCTTCTTTATGTTTTTCTATTCCGTTTCTTTTTGGATCTCCACGTCCTGTTCTGGCAACTTATGATGACATTTCGCCCCCTCTTCTTCTCGTAAACTAAATATTTGATGCAAGTTAAATTTATCAGTGTGATAAATTTGACTATGGTCAACACAGCACTTATATATATATATATAGTACATAAATGTGGAGATTGGAGATCAAAACTTCAACGGAAGGGAACGTAATAGGTGACTTATCTACGTAGCTATAGTTGGATTAACTATGAATCCATTATATTTTTATGTCAATTTCAGTATTCTTACAGATTATACACATTGATTGGAATCAATGAATGTGAATTGTTTAAGAGAGAAGTCGGAAATATTTATGAATGTAGAGGGTTTCCTGGTTGAGCTTAATTTGATTTTCTAATCCCACTAGGAAGCTAAAAGACTAGTTCTTATTGACTATCAGGTGCATGTTGTATCTAGTTCATGATTTTTTTCGCCAACTACTCAACTTAACAAACTTTTATGATGTAGGAGATTAGAAGGAACTTTTTTGGTATTAATTGTTGTTTTTTAGCTACAATTTATTAATTATTTTTAGTCGGAGATTGACCTGTTTGCCAAGTAGTTTTGTAGATTAATTGCTTTTAGTTAGTTAGTTATTTTTTCGGTTAGTTGGCTACTACCCTACCTGTATAATAAAGGGATGATCTTTTGTATCTTCAACACTTTTTGAATGGGATAGAATTTTTTGTTTCCGAGTCTAAATGTCGATTGGGGGAGAACTCTCATTTAATATTCATGCAAATATCTGAAGAGGCCAAGAAATGGTGGTGCTTATAGAGCTGGACCATCTTCAGAAAAATCAGACCAAAAACACTCGTTTTGTATCAAGAAAGTAGTTTTATAGATCGTGTAACTAAACACATAGCCTAAGTGCTGTGGTGTGTTTATTATTATTATTTTATCTTACCAAATCTTAGTTTAACACAACTTGTTACAAAGGTACCATCTTCATTCTTCAGCCTCTGTTCAATATCTGGCGGTGATTTCTGATAGATTCCAAATCCTTCTGTGGCTTCCTGTGAGTCGTAAGGCCACAGTTTTTAAGAAAGTAAAATTTCGAAACCAATCATGGTTGTGCTGTATAAACTTTGGTTTAAAAGATGTCGTAGGATGGGTATGGGATATATAAGAATGAGTTTGAAGTGTATGAACAGGAACTTTTTCCCAGTCTCTAGTTCTTGTTCTTTGTGGAATGAGTTTTTTTTTTTTATTCTTCTTTCTTGATACAAGCCAATACGAAATTTCCCTTCGGTCACATATAAAAAATCTGAATGTAGGTAGTAGGAAGACTTACTGTTGTTGCTTGTTGGTTGCTGATTCTTTTATGGTTGGTGAATACTCTTGTTTTTGCTTGACCAAAAACATATGCAAATCTCATATATATATAAAAGAAGAAGGAAGAAAGAAAAAAGAACATCTGCAAATCCATTATTTCATTATGTTCTGCCCTGCGGTCTTAAATTTACTGTGCCCGTATCCATCATGTAATCTGCTGCCTGTAATTTTGTTGTCTTGAACTAATCGTGAATTTTTTTTCTCATTTCAGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

mRNA sequence

CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

Coding sequence (CDS)

CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCAATTAGAGGAACTTTGCACTCTGTCGATCAGTATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATTGAGCTCTTGCATGATGCTACAAGACGCGAGGCTCGGGGTGGC

Protein sequence

QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Homology

[Close]

BLAST of MS011874 vs. NCBI nr
Match: MBA0708852.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 193.4 bits (490), Expect = 9.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MS011874 vs. NCBI nr
Match: THG15486.1 (hypothetical protein TEA_020719 [Camellia sinensis var. sinensis])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 348 ELFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 407

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 408 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 440

[Close]

BLAST of MS011874 vs. NCBI nr
Match: CAA2970238.1 (sm LSM2 [Olea europaea subsp. europaea] >CAA3028287.1 sm LSM2 [Olea europaea subsp. europaea])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          QLFFSYFKDLVGREVTVELKNDLA+RGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 2  QLFFSYFKDLVGREVTVELKNDLALRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 61

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 62 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94

[Close]

BLAST of MS011874 vs. NCBI nr
Match: OWM87166.1 (hypothetical protein CDL15_Pgr010198 [Punica granatum])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 446 KLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 505

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 506 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 538

[Close]

BLAST of MS011874 vs. NCBI nr
Match: MBA0715229.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 2  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 61

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 62 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 94

[Close]

BLAST of MS011874 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          IRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 62 IRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of MS011874 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.1e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCF
Sbjct: 2  LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRREA 91
          IRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 62 IRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MS011874 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.1e-33
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCF
Sbjct: 2  LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRREA 91
          IRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 62 IRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of MS011874 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30
Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCF
Sbjct: 2  LFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          IRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 62 IRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]

BLAST of MS011874 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-26
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN F
Sbjct: 2  LFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRRE 90
          IRGS VRYV L  + VD  LL DATRRE
Sbjct: 62 IRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of MS011874 vs. ExPASy TrEMBL
Match: A0A7J8ZBA4 (Sm domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_023938 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of MS011874 vs. ExPASy TrEMBL
Match: A0A4S4EHZ0 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_020719 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.7e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 348 ELFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 407

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 408 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 440

[Close]

BLAST of MS011874 vs. ExPASy TrEMBL
Match: A0A061DXU9 (BTB-POZ and MATH domain 2 OS=Theobroma cacao OX=3641 GN=TCM_004456 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 401 RLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 460

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 461 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 493

[Close]

BLAST of MS011874 vs. ExPASy TrEMBL
Match: A0A1R3I5D7 (BTB/POZ-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14828 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 401 RLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 460

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 461 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 493

[Close]

BLAST of MS011874 vs. ExPASy TrEMBL
Match: F6HQ57 (Sm-like protein LSM2 OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00560 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 5  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 64

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Sbjct: 65 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 97

[Close]

BLAST of MS011874 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-46
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 2  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
          LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 2  LFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61

Query: 62 IRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          IRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 62 IRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of MS011874 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHLSLRGN 65

Query: 66 VVRYVQLPPDGVDIELL 83
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MS011874 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHLSLRGN 65

Query: 66 VVRYVQLPPDGVDIELL 83
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MS011874 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+
Sbjct: 6  FLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNP--VTLDHLSVRGN 65

Query: 66 VVRYVQLPPDGVDIELL 83
           +RY  L PD +++E L
Sbjct: 66 NIRYYIL-PDSLNLETL 79

[Close]

BLAST of MS011874 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 66 VVRYV 71
           V Y+
Sbjct: 78 NVLYI 80

The following BLAST results are available for this feature:

BLAST of MS011874 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0708852.1	9.0e-46	100.00	hypothetical protein [Gossypium laxum]	[more]
THG15486.1	2.0e-45	98.92	hypothetical protein TEA_020719 [Camellia sinensis var. sinensis]	[more]
CAA2970238.1	2.0e-45	97.85	sm LSM2 [Olea europaea subsp. europaea] >CAA3028287.1 sm LSM2 [Olea europaea sub...	[more]
OWM87166.1	2.6e-45	98.92	hypothetical protein CDL15_Pgr010198 [Punica granatum]	[more]
MBA0715229.1	2.6e-45	98.92	hypothetical protein [Gossypium laxum]	[more]

BLAST of MS011874 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H595	1.6e-45	94.57	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
Q9Y333	9.1e-33	74.16	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
O35900	9.1e-33	74.16	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
Q54TF6	3.2e-30	66.67	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
P38203	2.2e-26	65.91	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MS011874 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8ZBA4	4.4e-46	100.00	Sm domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_023...	[more]
A0A4S4EHZ0	9.7e-46	98.92	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0207...	[more]
A0A061DXU9	1.3e-45	98.92	BTB-POZ and MATH domain 2 OS=Theobroma cacao OX=3641 GN=TCM_004456 PE=3 SV=1	[more]
A0A1R3I5D7	1.3e-45	98.92	BTB/POZ-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14828 PE=3 SV=...	[more]
F6HQ57	1.3e-45	98.92	Sm-like protein LSM2 OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00560 PE=3 SV=1	[more]

BLAST of MS011874 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03330.1	1.1e-46	94.57	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	2.4e-04	29.87	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	4.1e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..72 e-value: 1.3E-17 score: 74.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..71 e-value: 7.8E-17 score: 60.7
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 9.4E-32 score: 110.3
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PIRSF	PIRSF016394	Lsm2	coord: 1..93 e-value: 1.2E-50 score: 167.5
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 2..91
IPR016654	U6 snRNA-associated Sm-like protein LSm2	CDD	cd01725	LSm2	coord: 2..90 e-value: 2.87395E-62 score: 181.633
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011874.1	MS011874.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing