MS011799 (gene) Bitter gourd (TR) v1

Overview
NameMS011799
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLeucine-rich repeat extensin-like protein 4
Locationscaffold11: 807209 .. 807484 (-)
RNA-Seq ExpressionMS011799
SyntenyMS011799
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCCCACCGCCACCATCACCGTCACCTCCGCCGCCCATCCAGTACCTACCTCCGCCGTCGCCTTCACCACCACCTCCCCCAGTTTATCACTCACCTCCTCCTCCGTTGCAGTCACCACCGCCGCCGCCGCCTGCATCCCCACCACCATCCCCTGTATACGAAGGCCCATTGCCACCAATCTATGGAATTCCGTATGCCTCTCCTCCACCTCCACCCTTCTATTGATTCTTTTGAGAAATTTTCCTCCTCTAACCTTACCTCAACCCACAGA

mRNA sequence

ATGAACCCCCACCGCCACCATCACCGTCACCTCCGCCGCCCATCCAGTACCTACCTCCGCCGTCGCCTTCACCACCACCTCCCCCAGTTTATCACTCACCTCCTCCTCCGTTGCAGTCACCACCGCCGCCGCCGCCTGCATCCCCACCACCATCCCCTGTATACGAAGGCCCATTGCCACCAATCTATGGAATTCCGTATGCCTCTCCTCCACCTCCACCCTTCTATTGATTCTTTTGAGAAATTTTCCTCCTCTAACCTTACCTCAACCCACAGA

Coding sequence (CDS)

ATGAACCCCCACCGCCACCATCACCGTCACCTCCGCCGCCCATCCAGTACCTACCTCCGCCGTCGCCTTCACCACCACCTCCCCCAGTTTATCACTCACCTCCTCCTCCGTTGCAGTCACCACCGCCGCCGCCGCCTGCATCCCCACCACCATCCCCTGTATACGAAGGCCCATTGCCACCAATCTATGGAATTCCGTATGCCTCTCCTCCACCTCCACCCTTCTATTGATTCTTTTGAGAAATTTTCCTCCTCTAACCTTACCTCAACCCACAGA

Protein sequence

MNPHRHHHRHLRRPSSTYLRRRLHHHLPQFITHLLLRCSHHRRRRLHPHHHPLYTKAHCHQSMEFRMPLLHLHPSIDSFEKFSSSNLTSTHR
Homology
[Close]
BLAST of MS011799 vs. NCBI nr
Match: KAA0061563.1 (leucine-rich repeat extensin-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 57  AHCHQSMEFRMPLLHLHPSIDSFEKFSSSNLTST 91
           AHCHQSMEFR   LHLHPSIDSFEKFS+SNLTST
Sbjct: 436 AHCHQSMEFRTLPLHLHPSIDSFEKFSTSNLTST 469

[Close]
BLAST of MS011799 vs. NCBI nr
Match: TYK10709.1 (leucine-rich repeat extensin-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 57  AHCHQSMEFRMPLLHLHPSIDSFEKFSSSNLTST 91
           AHCHQSMEFR   LHLHPSIDSFEKFS+SNLTST
Sbjct: 442 AHCHQSMEFRTLPLHLHPSIDSFEKFSTSNLTST 475

[Close]
BLAST of MS011799 vs. ExPASy TrEMBL
Match: A0A5D3CKG5 (Leucine-rich repeat extensin-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 57  AHCHQSMEFRMPLLHLHPSIDSFEKFSSSNLTST 91
           AHCHQSMEFR   LHLHPSIDSFEKFS+SNLTST
Sbjct: 442 AHCHQSMEFRTLPLHLHPSIDSFEKFSTSNLTST 475

[Close]
BLAST of MS011799 vs. ExPASy TrEMBL
Match: A0A5A7V0A1 (Leucine-rich repeat extensin-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001250 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 57  AHCHQSMEFRMPLLHLHPSIDSFEKFSSSNLTST 91
           AHCHQSMEFR   LHLHPSIDSFEKFS+SNLTST
Sbjct: 436 AHCHQSMEFRTLPLHLHPSIDSFEKFSTSNLTST 469

The following BLAST results are available for this feature:
BLAST of MS011799 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061563.11.8e-0688.24leucine-rich repeat extensin-like protein 4 [Cucumis melo var. makuwa][more]
TYK10709.11.8e-0688.24leucine-rich repeat extensin-like protein 4 [Cucumis melo var. makuwa][more]
BLAST of MS011799 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS011799 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CKG58.8e-0788.24Leucine-rich repeat extensin-like protein 4 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7V0A18.8e-0788.24Leucine-rich repeat extensin-like protein 4 OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of MS011799 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011799.1MS011799.1mRNA