MS011760 (gene) Bitter gourd (TR) v1

Overview
NameMS011760
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold11: 478810 .. 479050 (+)
RNA-Seq ExpressionMS011760
SyntenyMS011760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAAATAGTTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

mRNA sequence

AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAATTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

Coding sequence (CDS)

AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAATTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

Protein sequence

RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWRRIILSKYGPHPIETSLELH
Homology
[Close]
BLAST of MS011760 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW+GV E GG+HL+ W+ V   L  GGLG+G L       L   LW FF E   LWR
Sbjct: 197 RDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWR 256

Query: 61  RIILSKYGPHP 72
           +II+SKY  HP
Sbjct: 257 KIIVSKYERHP 267

[Close]
BLAST of MS011760 vs. NCBI nr
Match: RVX06748.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HLIRWE V  +  +GGLG GK      V L   LW F +E   LW 
Sbjct: 402 RDFLWSGVEEGNKDHLIRWEVVSRSREMGGLGFGKTSMRNSVLLRKWLWRFPRERSGLWH 461

Query: 61  RIILSKYGPHP 72
           ++I S YG HP
Sbjct: 462 KVIASIYGTHP 472

[Close]
BLAST of MS011760 vs. NCBI nr
Match: CAN83427.1 (hypothetical protein VITISV_009103 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V  +  +GGLGIGK+       L   LW F +E  +LW 
Sbjct: 524 RDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 583

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 584 QVILSIYGTH 593

[Close]
BLAST of MS011760 vs. NCBI nr
Match: RVX14083.1 (Histone deacetylase 15 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V     LGGLGIGK+       L   LW F +E  +LW 
Sbjct: 439 RDFLWSGVGEGKRDHLVRWEAVCKPRVLGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 498

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 499 QVILSIYGTH 508

[Close]
BLAST of MS011760 vs. NCBI nr
Match: RVW15726.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V    ++GGLGIGK+       L   LW F +E  +LW 
Sbjct: 535 RDFLWSGVGEGKRDHLVRWEAVSKPRSIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 594

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 595 QVILSLYGTH 604

[Close]
BLAST of MS011760 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.4e-13
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW+GV E GG+HL+ W+ V   L  GGLG+G L       L   LW FF E   LWR
Sbjct: 197 RDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWR 256

Query: 61  RIILSKYGPHP 72
           +II+SKY  HP
Sbjct: 257 KIIVSKYERHP 267

[Close]
BLAST of MS011760 vs. ExPASy TrEMBL
Match: A0A438JCR4 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_806 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HLIRWE V  +  +GGLG GK      V L   LW F +E   LW 
Sbjct: 402 RDFLWSGVEEGNKDHLIRWEVVSRSREMGGLGFGKTSMRNSVLLRKWLWRFPRERSGLWH 461

Query: 61  RIILSKYGPHP 72
           ++I S YG HP
Sbjct: 462 KVIASIYGTHP 472

[Close]
BLAST of MS011760 vs. ExPASy TrEMBL
Match: A5BN97 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_009103 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V  +  +GGLGIGK+       L   LW F +E  +LW 
Sbjct: 524 RDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 583

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 584 QVILSIYGTH 593

[Close]
BLAST of MS011760 vs. ExPASy TrEMBL
Match: A0A438JYQ9 (Histone deacetylase OS=Vitis vinifera OX=29760 GN=HDA15_1 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V     LGGLGIGK+       L   LW F +E  +LW 
Sbjct: 439 RDFLWSGVGEGKRDHLVRWEAVCKPRVLGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 498

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 499 QVILSIYGTH 508

[Close]
BLAST of MS011760 vs. ExPASy TrEMBL
Match: A5BYB2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_031500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V    ++GGLGIGK+       L   LW F +E  +LW 
Sbjct: 582 RDFLWSGVGEGKRDHLVRWEAVCKPRSIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 641

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 642 QVILSIYGTH 651

The following BLAST results are available for this feature:
BLAST of MS011760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151711.11.1e-1252.11uncharacterized protein LOC111019624 [Momordica charantia][more]
RVX06748.14.0e-1049.30putative ribonuclease H protein [Vitis vinifera][more]
CAN83427.15.2e-1048.57hypothetical protein VITISV_009103 [Vitis vinifera][more]
RVX14083.15.2e-1050.00Histone deacetylase 15 [Vitis vinifera][more]
RVW15726.16.8e-1048.57putative ribonuclease H protein [Vitis vinifera][more]
BLAST of MS011760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS011760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFI25.4e-1352.11uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A438JCR41.9e-1049.30Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_806 P... [more]
A5BN972.5e-1048.57Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438JYQ92.5e-1050.00Histone deacetylase OS=Vitis vinifera OX=29760 GN=HDA15_1 PE=4 SV=1[more]
A5BYB23.3e-1048.57Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
BLAST of MS011760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011760.1MS011760.1mRNA