MS011728 (gene) Bitter gourd (TR) v1

Overview


Name	MS011728
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Location	scaffold11: 199353 .. 201433 (-)
RNA-Seq Expression	MS011728
Synteny	MS011728

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGTCTCCATTCAGGCTTGATATTGATGAGCTGATCACTGAATATGCTGAGGTAGCTCTTAACCACTTCGAAATTTTGTTGAATTCCTCTTTGTGCTAACTTGAATATTGAAAGATGTTAGTTTTTGAATCTCTAACCCATGGGTACAGGGTGGATATACATCTTTTGCGGATATGAAAAATGTATGGACTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCCAACTTAGCATTCTTTATGCAGTCGATGTATGCGCAATCAATTGGTAGGCTCTAGCATAATCAACTTGGTCATTTATACATTAACTTGTTGGAAAATTGGCTGTTTCTTCTAAATTATGATGAACAAAGCTCTTTACTTCAATTTGTTGTTTTTCTTGAGGTGAAAGTTTCTACTATGTGTTACTAAGAAGAATCTTAACACTTCCTTTTACAGGCCACATGGTCGGTACTGCTTCTTTGTCACGCAGACTAGGTGGTTTTTATTGCCTTTACTGCCTTTACGAAACACAACCGTTTAAGCCCCCTTATAAAATCTACCTATCTATAGGTATGATTTTTCAAAATCAATATATATGTAAATTTTGCCTATTTCTTCTTTGGTTATTGGTTATTTTACTGCTCTCCCACATTTATAGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAAGAATGTAAAAGTGGCATCTGCTGTGGCGAAAAAAATGTTAGAAAAGAACATGTTCCTCTTTGGGTCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACTGTGAATCAACTCACAGAATTGCAAAATGCCCGCATTCAAGTCGCCTATAATAAGTATGTTAGACAAACCGATGATTGCTCTTTTTATTTGAGATATATTGTATTTTTCATGATATCTTTATAGCACTTCATCTCATTAATCCTCGATTTCTACTTTTGTCTAGGTTATTTTCGGATACCCCAATAGAAGATTATATCCATATGGACTTGGTAAGTGAAAAGTATAGAAATTTATGGCCCATTTAATGACGTCCTTGTTTCTTGTTTCTCATTTCCTCTCTTTTGTTCATCGTTTCCTTGTTTTTAATTAAGGAAACATAACTATGTTTAGTAGGTGTTTCTTGTTCCTTGTTCTTTTTTTTTCCAAACATGTTTGGTAACCATTTCTTGTTTTCTTCTTCTCTAAAATTTAAGATTAAAAGAAGTAAAAGTTTTATATGAAATTTAATATTTCAAATTAAATATTTAAAACTTTTATGTTATATTTATTGTGTATTTTAAAATAAAAATGATAAATAATGCTTTTATCTATGTTTGGAAAAAAGATAGAAAATAACAACAAGAAACTTGATTTTGTTGTTTCTAAAATTTCTACACAGTTTTGGAAAAGTTTCTTAAAAATAAGAAACGAGAAACATGAACGTTATTAAATGCTTATGTTTCTCAAACATTGGAAACGAAAAACAAGAAACAAAAAATAGGAACGTTACTAAACGGGTCTTTAGCTGCTTTGTTTCTGAACCACTAAATTTTAGTACTCGTTTAACTTACTTTGCGAACGCTCTATTATTCTATCTTTCTCTTTGAATTTTTCTTAACCTCATTAATACAGGGGATGGAAGTTGGTTTGAATGTATTAAAAAAGATGTCAACAGATTATTCAGAGGCTAAGAAGCTTGCATTATATGGTAATTTCTATCATCCCAATCTGTTGTCTCTCTATTGTCTGTTCTTTATGATCTTTGATGTAGATACTTCTTTCTGTATAAGTTTAACTCATTTTTTCCTCTGCCTTCTCCGTCTTGGCACCTAATTTATTTCTAAAGAAGCAAGTGACATCCTGGACGTCCAGGACATAAAGCACATATCAGAAGATGATAGATTGATTGGAGATACAGTAGAACAGATTGCTGAGAACTGGAATGTTCAAAGAGGAGTTTTTTATGAACAAACCGGACTTGACCGTCAGCTTGTTCCAGTCGAAGCACACAAAGAGAATCAGTTACTAGTACATCATGCCGATGAAAATTTTGACAAGGAACTTGAAAGAATGCTAACCGATATT

mRNA sequence

ATGAATCTGTCTCCATTCAGGCTTGATATTGATGAGCTGATCACTGAATATGCTGAGGGTGGATATACATCTTTTGCGGATATGAAAAATGTATGGACTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCCAACTTAGCATTCTTTATGCAGTCGATGTATGCGCAATCAATTGGCCACATGGTCGGTACTGCTTCTTTGTCACGCAGACTAGGTGGTTTTTATTGCCTTTACTGCCTTTACGAAACACAACCGTTTAAGCCCCCTTATAAAATCTACCTATCTATAGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAAGAATGTAAAAGTGGCATCTGCTGTGGCGAAAAAAATGTTAGAAAAGAACATGTTCCTCTTTGGGTCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACTGTGAATCAACTCACAGAATTGCAAAATGCCCGCATTCAAGTCGCCTATAATAAGTTATTTTCGGATACCCCAATAGAAGATTATATCCATATGGACTTGGGGATGGAAGTTGGTTTGAATGTATTAAAAAAGATGTCAACAGATTATTCAGAGGCTAAGAAGCTTGCATTATATGAAGCAAGTGACATCCTGGACGTCCAGGACATAAAGCACATATCAGAAGATGATAGATTGATTGGAGATACAGTAGAACAGATTGCTGAGAACTGGAATGTTCAAAGAGGAGTTTTTTATGAACAAACCGGACTTGACCGTCAGCTTGTTCCAGTCGAAGCACACAAAGAGAATCAGTTACTAGTACATCATGCCGATGAAAATTTTGACAAGGAACTTGAAAGAATGCTAACCGATATT

Coding sequence (CDS)

ATGAATCTGTCTCCATTCAGGCTTGATATTGATGAGCTGATCACTGAATATGCTGAGGGTGGATATACATCTTTTGCGGATATGAAAAATGTATGGACTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCCAACTTAGCATTCTTTATGCAGTCGATGTATGCGCAATCAATTGGCCACATGGTCGGTACTGCTTCTTTGTCACGCAGACTAGGTGGTTTTTATTGCCTTTACTGCCTTTACGAAACACAACCGTTTAAGCCCCCTTATAAAATCTACCTATCTATAGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAAGAATGTAAAAGTGGCATCTGCTGTGGCGAAAAAAATGTTAGAAAAGAACATGTTCCTCTTTGGGTCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACTGTGAATCAACTCACAGAATTGCAAAATGCCCGCATTCAAGTCGCCTATAATAAGTTATTTTCGGATACCCCAATAGAAGATTATATCCATATGGACTTGGGGATGGAAGTTGGTTTGAATGTATTAAAAAAGATGTCAACAGATTATTCAGAGGCTAAGAAGCTTGCATTATATGAAGCAAGTGACATCCTGGACGTCCAGGACATAAAGCACATATCAGAAGATGATAGATTGATTGGAGATACAGTAGAACAGATTGCTGAGAACTGGAATGTTCAAAGAGGAGTTTTTTATGAACAAACCGGACTTGACCGTCAGCTTGTTCCAGTCGAAGCACACAAAGAGAATCAGTTACTAGTACATCATGCCGATGAAAATTTTGACAAGGAACTTGAAAGAATGCTAACCGATATT

Protein sequence

MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSIGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVASAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDLGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQRGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI

Homology

[Close]

BLAST of MS011728 vs. NCBI nr
Match: XP_022143014.1 (uncharacterized protein LOC111013003 [Momordica charantia])

HSP 1 Score: 564.3 bits (1453), Expect = 5.9e-157
Identity = 284/285 (99.65%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI
Sbjct: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS
Sbjct: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AVAK+MLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL
Sbjct: 121 AVAKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ
Sbjct: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI
Sbjct: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 285

[Close]

BLAST of MS011728 vs. NCBI nr
Match: XP_023536865.1 (uncharacterized protein LOC111798120 [Cucurbita pepo subsp. pepo] >XP_023536866.1 uncharacterized protein LOC111798120 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480.7 bits (1236), Expect = 8.6e-132
Identity = 241/285 (84.56%), Postives = 263/285 (92.28%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEKNVKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAY+KLF+DTPIED+IHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDKLFADTPIEDHIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEAS+I+DVQDIKHISED+ LIGDTVE+IAE+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RG FYEQ G D+QL  VEAH+E +   HHADENFD ELERMLTD+
Sbjct: 241 RGAFYEQVGHDQQLALVEAHEEQE---HHADENFDMELERMLTDV 282

[Close]

BLAST of MS011728 vs. NCBI nr
Match: XP_022965853.1 (uncharacterized protein LOC111465616 [Cucurbita maxima])

HSP 1 Score: 479.9 bits (1234), Expect = 1.5e-131
Identity = 240/285 (84.21%), Postives = 263/285 (92.28%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEKNVKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNE+SALETVNQLTELQNARI+VAY+KLF+DTPIEDYIHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNENSALETVNQLTELQNARIRVAYDKLFADTPIEDYIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEAS+I+DVQDIKHISED+ LIGDTVE+I E+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIVEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQ G D+QL  VEAH+E +   HHADENFD ELERMLTD+
Sbjct: 241 RGVFYEQVGHDQQLALVEAHEEQE---HHADENFDMELERMLTDV 282

[Close]

BLAST of MS011728 vs. NCBI nr
Match: XP_022938175.1 (uncharacterized protein LOC111444339 [Cucurbita moschata])

HSP 1 Score: 479.6 bits (1233), Expect = 1.9e-131
Identity = 241/285 (84.56%), Postives = 263/285 (92.28%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEK VKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKTVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNESSALETVNQLTELQNARI+VAY+KLF+DTPIED+IHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIRVAYDKLFADTPIEDHIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEASDI+DVQDIKHISED+ LIGDTVE+IAE+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASDIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQ G D+QL  VEAH+E +   HHADENFD ELERMLTD+
Sbjct: 241 RGVFYEQVGHDQQLALVEAHEEQE---HHADENFDVELERMLTDV 282

[Close]

BLAST of MS011728 vs. NCBI nr
Match: KAG7021228.1 (hypothetical protein SDJN02_17916 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-130
Identity = 239/285 (83.86%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEKNVKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNESSALETVNQLTELQNARI+VAY+KLF+DTPIED+IHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIRVAYDKLFADTPIEDHIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEAS+I+DVQDIKHISED+ LIGDTVE+IAE+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RG FYEQ G D+QL  VEAH+E +   HH DENFD ELERMLTD+
Sbjct: 241 RGAFYEQVGHDQQLALVEAHEEKE---HHDDENFDMELERMLTDV 282

[Close]

BLAST of MS011728 vs. ExPASy TrEMBL
Match: A0A6J1CN36 (uncharacterized protein LOC111013003 OS=Momordica charantia OX=3673 GN=LOC111013003 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.9e-157
Identity = 284/285 (99.65%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI
Sbjct: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS
Sbjct: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AVAK+MLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL
Sbjct: 121 AVAKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ
Sbjct: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI
Sbjct: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 285

[Close]

BLAST of MS011728 vs. ExPASy TrEMBL
Match: A0A6J1HQ65 (uncharacterized protein LOC111465616 OS=Cucurbita maxima OX=3661 GN=LOC111465616 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 7.1e-132
Identity = 240/285 (84.21%), Postives = 263/285 (92.28%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEKNVKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNE+SALETVNQLTELQNARI+VAY+KLF+DTPIEDYIHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNENSALETVNQLTELQNARIRVAYDKLFADTPIEDYIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEAS+I+DVQDIKHISED+ LIGDTVE+I E+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIVEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQ G D+QL  VEAH+E +   HHADENFD ELERMLTD+
Sbjct: 241 RGVFYEQVGHDQQLALVEAHEEQE---HHADENFDMELERMLTDV 282

[Close]

BLAST of MS011728 vs. ExPASy TrEMBL
Match: A0A6J1FIY6 (uncharacterized protein LOC111444339 OS=Cucurbita moschata OX=3662 GN=LOC111444339 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.3e-132
Identity = 241/285 (84.56%), Postives = 263/285 (92.28%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPSNLAFFMQSMYAQSI 60
           M+LSPFRLDIDELI EYAEGG+TSFADMK VW GRKFTYIFEAAP NLAFFMQSMYAQ+I
Sbjct: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTI 60

Query: 61  GHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVAS 120
           GHMV TASLS RLGG YCLY LYETQPFKP YKIYLSIGELKKLKEL+V+AKEK VKVAS
Sbjct: 61  GHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKTVKVAS 120

Query: 121 AVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMDL 180
           AV K+MLEKNMFLFGSVDMNESSALETVNQLTELQNARI+VAY+KLF+DTPIED+IHM+L
Sbjct: 121 AVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIRVAYDKLFADTPIEDHIHMNL 180

Query: 181 GMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNVQ 240
           GME GLN+LKKMS+DYSEAKK+ALYEASDI+DVQDIKHISED+ LIGDTVE+IAE+WNVQ
Sbjct: 181 GMEAGLNILKKMSSDYSEAKKVALYEASDIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQ 240

Query: 241 RGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           RGVFYEQ G D+QL  VEAH+E +   HHADENFD ELERMLTD+
Sbjct: 241 RGVFYEQVGHDQQLALVEAHEEQE---HHADENFDVELERMLTDV 282

[Close]

BLAST of MS011728 vs. ExPASy TrEMBL
Match: A0A5A7VCA1 (Putative mediator of RNA polymerase II transcription subunit 26 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00640 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.6e-128
Identity = 237/286 (82.87%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPS-NLAFFMQSMYAQS 60
           M+LSPFRLDIDELI E+AE G+TSF DMK VW GRKFTYIFEAAPS NLAFFMQS++AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           I HM   ASL  RLGG YCLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKE NVKV 
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           S V K+MLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAYNKLF+DTPIE+YIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           LGMEVG N+L KMSTDYSEAKKLALYEAS I+DVQDIKHI+ED++LIGDTVE+IAE+WNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           QRGVFYEQTGLD+QL+PVEA  + QLL  H D NFDKELERMLTD+
Sbjct: 241 QRGVFYEQTGLDQQLIPVEA--DQQLLEDHTDVNFDKELERMLTDV 284

[Close]

BLAST of MS011728 vs. ExPASy TrEMBL
Match: A0A0A0LL25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008040 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.7e-128
Identity = 237/286 (82.87%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAPS-NLAFFMQSMYAQS 60
           M+LSPFRLDIDELI E+AE G+TSF DMK VW GRKFTYIFEAAPS NLAFFMQS++AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           I HM+ TASL  RLGG YCLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKE NVKV 
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           S V K+MLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY KLF+DTPI +YIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           LGMEVG N+L KMSTDYSEAKKLALYEAS I+DVQDIKHI+ED++LIGDTVE+IAE+WNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 286
           QRGVFYEQTGLD+Q VPVEA  + QLL  HAD NFDKELERMLTD+
Sbjct: 241 QRGVFYEQTGLDQQSVPVEA--DQQLLEDHADVNFDKELERMLTDV 284

[Close]

BLAST of MS011728 vs. TAIR 10
Match: AT3G53270.1 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.5e-86
Identity = 163/290 (56.21%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60
           MNLSPF+ DIDELI E+ E   T+FADMK+VW  RKF++I+EA+P SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           IGHMV   S SRRLGG YCLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           +AVAKKML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           +G EV LN L KMS +Y+EAKK A+  A +I+++ DIKHISE+  L+G+ +E++ E W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------RQLVPVEAHKENQLLVHHADENFDKELERMLT 284
           QR  FYEQT LD      +QL  VE         H  D+ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVE---------HDEDDGFD-ELDRLLS 278

[Close]

BLAST of MS011728 vs. TAIR 10
Match: AT3G53270.4 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.5e-86
Identity = 163/290 (56.21%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60
           MNLSPF+ DIDELI E+ E   T+FADMK+VW  RKF++I+EA+P SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           IGHMV   S SRRLGG YCLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           +AVAKKML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           +G EV LN L KMS +Y+EAKK A+  A +I+++ DIKHISE+  L+G+ +E++ E W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------RQLVPVEAHKENQLLVHHADENFDKELERMLT 284
           QR  FYEQT LD      +QL  VE         H  D+ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVE---------HDEDDGFD-ELDRLLS 278

[Close]

BLAST of MS011728 vs. TAIR 10
Match: AT3G53270.3 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.5e-86
Identity = 163/290 (56.21%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60
           MNLSPF+ DIDELI E+ E   T+FADMK+VW  RKF++I+EA+P SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           IGHMV   S SRRLGG YCLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           +AVAKKML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           +G EV LN L KMS +Y+EAKK A+  A +I+++ DIKHISE+  L+G+ +E++ E W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------RQLVPVEAHKENQLLVHHADENFDKELERMLT 284
           QR  FYEQT LD      +QL  VE         H  D+ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVE---------HDEDDGFD-ELDRLLS 278

[Close]

BLAST of MS011728 vs. TAIR 10
Match: AT3G53270.2 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.5e-86
Identity = 163/290 (56.21%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60
           MNLSPF+ DIDELI E+ E   T+FADMK+VW  RKF++I+EA+P SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           IGHMV   S SRRLGG YCLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           +AVAKKML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           +G EV LN L KMS +Y+EAKK A+  A +I+++ DIKHISE+  L+G+ +E++ E W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------RQLVPVEAHKENQLLVHHADENFDKELERMLT 284
           QR  FYEQT LD      +QL  VE         H  D+ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVE---------HDEDDGFD-ELDRLLS 278

[Close]

BLAST of MS011728 vs. TAIR 10
Match: AT3G53270.5 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 315.5 bits (807), Expect = 4.5e-86
Identity = 163/290 (56.21%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60
           MNLSPF+ DIDELI E+ E   T+FADMK+VW  RKF++I+EA+P SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120
           IGHMV   S SRRLGG YCLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVAKKMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180
           +AVAKKML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240
           +G EV LN L KMS +Y+EAKK A+  A +I+++ DIKHISE+  L+G+ +E++ E W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------RQLVPVEAHKENQLLVHHADENFDKELERMLT 284
           QR  FYEQT LD      +QL  VE         H  D+ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVE---------HDEDDGFD-ELDRLLS 278

The following BLAST results are available for this feature:

BLAST of MS011728 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143014.1	5.9e-157	99.65	uncharacterized protein LOC111013003 [Momordica charantia]	[more]
XP_023536865.1	8.6e-132	84.56	uncharacterized protein LOC111798120 [Cucurbita pepo subsp. pepo] >XP_023536866....	[more]
XP_022965853.1	1.5e-131	84.21	uncharacterized protein LOC111465616 [Cucurbita maxima]	[more]
XP_022938175.1	1.9e-131	84.56	uncharacterized protein LOC111444339 [Cucurbita moschata]	[more]
KAG7021228.1	1.2e-130	83.86	hypothetical protein SDJN02_17916 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS011728 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011728 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN36	2.9e-157	99.65	uncharacterized protein LOC111013003 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1HQ65	7.1e-132	84.21	uncharacterized protein LOC111465616 OS=Cucurbita maxima OX=3661 GN=LOC111465616...	[more]
A0A6J1FIY6	9.3e-132	84.56	uncharacterized protein LOC111444339 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A5A7VCA1	1.6e-128	82.87	Putative mediator of RNA polymerase II transcription subunit 26 isoform X1 OS=Cu...	[more]
A0A0A0LL25	3.7e-128	82.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008040 PE=4 SV=1	[more]

BLAST of MS011728 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53270.1	4.5e-86	56.21	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.4	4.5e-86	56.21	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.3	4.5e-86	56.21	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.2	4.5e-86	56.21	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.5	4.5e-86	56.21	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PFAM	PF09808	SNAPc_SNAP43	coord: 6..200 e-value: 1.8E-49 score: 168.4
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PANTHER	PTHR15131	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	coord: 4..256
None	No IPR available	PANTHER	PTHR15131:SF3	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 1	coord: 4..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011728.1	MS011728.1	mRNA