MS011636 (gene) Bitter gourd (TR) v1

Overview


Name	MS011636
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MFS domain-containing protein
Location	scaffold239: 3408074 .. 3408554 (-)
RNA-Seq Expression	MS011636
Synteny	MS011636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACTGGCCTAATTGTCCTCTCTCAGATAAGCTCTGCCTCTGCCGTTCCTCTCGCTGCAATCCTGCTTTTGGGCTTGCCTGACGATCCATCCACCACACTTCTTCATGGGCTGGTCTTGTTCGTAATGGGTTTGAGCATCTCCTGGAATGCTTCAGCAACTAACAAGTATGTTTCTTCATACAAAAGGGGGGAAAAGCCATAATTTTCTTAATCTAATAGTAAGGCAAACTAAAGGAGAAATTGCTCCCTTTGCTTACTTATGATTGGTTGTCATTCCGGAGAAGTCTCGCACGAGCATCTATGCTTTGGATCGATCGTTTGAATCCATATTGGCATCGTTTGCTCCACCTGTAGTTGGGGTTTTGGCTCAGCATGTCTACGGTTACAGACCAATTAGAGAAGGATCATCGGACTCTGCCCAGATCAAAACAGACAGAGAGAATGCAAATTCACTGGCCAAGGCACTATACACAGCCATT

mRNA sequence

AATACTGGCCTAATTGTCCTCTCTCAGATAAGCTCTGCCTCTGCCGTTCCTCTCGCTGCAATCCTGCTTTTGGGCTTGCCTGACGATCCATCCACCACACTTCTTCATGGGCTGGTCTTGTTCGTAATGGGTTTGAGCATCTCCTGGAATGCTTCAGCAACTAACAAGTATAAGTCTCGCACGAGCATCTATGCTTTGGATCGATCGTTTGAATCCATATTGGCATCGTTTGCTCCACCTGTAGTTGGGGTTTTGGCTCAGCATGTCTACGGTTACAGACCAATTAGAGAAGGATCATCGGACTCTGCCCAGATCAAAACAGACAGAGAGAATGCAAATTCACTGGCCAAGGCACTATACACAGCCATT

Coding sequence (CDS)

AATACTGGCCTAATTGTCCTCTCTCAGATAAGCTCTGCCTCTGCCGTTCCTCTCGCTGCAATCCTGCTTTTGGGCTTGCCTGACGATCCATCCACCACACTTCTTCATGGGCTGGTCTTGTTCGTAATGGGTTTGAGCATCTCCTGGAATGCTTCAGCAACTAACAAGTATAAGTCTCGCACGAGCATCTATGCTTTGGATCGATCGTTTGAATCCATATTGGCATCGTTTGCTCCACCTGTAGTTGGGGTTTTGGCTCAGCATGTCTACGGTTACAGACCAATTAGAGAAGGATCATCGGACTCTGCCCAGATCAAAACAGACAGAGAGAATGCAAATTCACTGGCCAAGGCACTATACACAGCCATT

Protein sequence

NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNKYKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENANSLAKALYTAI

Homology

[Close]

BLAST of MS011636 vs. NCBI nr
Match: KAB1210267.1 (hypothetical protein CJ030_MR6G013338 [Morella rubra])

HSP 1 Score: 191.4 bits (485), Expect = 4.5e-45
Identity = 99/131 (75.57%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+LSQISSASA+PLAAILLLGLPDDPST  LHGLVLF+MGLSISWNA ATN     
Sbjct: 289 NSGRIILSQISSASAIPLAAILLLGLPDDPSTAFLHGLVLFLMGLSISWNAPATNNPIFA 348

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTSIYALDRSFES+L+SFAPPVVG++AQH+YGY+P+ +GSS+S +I+TDRENA
Sbjct: 349 EIVPEKSRTSIYALDRSFESVLSSFAPPVVGIMAQHIYGYKPVPKGSSNSVEIETDRENA 408

Query: 121 NSLAKALYTAI 124
            SLAKALYTAI
Sbjct: 409 RSLAKALYTAI 419

[Close]

BLAST of MS011636 vs. NCBI nr
Match: GAU19094.1 (hypothetical protein TSUD_79160 [Trifolium subterraneum])

HSP 1 Score: 191.0 bits (484), Expect = 5.9e-45
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNKY--- 60
           N+G I+LSQISS SAVPLAAILLLGLPDDPST  +HGLVLF+MGL ISWN +ATN +   
Sbjct: 292 NSGRIMLSQISSGSAVPLAAILLLGLPDDPSTAFMHGLVLFIMGLCISWNGAATNNFYSP 351

Query: 61  --------KSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDR 120
                   KSRT+IYALDRSFESILASFAPPVVGVLAQHVYGY+PI +GSSDS +I+TDR
Sbjct: 352 IFAEIVPEKSRTAIYALDRSFESILASFAPPVVGVLAQHVYGYKPIPKGSSDSVEIETDR 411

Query: 121 ENANSLAKALYTAI 124
           ENA SLAKALYTAI
Sbjct: 412 ENAASLAKALYTAI 425

[Close]

BLAST of MS011636 vs. NCBI nr
Match: KAB1210260.1 (hypothetical protein CJ030_MR6G013345 [Morella rubra] >KAB1210266.1 hypothetical protein CJ030_MR6G013339 [Morella rubra])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 99/135 (73.33%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+LSQISSASA+PLAAILLLGLPDDPST  LHGLVLF+MGLSISWNA ATN     
Sbjct: 289 NSGRIILSQISSASAIPLAAILLLGLPDDPSTAFLHGLVLFLMGLSISWNAPATNNGANS 348

Query: 61  --------YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTD 120
                    KSRTSIYALDRSFES+L+SFAPPVVG++AQH+YGY+P+ +GSS+S +I+TD
Sbjct: 349 PIFAEIVPEKSRTSIYALDRSFESVLSSFAPPVVGIMAQHIYGYKPVPKGSSNSVEIETD 408

Query: 121 RENANSLAKALYTAI 124
           RENA SLAKALYTAI
Sbjct: 409 RENARSLAKALYTAI 423

[Close]

BLAST of MS011636 vs. NCBI nr
Match: XP_022132543.1 (uncharacterized protein LOC111005375 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-44
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G IVLSQISS SA+PLAAILLL LPDDPST  LHGLVLF+MGLSISWN  ATN     
Sbjct: 291 NSGRIVLSQISSGSAIPLAAILLLVLPDDPSTAFLHGLVLFIMGLSISWNGPATNNPIFA 350

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTSIYALDRSFES+L+SFAPPVVGVLAQHVYGY+P+  GSSDS QI+TDRENA
Sbjct: 351 EIVPEKSRTSIYALDRSFESVLSSFAPPVVGVLAQHVYGYKPVVRGSSDSVQIETDRENA 410

Query: 121 NSLAKALYTAI 124
            SLA+ALYTAI
Sbjct: 411 KSLARALYTAI 421

[Close]

BLAST of MS011636 vs. NCBI nr
Match: KAF8019057.1 (hypothetical protein BT93_H3819 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 99/131 (75.57%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+LSQISS SA+PLAA+LLL LPDDP+T  LHGLVLF+MGL ISWNA ATN     
Sbjct: 268 NSGRIILSQISSGSAIPLAAVLLLALPDDPTTAFLHGLVLFIMGLIISWNAPATNNPIFA 327

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTSIYALDRSFES+LASFAPPVVG+LAQHVYGY+PI +GSSDS +I+TDRENA
Sbjct: 328 EIVPEKSRTSIYALDRSFESVLASFAPPVVGILAQHVYGYKPIPKGSSDSVEIETDRENA 387

Query: 121 NSLAKALYTAI 124
            SLAKALYTAI
Sbjct: 388 ASLAKALYTAI 398

[Close]

BLAST of MS011636 vs. ExPASy TrEMBL
Match: A0A6A1VEL8 (MFS domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013338 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.2e-45
Identity = 99/131 (75.57%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+LSQISSASA+PLAAILLLGLPDDPST  LHGLVLF+MGLSISWNA ATN     
Sbjct: 289 NSGRIILSQISSASAIPLAAILLLGLPDDPSTAFLHGLVLFLMGLSISWNAPATNNPIFA 348

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTSIYALDRSFES+L+SFAPPVVG++AQH+YGY+P+ +GSS+S +I+TDRENA
Sbjct: 349 EIVPEKSRTSIYALDRSFESVLSSFAPPVVGIMAQHIYGYKPVPKGSSNSVEIETDRENA 408

Query: 121 NSLAKALYTAI 124
            SLAKALYTAI
Sbjct: 409 RSLAKALYTAI 419

[Close]

BLAST of MS011636 vs. ExPASy TrEMBL
Match: A0A2Z6LMW4 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_79160 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.9e-45
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNKY--- 60
           N+G I+LSQISS SAVPLAAILLLGLPDDPST  +HGLVLF+MGL ISWN +ATN +   
Sbjct: 292 NSGRIMLSQISSGSAVPLAAILLLGLPDDPSTAFMHGLVLFIMGLCISWNGAATNNFYSP 351

Query: 61  --------KSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDR 120
                   KSRT+IYALDRSFESILASFAPPVVGVLAQHVYGY+PI +GSSDS +I+TDR
Sbjct: 352 IFAEIVPEKSRTAIYALDRSFESILASFAPPVVGVLAQHVYGYKPIPKGSSDSVEIETDR 411

Query: 121 ENANSLAKALYTAI 124
           ENA SLAKALYTAI
Sbjct: 412 ENAASLAKALYTAI 425

[Close]

BLAST of MS011636 vs. ExPASy TrEMBL
Match: A0A6A1VDL6 (MFS domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013339 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.4e-45
Identity = 99/135 (73.33%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+LSQISSASA+PLAAILLLGLPDDPST  LHGLVLF+MGLSISWNA ATN     
Sbjct: 289 NSGRIILSQISSASAIPLAAILLLGLPDDPSTAFLHGLVLFLMGLSISWNAPATNNGANS 348

Query: 61  --------YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTD 120
                    KSRTSIYALDRSFES+L+SFAPPVVG++AQH+YGY+P+ +GSS+S +I+TD
Sbjct: 349 PIFAEIVPEKSRTSIYALDRSFESVLSSFAPPVVGIMAQHIYGYKPVPKGSSNSVEIETD 408

Query: 121 RENANSLAKALYTAI 124
           RENA SLAKALYTAI
Sbjct: 409 RENARSLAKALYTAI 423

[Close]

BLAST of MS011636 vs. ExPASy TrEMBL
Match: A0A6J1BWJ4 (uncharacterized protein LOC111005375 OS=Momordica charantia OX=3673 GN=LOC111005375 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G IVLSQISS SA+PLAAILLL LPDDPST  LHGLVLF+MGLSISWN  ATN     
Sbjct: 291 NSGRIVLSQISSGSAIPLAAILLLVLPDDPSTAFLHGLVLFIMGLSISWNGPATNNPIFA 350

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTSIYALDRSFES+L+SFAPPVVGVLAQHVYGY+P+  GSSDS QI+TDRENA
Sbjct: 351 EIVPEKSRTSIYALDRSFESVLSSFAPPVVGVLAQHVYGYKPVVRGSSDSVQIETDRENA 410

Query: 121 NSLAKALYTAI 124
            SLA+ALYTAI
Sbjct: 411 KSLARALYTAI 421

[Close]

BLAST of MS011636 vs. ExPASy TrEMBL
Match: A0A2K3NWF6 (Protein spinster-like OS=Trifolium pratense OX=57577 GN=L195_g003860 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-44
Identity = 103/149 (69.13%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNKY--- 60
           N+G I+LSQISS SAVPLAAILLLGLPDDPST ++HGLVLF+MGL ISWN +ATNKY   
Sbjct: 292 NSGRIMLSQISSGSAVPLAAILLLGLPDDPSTAVMHGLVLFIMGLCISWNGAATNKYTIA 351

Query: 61  -----------------------KSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRP 120
                                  KSRT+IYALDRSFESILASFAPPVVG+LAQHVYGY+P
Sbjct: 352 NSILQEWYNAILDSPIFAEIVPEKSRTAIYALDRSFESILASFAPPVVGLLAQHVYGYKP 411

Query: 121 IREGSSDSAQIKTDRENANSLAKALYTAI 124
           I +GSSDS +I+TDRENA SLAKALYTAI
Sbjct: 412 IPKGSSDSVEIETDRENAASLAKALYTAI 440

[Close]

BLAST of MS011636 vs. TAIR 10
Match: AT1G78130.1 (Major facilitator superfamily protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-44
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G I+L+QISSASA+PLAAILLL LPDDPST  +HGL+L ++GL +SWNA ATN     
Sbjct: 293 NSGRIILAQISSASAIPLAAILLLVLPDDPSTAAIHGLILVLLGLFVSWNAPATNNPIFA 352

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                KSRTS+YALD+SFESIL+SFAPP+VG+LAQHVYGY+PI EGSS S +I TDRENA
Sbjct: 353 EIVPEKSRTSVYALDKSFESILSSFAPPIVGILAQHVYGYKPIPEGSSRSTEIATDRENA 412

Query: 121 NSLAKALYTAI 124
            SLAKALYT+I
Sbjct: 413 ASLAKALYTSI 423

[Close]

BLAST of MS011636 vs. TAIR 10
Match: AT5G10190.1 (Major facilitator superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATN----- 60
           N G I LSQ+SS SA+PLAAILL+GLPDDPST   HGLVL +MGL ISWN +ATN     
Sbjct: 290 NGGRIFLSQVSSGSAIPLAAILLIGLPDDPSTAFSHGLVLVIMGLCISWNGAATNGPIFA 349

Query: 61  ---KYKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGYRPIREGSSDSAQIKTDRENA 120
                ++RTSIYALDRSFESILASFAPP+VG+LAQ++YGY+PI EGS+ S +I TDR NA
Sbjct: 350 EIVPERARTSIYALDRSFESILASFAPPIVGMLAQNIYGYKPIPEGSTSSVKIDTDRANA 409

Query: 121 NSLAKALYTAI 124
            SLAKALYT+I
Sbjct: 410 ASLAKALYTSI 420

[Close]

BLAST of MS011636 vs. TAIR 10
Match: AT4G36790.1 (Major facilitator superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATN----- 60
           N+G ++ +Q S+   +P + ILL  +P   S+  +  + LF+MGL+I+W  SA N     
Sbjct: 327 NSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNAPMFA 386

Query: 61  ---KYKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGY 93
                + RT IYA DR+FE   +SFA P+VG+L++ ++GY
Sbjct: 387 EVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGY 426

[Close]

BLAST of MS011636 vs. TAIR 10
Match: AT2G18590.1 (Major facilitator superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-08
Identity = 30/100 (30.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 1   NTGLIVLSQISSASAVPLAAILLLGLPDDPSTTLLHGLVLFVMGLSISWNASATNK---- 60
           N+G ++ +Q S       + +LL  +P   ++  +  + LF+MGL+I+W   A N     
Sbjct: 312 NSGRLICAQFSVFMGAMFSIVLLRMIPQSVNSFYIFLVTLFLMGLTITWCGPAINSPILA 371

Query: 61  ----YKSRTSIYALDRSFESILASFAPPVVGVLAQHVYGY 93
                K RT +YA DR+ E   +SF  P+VG++++ ++G+
Sbjct: 372 EIVPAKHRTMVYAFDRALEVTFSSFGAPLVGIMSEKLFGF 411

The following BLAST results are available for this feature:

BLAST of MS011636 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1210267.1	4.5e-45	75.57	hypothetical protein CJ030_MR6G013338 [Morella rubra]	[more]
GAU19094.1	5.9e-45	76.12	hypothetical protein TSUD_79160 [Trifolium subterraneum]	[more]
KAB1210260.1	1.3e-44	73.33	hypothetical protein CJ030_MR6G013345 [Morella rubra] >KAB1210266.1 hypothetical...	[more]
XP_022132543.1	2.9e-44	77.10	uncharacterized protein LOC111005375 [Momordica charantia]	[more]
KAF8019057.1	3.8e-44	75.57	hypothetical protein BT93_H3819 [Corymbia citriodora subsp. variegata]	[more]

BLAST of MS011636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1VEL8	2.2e-45	75.57	MFS domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013338 PE=...	[more]
A0A2Z6LMW4	2.9e-45	76.12	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_79160 PE=4 SV=...	[more]
A0A6A1VDL6	6.4e-45	73.33	MFS domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR6G013339 PE=...	[more]
A0A6J1BWJ4	1.4e-44	77.10	uncharacterized protein LOC111005375 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A2K3NWF6	2.4e-44	69.13	Protein spinster-like OS=Trifolium pratense OX=57577 GN=L195_g003860 PE=4 SV=1	[more]

BLAST of MS011636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78130.1	1.4e-44	70.23	Major facilitator superfamily protein	[more]
AT5G10190.1	1.3e-42	68.70	Major facilitator superfamily protein	[more]
AT4G36790.1	2.2e-13	38.00	Major facilitator superfamily protein	[more]
AT2G18590.1	1.6e-08	30.00	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23505:SF58	PROTEIN SPINSTER-LIKE	coord: 1..122
None	No IPR available	PANTHER	PTHR23505	SPINSTER	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011636.1	MS011636.1	mRNA