MS011584 (gene) Bitter gourd (TR) v1

Overview


Name	MS011584
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SKIP34
Location	scaffold239: 3037828 .. 3038103 (-)
RNA-Seq Expression	MS011584
Synteny	MS011584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACCCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA

mRNA sequence

ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACCCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA

Coding sequence (CDS)

ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACCCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA

Protein sequence

MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

Homology

[Close]

BLAST of MS011584 vs. NCBI nr
Match: XP_022133249.1 (protein SKIP34 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 6.6e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
          MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL
Sbjct: 1  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60

Query: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Sbjct: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 92

[Close]

BLAST of MS011584 vs. NCBI nr
Match: XP_022978829.1 (protein SKIP34 [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of MS011584 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MS011584 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH RSLFRG+++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSRLLEE
Sbjct: 1  MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLV VMEILENYLKR+YRDRQEY VRLL+P+S K
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96

[Close]

BLAST of MS011584 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.6e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MS011584 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMK 60
          MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MK
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEHMK 60

Query: 61 RLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          R VSVMEI+E +L+R+++++++   RL SP+S K
Sbjct: 61 RFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]

BLAST of MS011584 vs. ExPASy TrEMBL
Match: A0A6J1BVG6 (protein SKIP34 OS=Momordica charantia OX=3673 GN=LOC111005890 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
          MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL
Sbjct: 1  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60

Query: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Sbjct: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 92

[Close]

BLAST of MS011584 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of MS011584 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MS011584 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MS011584 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
          MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MS011584 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMK 60
          MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MK
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEHMK 60

Query: 61 RLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
          R VSVMEI+E +L+R+++++++   RL SP+S K
Sbjct: 61 RFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

The following BLAST results are available for this feature:

BLAST of MS011584 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133249.1	6.6e-41	100.00	protein SKIP34 [Momordica charantia]	[more]
XP_022978829.1	5.6e-32	81.25	protein SKIP34 [Cucurbita maxima]	[more]
XP_011657944.1	5.6e-32	83.33	protein SKIP34 [Cucumis sativus]	[more]
XP_023544310.1	2.1e-31	80.21	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]
XP_008440533.1	3.6e-31	82.29	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]

BLAST of MS011584 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	1.7e-15	52.13	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of MS011584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVG6	3.2e-41	100.00	protein SKIP34 OS=Momordica charantia OX=3673 GN=LOC111005890 PE=4 SV=1	[more]
A0A6J1IV54	2.7e-32	81.25	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]
A0A0A0KIR5	2.7e-32	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A5D3CN14	1.8e-31	82.29	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	1.8e-31	82.29	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]

BLAST of MS011584 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	1.2e-16	52.13	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011584.1	MS011584.1	mRNA