MS011561 (gene) Bitter gourd (TR) v1

Overview


Name	MS011561
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Hydroxyproline-rich glycoprotein family protein
Location	scaffold239: 2906716 .. 2907186 (+)
RNA-Seq Expression	MS011561
Synteny	MS011561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCCCCGATTTCTCGCCGCCCCACGCCGACGCATCCAGACCCTCCTTAGGCTTCCCCCTCGGCACTGCTCTGCTCCTCCTCGTAATCTTCACCCTCAGCGGAATCTTCTCCTGCTGCTACCACTGGGACAAACTCAGATCCCTCCGCCGATCCGCCTCCCAACATCCCCACCTTCACCTCCCATCATCTCCCTCCAAATCTAACCCTAATTCCCTGGTAATTTTCTATTTTTACTCCCATCTTTCTCTAATTTCTGCTTAATCCAGCCTCGATTATTAAAAACCATCGACGAATTGACAGGATTTGGAGACAAATCAAAGGGATAGCCTATCGGTGCTGATGCCTGGAGACTCGATCCCCAAGTTCATAGCGATGCCCTGCCCTCGGGAGCCGCCGCGGCCGGAGATGATCCAGGTCAAAGTCGAGAAGCCGCCGAAGCCTCCGCGCATAGCGGTTCCTTTCTAT

mRNA sequence

ATGGAGAGCCCCGATTTCTCGCCGCCCCACGCCGACGCATCCAGACCCTCCTTAGGCTTCCCCCTCGGCACTGCTCTGCTCCTCCTCGTAATCTTCACCCTCAGCGGAATCTTCTCCTGCTGCTACCACTGGGACAAACTCAGATCCCTCCGCCGATCCGCCTCCCAACATCCCCACCTTCACCTCCCATCATCTCCCTCCAAATCTAACCCTAATTCCCTGGATTTGGAGACAAATCAAAGGGATAGCCTATCGGTGCTGATGCCTGGAGACTCGATCCCCAAGTTCATAGCGATGCCCTGCCCTCGGGAGCCGCCGCGGCCGGAGATGATCCAGGTCAAAGTCGAGAAGCCGCCGAAGCCTCCGCGCATAGCGGTTCCTTTCTAT

Coding sequence (CDS)

ATGGAGAGCCCCGATTTCTCGCCGCCCCACGCCGACGCATCCAGACCCTCCTTAGGCTTCCCCCTCGGCACTGCTCTGCTCCTCCTCGTAATCTTCACCCTCAGCGGAATCTTCTCCTGCTGCTACCACTGGGACAAACTCAGATCCCTCCGCCGATCCGCCTCCCAACATCCCCACCTTCACCTCCCATCATCTCCCTCCAAATCTAACCCTAATTCCCTGGATTTGGAGACAAATCAAAGGGATAGCCTATCGGTGCTGATGCCTGGAGACTCGATCCCCAAGTTCATAGCGATGCCCTGCCCTCGGGAGCCGCCGCGGCCGGAGATGATCCAGGTCAAAGTCGAGAAGCCGCCGAAGCCTCCGCGCATAGCGGTTCCTTTCTAT

Protein sequence

MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPKPPRIAVPFY

Homology

[Close]

BLAST of MS011561 vs. NCBI nr
Match: XP_022133072.1 (uncharacterized protein At5g65660 [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60
           MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60

Query: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120
           HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK
Sbjct: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120

Query: 121 PPRIAVPFY 130
           PPRIAVPFY
Sbjct: 121 PPRIAVPFY 129

[Close]

BLAST of MS011561 vs. NCBI nr
Match: XP_023518276.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-58
Identity = 117/132 (88.64%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
            H  LPSSPSKSNP +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMIQVKVEK
Sbjct: 120 DHHLLPSSPSKSNPTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 179

Query: 121 PPKPPRIAVPFY 130
           PPKPPRIA+PFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of MS011561 vs. NCBI nr
Match: XP_022962719.1 (uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypothetical protein SDJN03_11476, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026886.1 hypothetical protein SDJN02_10893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 9.2e-57
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

Query: 121 PPKPPRIAVPFY 130
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAIPFY 132

[Close]

BLAST of MS011561 vs. NCBI nr
Match: XP_038881262.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 119/132 (90.15%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPH- 60
           MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ  H 
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD 60

Query: 61  --LHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
             LHL SSPSKSNP S DLE NQR+SLSVLMPGDSIPKFIAMPCPREPPR EMI+VKVEK
Sbjct: 61  DDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSIPKFIAMPCPREPPRAEMIEVKVEK 120

Query: 121 PPKPPRIAVPFY 130
           PPKP RIAVPFY
Sbjct: 121 PPKPLRIAVPFY 132

[Close]

BLAST of MS011561 vs. NCBI nr
Match: XP_023003846.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-56
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMIQV VEK
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

Query: 121 PPKPPRIAVPFY 130
           PPKPPRIA+PFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of MS011561 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-36
Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 5   DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRS-ASQHPHLHLP 64
           DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RSLRRS A+  P   + 
Sbjct: 6   DFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIE 65

Query: 65  SSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPP---- 124
           S+P K  P   +++  Q  S+ VLMPGD+ PKFIA+PCP  PPRPE + V V+ PP    
Sbjct: 66  SNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPP 125

Query: 125 -KPPRIAVPFY 130
            KP R  VP Y
Sbjct: 126 VKPARFPVPLY 136

[Close]

BLAST of MS011561 vs. ExPASy TrEMBL
Match: A0A6J1BVL2 (uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.1e-67
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60
           MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60

Query: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120
           HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK
Sbjct: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120

Query: 121 PPRIAVPFY 130
           PPRIAVPFY
Sbjct: 121 PPRIAVPFY 129

[Close]

BLAST of MS011561 vs. ExPASy TrEMBL
Match: A0A6J1HHX0 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111463125 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.5e-57
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

Query: 121 PPKPPRIAVPFY 130
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAIPFY 132

[Close]

BLAST of MS011561 vs. ExPASy TrEMBL
Match: A0A6J1KQE2 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111497312 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.9e-57
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMIQV VEK
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

Query: 121 PPKPPRIAVPFY 130
           PPKPPRIA+PFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of MS011561 vs. ExPASy TrEMBL
Match: A0A6J1GCM8 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111452993 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.1e-55
Identity = 113/128 (88.28%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60
           MESPDFSPPHADASRPSL FPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ    
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFN-- 60

Query: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120
             P+SPSK  P SLDLE NQRDSLSV+MPGDSIPKFIAMPCPREPPRPEM++VKVEKPPK
Sbjct: 61  --PTSPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPPK 120

Query: 121 PPRIAVPF 129
           PPRIAVPF
Sbjct: 121 PPRIAVPF 124

[Close]

BLAST of MS011561 vs. ExPASy TrEMBL
Match: A0A6J1IPP8 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111478811 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 114/131 (87.02%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60
           MESPDFSPPHADASRPSL FPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ    
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFN-- 60

Query: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPPK 120
             P+SPSK  P SLDLE NQRDSLSV+MPGDSIPKFIAMPCPREPPRPEM++VKVEKPPK
Sbjct: 61  --PTSPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPPK 120

Query: 121 --PPRIAVPFY 130
             PPRIAVPFY
Sbjct: 121 PPPPRIAVPFY 127

[Close]

BLAST of MS011561 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 5   DFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRS-ASQHPHLHLP 64
           DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RSLRRS A+  P   + 
Sbjct: 6   DFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIE 65

Query: 65  SSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPP---- 124
           S+P K  P   +++  Q  S+ VLMPGD+ PKFIA+PCP  PPRPE + V V+ PP    
Sbjct: 66  SNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPP 125

Query: 125 -KPPRIAVPFY 130
            KP R  VP Y
Sbjct: 126 VKPARFPVPLY 136

The following BLAST results are available for this feature:

BLAST of MS011561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133072.1	1.7e-66	100.00	uncharacterized protein At5g65660 [Momordica charantia]	[more]
XP_023518276.1	2.9e-58	88.64	uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962719.1	9.2e-57	87.12	uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypoth...	[more]
XP_038881262.1	1.6e-56	90.15	uncharacterized protein At5g65660-like [Benincasa hispida]	[more]
XP_023003846.1	2.1e-56	87.12	uncharacterized protein At5g65660-like [Cucurbita maxima]	[more]

BLAST of MS011561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	1.9e-36	61.83	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of MS011561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVL2	8.1e-67	100.00	uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755...	[more]
A0A6J1HHX0	4.5e-57	87.12	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KQE2	9.9e-57	87.12	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114973...	[more]
A0A6J1GCM8	7.1e-55	88.28	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1IPP8	3.5e-54	87.02	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114788...	[more]

BLAST of MS011561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	1.3e-37	61.83	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..83
None	No IPR available	PANTHER	PTHR34291:SF11	SUBFAMILY NOT NAMED	coord: 1..129
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011561.1	MS011561.1	mRNA