MS011558 (gene) Bitter gourd (TR) v1

Overview


Name	MS011558
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein RMD5 homolog
Location	scaffold239: 2877750 .. 2878916 (+)
RNA-Seq Expression	MS011558
Synteny	MS011558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAGATAGCATTAAAGATGCATTTGACCGCGTAACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAATTGACCAGATCCATCTTGAATTGGAGCAGGTGCTACAAAAAGTACAGTTAGCTGCTGATAATCCTGAATGTCCTATTGATTTGAATTCAGTTTTTTCTGAACTCAAAACGAAGTTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACACAGAAGGAGTTGAATGTTGCTCTGAGCAAGTATCCTAAGCTTATTGAGAAGTCCTTCAATCCAGATATATCAAAAGCTTACAGAAACGTTGATTTTGATAGGCATACCGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAGGGTATGTTTGAACTTGGTGATTGCTTTATTAACGAGGCTGGCGAGTCAGAATCTGCTGCCTCGATGAGATCACCATTTCAGGAAATGTATCAGATCCTTGAAGCGATGAAGTCCCGGAATCTAGAGCCAGCTTTGAACTGGGCTTTGAATAACTCAAGTAAACTTAAGGAATGTGGATCGGATCTCTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGATGCTTTGAAGTATGCTAGGACGTACCTGGCTCCTCTTGCGTCCAACCACATGGCTGAACTTCAGAAACTTATGGCTTGCCTCTTGTGGACTGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTGTCAGCAACAAATTGGGAAAAAGTTGCCGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTATGAGAGTCCCTTGGGCGTAACAGTCGCAGCAGGGGTCCAGGGATTGCCTCCCCTCTTGAAGTTTATGAATGTGATGGCTGGGAAGAAACAGGAATGGCAGTCTATGAAGCAATTGCCTGTGCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCAAAGGAACAGTCTACCGAAGAAAACCCACCTATGTTGATGCTGTGTGGCCATGTCCTCTGCAAGCAGTCCATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCATATTGTCCAACAGACATTGATGCTACACGGTGTAGGCAATTGTACTTT

mRNA sequence

ATGGAGTTAGATAGCATTAAAGATGCATTTGACCGCGTAACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAATTGACCAGATCCATCTTGAATTGGAGCAGGTGCTACAAAAAGTACAGTTAGCTGCTGATAATCCTGAATGTCCTATTGATTTGAATTCAGTTTTTTCTGAACTCAAAACGAAGTTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACACAGAAGGAGTTGAATGTTGCTCTGAGCAAGTATCCTAAGCTTATTGAGAAGTCCTTCAATCCAGATATATCAAAAGCTTACAGAAACGTTGATTTTGATAGGCATACCGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAGGGTATGTTTGAACTTGGTGATTGCTTTATTAACGAGGCTGGCGAGTCAGAATCTGCTGCCTCGATGAGATCACCATTTCAGGAAATGTATCAGATCCTTGAAGCGATGAAGTCCCGGAATCTAGAGCCAGCTTTGAACTGGGCTTTGAATAACTCAAGTAAACTTAAGGAATGTGGATCGGATCTCTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGATGCTTTGAAGTATGCTAGGACGTACCTGGCTCCTCTTGCGTCCAACCACATGGCTGAACTTCAGAAACTTATGGCTTGCCTCTTGTGGACTGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTGTCAGCAACAAATTGGGAAAAAGTTGCCGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTATGAGAGTCCCTTGGGCGTAACAGTCGCAGCAGGGGTCCAGGGATTGCCTCCCCTCTTGAAGTTTATGAATGTGATGGCTGGGAAGAAACAGGAATGGCAGTCTATGAAGCAATTGCCTGTGCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCAAAGGAACAGTCTACCGAAGAAAACCCACCTATGTTGATGCTGTGTGGCCATGTCCTCTGCAAGCAGTCCATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCATATTGTCCAACAGACATTGATGCTACACGGTGTAGGCAATTGTACTTT

Coding sequence (CDS)

ATGGAGTTAGATAGCATTAAAGATGCATTTGACCGCGTAACGAAGAAGCAGAAATTATCTTCTTCCAAAAGTCAAGAAGTAATTGACCAGATCCATCTTGAATTGGAGCAGGTGCTACAAAAAGTACAGTTAGCTGCTGATAATCCTGAATGTCCTATTGATTTGAATTCAGTTTTTTCTGAACTCAAAACGAAGTTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACACAGAAGGAGTTGAATGTTGCTCTGAGCAAGTATCCTAAGCTTATTGAGAAGTCCTTCAATCCAGATATATCAAAAGCTTACAGAAACGTTGATTTTGATAGGCATACCGTTAACCAGATTATTGCTAGTCATTTCTATCGCCAGGGTATGTTTGAACTTGGTGATTGCTTTATTAACGAGGCTGGCGAGTCAGAATCTGCTGCCTCGATGAGATCACCATTTCAGGAAATGTATCAGATCCTTGAAGCGATGAAGTCCCGGAATCTAGAGCCAGCTTTGAACTGGGCTTTGAATAACTCAAGTAAACTTAAGGAATGTGGATCGGATCTCTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGAGATAGACATGATGCTTTGAAGTATGCTAGGACGTACCTGGCTCCTCTTGCGTCCAACCACATGGCTGAACTTCAGAAACTTATGGCTTGCCTCTTGTGGACTGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTGTCAGCAACAAATTGGGAAAAAGTTGCCGAGGAGCTTATAAGACAGTTTTGCAATTTTCTTGGTCAGTCCTATGAGAGTCCCTTGGGCGTAACAGTCGCAGCAGGGGTCCAGGGATTGCCTCCCCTCTTGAAGTTTATGAATGTGATGGCTGGGAAGAAACAGGAATGGCAGTCTATGAAGCAATTGCCTGTGCCCGTGGAGTTGGACAGAGAATTTCAGTTCCATTCCATCTTTGTTTGTCCGGTGTCAAAGGAACAGTCTACCGAAGAAAACCCACCTATGTTGATGCTGTGTGGCCATGTCCTCTGCAAGCAGTCCATCATGAAGATGTCTAAAAACAGCACAAAATCGTTTAAGTGCCCATATTGTCCAACAGACATTGATGCTACACGGTGTAGGCAATTGTACTTT

Protein sequence

MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFSELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIASHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRLDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRQLYF

Homology

[Close]

BLAST of MS011558 vs. NCBI nr
Match: XP_022132999.1 (protein RMD5 homolog A-like [Momordica charantia] >XP_022133000.1 protein RMD5 homolog A-like [Momordica charantia])

HSP 1 Score: 769.2 bits (1985), Expect = 1.7e-218
Identity = 387/389 (99.49%), Postives = 387/389 (99.49%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKD FDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQL ADNPECPIDLNSVFS
Sbjct: 1   MELDSIKDVFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQL-ADNPECPIDLNSVFS 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK
Sbjct: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. NCBI nr
Match: XP_008440495.1 (PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: protein RMD5 homolog A [Cucumis melo] >KAA0036368.1 protein RMD5-like protein A [Cucumis melo var. makuwa] >TYK12763.1 protein RMD5-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 751.1 bits (1938), Expect = 4.7e-213
Identity = 372/389 (95.63%), Postives = 384/389 (98.71%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV+D+IHLELEQVLQK+QL ADNPECPIDLNSVF+
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQL-ADNPECPIDLNSVFA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQL+STQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAAS+RSPFQEMYQILE+MKSRNLEPALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. NCBI nr
Match: XP_022963019.1 (protein RMD5 homolog [Cucurbita moschata] >XP_022963020.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963021.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963022.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963023.1 protein RMD5 homolog [Cucurbita moschata] >XP_023517860.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >XP_023517861.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >XP_023517862.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >KAG7026890.1 Protein RMD5-like A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 748.8 bits (1932), Expect = 2.3e-212
Identity = 372/389 (95.63%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKS EV+DQIHLELEQVLQK+QL ADNPECP+DL SVFS
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQL-ADNPECPVDLKSVFS 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAASMRSPFQEMYQILEAMKSRNL+PALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           L ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGR
Sbjct: 181 LNECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYSQSQLLS TNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSQSQLLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. NCBI nr
Match: XP_004143429.1 (protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cucumis sativus] >KAE8647535.1 hypothetical protein Csa_003397 [Cucumis sativus])

HSP 1 Score: 748.4 bits (1931), Expect = 3.0e-212
Identity = 370/389 (95.12%), Postives = 383/389 (98.46%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV+DQ+HLELEQVLQK+QL ADNPECPID+NSVF+
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQMHLELEQVLQKIQL-ADNPECPIDMNSVFA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
            LKTKLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ALKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAAS+RSPFQEMYQILE+MKSRNLEPALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LK+CGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKDCGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. NCBI nr
Match: XP_038883497.1 (protein RMD5 homolog [Benincasa hispida] >XP_038883498.1 protein RMD5 homolog [Benincasa hispida] >XP_038883499.1 protein RMD5 homolog [Benincasa hispida])

HSP 1 Score: 745.0 bits (1922), Expect = 3.4e-211
Identity = 371/389 (95.37%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV D+IHLELEQVLQK+QL ADNPECPIDL+SV +
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVADKIHLELEQVLQKIQL-ADNPECPIDLSSVAA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELK KLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKAKLKDIAPLTQLESTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAAS+RSPFQEMYQILEAMKSRNLEPALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILEAMKSRNLEPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. ExPASy Swiss-Prot
Match: Q9T075 (Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 8.2e-128
Identity = 231/392 (58.93%), Postives = 296/392 (75.51%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MEL SIKDAFDRV  KQKLS SK+ E++  +  E+++ L  ++    +    +D  S+ +
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYR-NVDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL+ AL+KYPK++EK  NPDISKAYR NV+FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSS 180
           A+ FYRQGMF++GDCF+ E GESE   S R  F EMY+ILEAMK R+LEPALNWA++NS 
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ YAR ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
           +LD SPY  S+ LS   W    +EL RQ+CN LG+S ESPL +TV AG Q LP LLK+MN
Sbjct: 241 KLDKSPY--SEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMN 300

Query: 301 -VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
            VMA KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ+
Sbjct: 301 VVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQT 360

Query: 361 IMKMSKNSTK-SFKCPYCPTDIDATRCRQLYF 390
           I KMSKN +K SFKCPYCPTD+D +RCRQL+F
Sbjct: 361 INKMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388

[Close]

BLAST of MS011558 vs. ExPASy Swiss-Prot
Match: Q6GLP4 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-53
Identity = 122/358 (34.08%), Postives = 203/358 (56.70%), Query Frame = 0


Query: 42  VQLAADNPECPIDLNSVFSELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDI 101
           +Q A  + E    L+ V ++   ++KD   + +L S  K+++ ++S+  K I+K+F+ DI
Sbjct: 44  LQAAEQDGELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADI 103

Query: 102 SKAYRNVD-----FDRHTVNQIIASHFYRQGMFELGDCFINEAGESESAASMRSPFQEMY 161
           S     +D       +  +++++  HF+RQGM ++ +    EA  S   AS + PF E+ 
Sbjct: 104 SSV--GIDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLSID-ASQKEPFVELN 163

Query: 162 QILEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFMEILQKG--DRHDALKYAR 221
           +ILEA+K R L PAL WA++N   L    S L  KLH + F+ +L  G  ++ +AL+YA+
Sbjct: 164 RILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAK 223

Query: 222 TYLAPLASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLG 281
            +  P A NH  ++Q LM  L++  + ++ SPY    LL A  W  + +   R  C+ LG
Sbjct: 224 NF-QPFAENHQKDIQVLMGSLVYLRQGIENSPY--VHLLDANQWADICDIFTRDACSLLG 283

Query: 282 QSYESPLGVTVAAGVQGLPPLLKFMNVMAGKKQE--WQSMKQLPVPVELDREFQFHSIFV 341
            S ESPL V+ +AG   LP L+    V+  ++    W    +LP+ V+L ++  +HSIF 
Sbjct: 284 LSVESPLSVSFSAGCVALPALINIKAVIEQRQCSGVWNQKDELPIEVDLGKKCWYHSIFA 343

Query: 342 CPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           CP+ ++Q+TE NPPM ++CGH++ + ++ KM   S    KCPYCP +      +Q++F
Sbjct: 344 CPILRQQTTENNPPMKLVCGHIISRDALNKMFNGS--KLKCPYCPMEQSPGDAKQIFF 391

[Close]

BLAST of MS011558 vs. ExPASy Swiss-Prot
Match: Q640V2 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-52
Identity = 121/356 (33.99%), Postives = 203/356 (57.02%), Query Frame = 0


Query: 42  VQLAADNPECPIDLNSVFSELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDI 101
           +Q A  + E    L+ V ++   ++KD   + +L S  K+++ ++S+  K I+K+F+ DI
Sbjct: 44  LQAAEQDGELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADI 103

Query: 102 SKAYRN---VDFDRHTVNQIIASHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQI 161
           S    +    +  +  +++++  HF+RQGM ++ +    EAG S   AS + PF E+ +I
Sbjct: 104 SSVGIDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSID-ASQKEPFVELNRI 163

Query: 162 LEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFMEILQKG--DRHDALKYARTY 221
           LEA+K R L PAL WA++N   L    S L  KLH + F+ +L  G  ++ +AL+YA+ +
Sbjct: 164 LEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNF 223

Query: 222 LAPLASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQS 281
             P A NH  ++Q LM  L++  + ++ SPY    LL A  W  + +   R  C  LG S
Sbjct: 224 -QPFAENHQKDIQVLMGSLVYLRQGIENSPY--VHLLDANQWADICDIFTRDACALLGLS 283

Query: 282 YESPLGVTVAAGVQGLPPLLKFMNVMAGKK--QEWQSMKQLPVPVELDREFQFHSIFVCP 341
            ESPL V+ +AG   LP L+    V+  ++    W    +LP+ V+L ++  +HSIF CP
Sbjct: 284 VESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACP 343

Query: 342 VSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           + ++Q+T+ NPPM ++CGH++ + ++ KM   S    KCPYCP +      +Q++F
Sbjct: 344 ILRQQTTDNNPPMKLVCGHIISRDALNKMFNGS--KLKCPYCPMEQSPGDAKQIFF 391

[Close]

BLAST of MS011558 vs. ExPASy Swiss-Prot
Match: O59668 (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC29A3.03c PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-52
Identity = 127/401 (31.67%), Postives = 205/401 (51.12%), Query Frame = 0


Query: 40  QKVQLAADNPECPIDLNSVFSELK-----------TKLKDIAPLTQ--------LESTQK 99
           Q+++  A   +C   LN + S LK           T +K++   ++        L+ T+K
Sbjct: 7   QRIEETAPGNKCLAKLNELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDLKRTEK 66

Query: 100 ELNVALSKYPKLIEKSFNPDIS--KAYRNVDFDRHTVNQIIASHFYRQGMFELGDCFINE 159
           + + +L+++ K +EK FN D+   K + + +  +  ++  ++ HF+RQG  EL   F  E
Sbjct: 67  KFHTSLNRFGKTLEKKFNFDLEDIKLHSSFESKKREIDTALSLHFFRQGDVELAHLFCKE 126

Query: 160 AGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFM 219
           AG  E + S+   F  +  I++ ++ ++L+  + WA      L+  GS L   L   + +
Sbjct: 127 AGIEEPSESLH-VFTLLKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLV 186

Query: 220 -EILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRLDCSPYSQSQLLSATN- 279
              L   D   A++Y RT +A     H+A++QK M  L +         S++++LS TN 
Sbjct: 187 SNYLTTKDIMAAIRYCRTNMAEFQKKHLADIQKTMIALFFC--------SRNEVLSGTND 246

Query: 280 ----------------------------WEKVAEELIRQFCNFLGQSYESPLGVTVAAGV 339
                                       W+ +    +R+FC  LG S ESPL + V AG 
Sbjct: 247 SHDSIHHIISNNAQLNIPQEYIDVLDLDWKSLELLFVREFCAALGMSLESPLDIVVNAGA 306

Query: 340 QGLPPLLKFMNVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLM 390
             LP LLK  ++M  K  EW S  +LPV + L   + FHS+F CPVSKEQ+TEENPPM+M
Sbjct: 307 IALPILLKMSSIMKKKHTEWTSQGELPVEIFLPSSYHFHSVFTCPVSKEQATEENPPMMM 366

[Close]

BLAST of MS011558 vs. ExPASy Swiss-Prot
Match: Q9H871 (E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-51
Identity = 124/375 (33.07%), Postives = 208/375 (55.47%), Query Frame = 0


Query: 25  QEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFSELKTKLKDIAPLTQLESTQKELNV 84
           +E+ID       ++LQ       + E    L+ V ++   ++KD   + +L S  K+++ 
Sbjct: 30  EELIDYTGGLKHEILQS---HGQDAELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHS 89

Query: 85  ALSKYPKLIEKSFNPDISKAYRNVD-----FDRHTVNQIIASHFYRQGMFELGDCFINEA 144
           ++S+  K I+K+F+ DIS     +D       +  +N+++  HF+RQGM ++ +    E+
Sbjct: 90  SVSRVGKAIDKNFDSDISSV--GIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQES 149

Query: 145 GESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFME 204
           G S    S + PF E+ +ILEA+K R L PAL WA++N   L    S L  KLH + F+ 
Sbjct: 150 GLSVD-PSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFIS 209

Query: 205 ILQKG--DRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLSATN 264
           +L  G  ++ +AL+YA+ +  P A NH  ++Q LM  L++  + ++ SPY    LL A  
Sbjct: 210 LLMGGTTNQREALQYAKNF-QPFALNHQKDIQVLMGSLVYLRQGIENSPY--VHLLDANQ 269

Query: 265 WEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMAGKK--QEWQSMKQL 324
           W  + +   R  C  LG S ESPL V+ +AG   LP L+    V+  ++    W    +L
Sbjct: 270 WADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDEL 329

Query: 325 PVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPY 384
           P+ V+L ++  +HSIF CP+ ++Q+T+ NPPM ++CGH++ + ++ KM   S    KCPY
Sbjct: 330 PIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGS--KLKCPY 389

Query: 385 CPTDIDATRCRQLYF 390
           CP +      +Q++F
Sbjct: 390 CPMEQSPGDAKQIFF 391

[Close]

BLAST of MS011558 vs. ExPASy TrEMBL
Match: A0A6J1BU35 (protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 SV=1)

HSP 1 Score: 769.2 bits (1985), Expect = 8.0e-219
Identity = 387/389 (99.49%), Postives = 387/389 (99.49%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKD FDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQL ADNPECPIDLNSVFS
Sbjct: 1   MELDSIKDVFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQL-ADNPECPIDLNSVFS 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK
Sbjct: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. ExPASy TrEMBL
Match: A0A1S3B0U3 (protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1)

HSP 1 Score: 751.1 bits (1938), Expect = 2.3e-213
Identity = 372/389 (95.63%), Postives = 384/389 (98.71%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV+D+IHLELEQVLQK+QL ADNPECPIDLNSVF+
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQL-ADNPECPIDLNSVFA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQL+STQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAAS+RSPFQEMYQILE+MKSRNLEPALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. ExPASy TrEMBL
Match: A0A5D3CLJ0 (Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003520 PE=4 SV=1)

HSP 1 Score: 751.1 bits (1938), Expect = 2.3e-213
Identity = 372/389 (95.63%), Postives = 384/389 (98.71%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKSQEV+D+IHLELEQVLQK+QL ADNPECPIDLNSVF+
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQL-ADNPECPIDLNSVFA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQL+STQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAAS+RSPFQEMYQILE+MKSRNLEPALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR
Sbjct: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYS SQLLS  NW+KVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSHSQLLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. ExPASy TrEMBL
Match: A0A6J1HGI0 (protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1)

HSP 1 Score: 748.8 bits (1932), Expect = 1.1e-212
Identity = 372/389 (95.63%), Postives = 381/389 (97.94%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKS EV+DQIHLELEQVLQK+QL ADNPECP+DL SVFS
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQL-ADNPECPVDLKSVFS 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAASMRSPFQEMYQILEAMKSRNL+PALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           L ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGR
Sbjct: 181 LNECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYSQSQLLS TNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSQSQLLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. ExPASy TrEMBL
Match: A0A6J1KU15 (protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1)

HSP 1 Score: 745.0 bits (1922), Expect = 1.6e-211
Identity = 370/389 (95.12%), Postives = 380/389 (97.69%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MELDSIKDAFDRVTKKQKLSSSKS EV+DQIHLELEQVLQK+QL ADNPECP++L SVFS
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQL-ADNPECPVNLKSVFS 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           ELKTKLKDIAPLTQLESTQKELN AL+KYPKL+EKSFNPDISKAYRNVDFDRHTVNQIIA
Sbjct: 61  ELKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
           SHFYRQGMFELGDCFI+EAGESESAASMRSPFQEMYQILEAMKSRNL+PALNWALNNS+K
Sbjct: 121 SHFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGR 240
           L ECGSDLLLKLHSMQFMEILQ GDRHDALKYARTYLAPLASNH+AELQKLMACLLWTGR
Sbjct: 181 LNECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGR 240

Query: 241 LDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300
           LDCSPYSQSQLLS TNWE VAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 LDCSPYSQSQLLSVTNWENVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           MAGKKQEWQSMKQLPVPVEL REFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCRQLYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of MS011558 vs. TAIR 10
Match: AT4G37880.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 458.4 bits (1178), Expect = 5.8e-129
Identity = 231/392 (58.93%), Postives = 296/392 (75.51%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MEL SIKDAFDRV  KQKLS SK+ E++  +  E+++ L  ++    +    +D  S+ +
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYR-NVDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL+ AL+KYPK++EK  NPDISKAYR NV+FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSS 180
           A+ FYRQGMF++GDCF+ E GESE   S R  F EMY+ILEAMK R+LEPALNWA++NS 
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ YAR ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMN 300
           +LD SPY  S+ LS   W    +EL RQ+CN LG+S ESPL +TV AG Q LP LLK+MN
Sbjct: 241 KLDKSPY--SEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMN 300

Query: 301 -VMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
            VMA KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ+
Sbjct: 301 VVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQT 360

Query: 361 IMKMSKNSTK-SFKCPYCPTDIDATRCRQLYF 390
           I KMSKN +K SFKCPYCPTD+D +RCRQL+F
Sbjct: 361 INKMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388

[Close]

BLAST of MS011558 vs. TAIR 10
Match: AT2G22690.1 (zinc ion binding )

HSP 1 Score: 430.3 bits (1105), Expect = 1.7e-120
Identity = 218/391 (55.75%), Postives = 288/391 (73.66%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MEL ++KDAFDRVTKKQKL  SK+ EV+D++  E+++ L+ +Q   DN E      SV +
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ--EDNHE------SVVA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           +LK   ++IAP+  LE++QKE+N  L+KYPK ++K+ NPDIS AYRNV FD HTV+QI+A
Sbjct: 61  DLKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
             FYRQGM+++GDCFI+E GE +  +S+   F EM  ILEAMK R+L PAL W  +NS K
Sbjct: 121 QFFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNH--MAELQKLMACLLWT 240
           LKE  SDL LKLHS+ F+EI +     +A+ YAR + A  +++     E+QKLM  LLW 
Sbjct: 181 LKEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWI 240

Query: 241 GRLDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFM 300
             L+ SPY  S+ LS   W   A+EL RQ+C  LG+S ESPL VTVAAG Q LP  LK++
Sbjct: 241 RNLNKSPY--SEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYL 300

Query: 301 NVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
           NV+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQS
Sbjct: 301 NVLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQS 360

Query: 361 IMKMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           I +MS+N ++SFKCPYCPTDIDA++C+QLYF
Sbjct: 361 INRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381

[Close]

BLAST of MS011558 vs. TAIR 10
Match: AT2G22690.2 (zinc ion binding )

HSP 1 Score: 430.3 bits (1105), Expect = 1.7e-120
Identity = 218/391 (55.75%), Postives = 288/391 (73.66%), Query Frame = 0


Query: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFS 60
           MEL ++KDAFDRVTKKQKL  SK+ EV+D++  E+++ L+ +Q   DN E      SV +
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ--EDNHE------SVVA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIA 120
           +LK   ++IAP+  LE++QKE+N  L+KYPK ++K+ NPDIS AYRNV FD HTV+QI+A
Sbjct: 61  DLKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILA 120

Query: 121 SHFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSK 180
             FYRQGM+++GDCFI+E GE +  +S+   F EM  ILEAMK R+L PAL W  +NS K
Sbjct: 121 QFFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDK 180

Query: 181 LKECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNH--MAELQKLMACLLWT 240
           LKE  SDL LKLHS+ F+EI +     +A+ YAR + A  +++     E+QKLM  LLW 
Sbjct: 181 LKEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWI 240

Query: 241 GRLDCSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFM 300
             L+ SPY  S+ LS   W   A+EL RQ+C  LG+S ESPL VTVAAG Q LP  LK++
Sbjct: 241 RNLNKSPY--SEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYL 300

Query: 301 NVMAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
           NV+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQS
Sbjct: 301 NVLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQS 360

Query: 361 IMKMSKNSTKSFKCPYCPTDIDATRCRQLYF 390
           I +MS+N ++SFKCPYCPTDIDA++C+QLYF
Sbjct: 361 INRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381

[Close]

BLAST of MS011558 vs. TAIR 10
Match: AT5G09630.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-100
Identity = 188/388 (48.45%), Postives = 274/388 (70.62%), Query Frame = 0


Query: 5   SIKDAFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLAADNPECPIDLNSVFSELKT 64
           +++DAFDRV+KKQKL  S +Q+VID +   ++  L ++QL  D+    ++  SV +EL+ 
Sbjct: 8   TVRDAFDRVSKKQKLYHSVTQDVIDLVCDGIQDTLTRIQLGNDD---GVEPESVLTELRR 67

Query: 65  KLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIASHFY 124
           KL  + P+ QL+ + KE   +LSK  KL+E S++PDIS A  +VDFD + VN+I+  H Y
Sbjct: 68  KLDALLPIIQLQKSHKETKWSLSKLVKLLEVSYHPDISLACFSVDFDINLVNKILIHHCY 127

Query: 125 RQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKLKEC 184
           R+G+F++GDC + EAG  E    +RS F E +QI++++K RN+EPA+ W   N  KLK+ 
Sbjct: 128 REGLFDVGDCLVKEAGREEE-TEVRSQFLEFHQIVDSLKLRNIEPAMRWIFANRGKLKQK 187

Query: 185 GSDLLLKLHSMQFMEILQKGDRHDALKYARTYLA--PLASNHMAELQKLMACLLWTGRLD 244
            S L  KL S+++ +IL++G   DAL+YART+    PL   H  E+QKL+ CLLW G  +
Sbjct: 188 SSKLEFKLLSLKYCDILREGKSDDALEYARTHFTQYPL---HFKEIQKLITCLLWIGNFE 247

Query: 245 CSPYSQSQLLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNVMA 304
            SPY  ++++S + W+KV +ELI ++ + L Q   SPL V ++AG + LP LLK +++MA
Sbjct: 248 KSPY--AEIVSPSCWDKVTKELIMEYHHLLDQPINSPLKVALSAGYESLPSLLKLVHLMA 307

Query: 305 GKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKM 364
             KQEWQ+MKQLPVP+EL  E++FHS FVCPVS++QS+EENPPM + CGHV+ KQS+M++
Sbjct: 308 LTKQEWQAMKQLPVPLELGNEYKFHSAFVCPVSRDQSSEENPPMQLPCGHVISKQSMMRL 367

Query: 365 SKN-STKSFKCPYCPTDIDATRCRQLYF 390
           SKN + ++FKCPYCP +  A+ CRQLYF
Sbjct: 368 SKNCAFRTFKCPYCPAETLASACRQLYF 386

[Close]

BLAST of MS011558 vs. TAIR 10
Match: AT3G55070.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-22
Identity = 81/346 (23.41%), Postives = 159/346 (45.95%), Query Frame = 0


Query: 34  ELEQVLQKVQLAADNPECPIDLNSVFSELKTKLKDIAPLTQLESTQKELNVALSKYPKLI 93
           E+  ++  V   AD+     D  S  + L T+L+ +    +LE      N+   +    I
Sbjct: 69  EVSTIVNGVGELADSDWSKDDTVSRLTCLVTRLQGLK--RKLEEGSNVENLQAQRCRARI 128

Query: 94  EKSFNPDISKAYRNVDFDRHTVNQIIASHFYRQGMFELGDCFINEAGESESAASM--RSP 153
           +   + D+       +++   + +I+  +  R   FE       +  ES +   +     
Sbjct: 129 DHLDSVDVENI---TEWNNTKLKRILVDYMLRMSYFETA----TKLSESSNIMDLVDIDI 188

Query: 154 FQEMYQILEAMKSRNLEPALNWALNNSSKLKECGSDLLLKLHSMQFMEILQKGDRHD--- 213
           F+E  ++++A+K+R +  AL W  +N ++LK+  S    +L   +F+E+++         
Sbjct: 189 FREAKKVIDALKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKK 248

Query: 214 ALKYARTYLAPLASNHMAELQKLMACLLWTGRLDCSPYSQSQLLSATNWEKVAEELIRQF 273
           A++YAR +LA   + HM ELQ ++A L +    +CS Y    L     W+ + ++  ++F
Sbjct: 249 AIQYARKHLASWGTTHMKELQHVLATLAFKSTTECSKY--KVLFELRQWDVLVDQFKQEF 308

Query: 274 CNFLGQSYESPLGVTVAAGVQGL-PPLLKFMNVMAGKKQEWQSMKQLPVPVELDREFQFH 333
           C   G + E  L + + AG+  L  P               ++ ++L +P+   +  Q H
Sbjct: 309 CKLYGMTMEPLLNIYLQAGLSALKTPYGLEEGCTKEDPLSQENFRKLALPLPFSK--QHH 368

Query: 334 SIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCP 374
           S  VC +SKE    ENPP ++  G+V   +++ +M++ +     CP
Sbjct: 369 SKLVCYISKELMDTENPPQVLPNGYVYSTKALKEMAEKNGGKITCP 401

The following BLAST results are available for this feature:

BLAST of MS011558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132999.1	1.7e-218	99.49	protein RMD5 homolog A-like [Momordica charantia] >XP_022133000.1 protein RMD5 h...	[more]
XP_008440495.1	4.7e-213	95.63	PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: prot...	[more]
XP_022963019.1	2.3e-212	95.63	protein RMD5 homolog [Cucurbita moschata] >XP_022963020.1 protein RMD5 homolog [...	[more]
XP_004143429.1	3.0e-212	95.12	protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cuc...	[more]
XP_038883497.1	3.4e-211	95.37	protein RMD5 homolog [Benincasa hispida] >XP_038883498.1 protein RMD5 homolog [B...	[more]

BLAST of MS011558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T075	8.2e-128	58.93	Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1	[more]
Q6GLP4	6.7e-53	34.08	E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1	[more]
Q640V2	1.1e-52	33.99	E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 ...	[more]
O59668	1.9e-52	31.67	LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9H871	3.7e-51	33.07	E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 S...	[more]

BLAST of MS011558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU35	8.0e-219	99.49	protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 ...	[more]
A0A1S3B0U3	2.3e-213	95.63	protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1	[more]
A0A5D3CLJ0	2.3e-213	95.63	Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1HGI0	1.1e-212	95.63	protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1	[more]
A0A6J1KU15	1.6e-211	95.12	protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1	[more]

BLAST of MS011558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37880.1	5.8e-129	58.93	LisH/CRA/RING-U-box domains-containing protein	[more]
AT2G22690.1	1.7e-120	55.75	zinc ion binding	[more]
AT2G22690.2	1.7e-120	55.75	zinc ion binding	[more]
AT5G09630.1	1.1e-100	48.45	LisH/CRA/RING-U-box domains-containing protein	[more]
AT3G55070.1	3.7e-22	23.41	LisH/CRA/RING-U-box domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006595	CTLH, C-terminal LisH motif	SMART	SM00668	ctlh	coord: 151..208 e-value: 2.9E-8 score: 43.5
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 151..208 score: 11.247774
IPR013144	CRA domain	SMART	SM00757	toby_final6	coord: 204..300 e-value: 4.6E-18 score: 76.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 332..375 e-value: 8.0E-4 score: 28.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 332..375 score: 8.683004
IPR024964	CTLH/CRA C-terminal to LisH motif domain	PFAM	PF10607	CLTH	coord: 152..292 e-value: 5.3E-31 score: 107.6
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 332..373 e-value: 2.0E-9 score: 37.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 322..388 e-value: 7.8E-9 score: 36.6
None	No IPR available	PANTHER	PTHR12170:SF11	PROTEIN RMD5 HOMOLOG	coord: 1..389
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 326..384
IPR045098	Fyv10 family	PANTHER	PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	coord: 1..389
IPR044063	Gid-type RING finger domain	PROSITE	PS51867	ZF_RING_GID	coord: 332..375 score: 13.15673
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 111..143 score: 9.010734
IPR037683	Rmd5, degenerated RING (dRING) finger	CDD	cd16652	dRing_Rmd5p_like	coord: 330..376 e-value: 1.24363E-28 score: 103.873

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011558.1	MS011558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity