MS011474 (gene) Bitter gourd (TR) v1

Overview


Name	MS011474
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold239: 2253704 .. 2253874 (+)
RNA-Seq Expression	MS011474
Synteny	MS011474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTATCAGAAGTAGCTTCTCCTTCATAGCGGGAACCGTGCTTGGAATTTATGTGGCTCAAAATTACAATGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGGTGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGACGATGACGAT

mRNA sequence

ATGGGCTTTATCAGAAGTAGCTTCTCCTTCATAGCGGGAACCGTGCTTGGAATTTATGTGGCTCAAAATTACAATGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGGTGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGACGATGACGAT

Coding sequence (CDS)

ATGGGCTTTATCAGAAGTAGCTTCTCCTTCATAGCGGGAACCGTGCTTGGAATTTATGTGGCTCAAAATTACAATGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGGTGGCCAAGCACATCGAAGAAAATTACAGGAAGCCAAAGAAGAGGGACGATGACGAT

Protein sequence

MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD

Homology

[Close]

BLAST of MS011474 vs. NCBI nr
Match: XP_022132505.1 (uncharacterized protein LOC111005345 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of MS011474 vs. NCBI nr
Match: XP_038882745.1 (uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882747.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882749.1 uncharacterized protein LOC120073906 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAGTV+GIYVAQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFIAGTVIGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of MS011474 vs. NCBI nr
Match: XP_008440344.1 (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncharacterized protein E5676_scaffold255G004310 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAG+V GIYVAQNYNVPNIRKLANTGL +AKHIEENYRKPKKRDDDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of MS011474 vs. NCBI nr
Match: XP_038882750.1 (uncharacterized protein LOC120073907 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFI GTV GIY+AQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGFIRSSFSFITGTVFGIYLAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of MS011474 vs. NCBI nr
Match: XP_031743909.1 (uncharacterized protein LOC101209935 [Cucumis sativus] >XP_031743910.1 uncharacterized protein LOC101209935 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAG+V GIYVAQNYNVPNIRKLANTGL +AKHIEENYRKPKKRDDD+
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 57

[Close]

BLAST of MS011474 vs. ExPASy TrEMBL
Match: A0A6J1BSM8 (uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005345 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of MS011474 vs. ExPASy TrEMBL
Match: A0A5D3CR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004310 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAG+V GIYVAQNYNVPNIRKLANTGL +AKHIEENYRKPKKRDDDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of MS011474 vs. ExPASy TrEMBL
Match: A0A1S3B1N0 (uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MGFIRSSFSFIAG+V GIYVAQNYNVPNIRKLANTGL +AKHIEENYRKPKKRDDDD
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of MS011474 vs. ExPASy TrEMBL
Match: A0A6J1IPG1 (uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MG IRS FS IAGTVLGIY+AQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of MS011474 vs. ExPASy TrEMBL
Match: A0A6J1GCJ7 (uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC111452953 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 58
          MG IRS FS IAGTVLGIY+AQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of MS011474 vs. TAIR 10
Match: AT2G35736.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRD 55
          MG  RS FSFI G+V G+Y+AQNYNVPNIRKL NTGLVVAKH+EENYRKPKK D
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKKDD 54

[Close]

BLAST of MS011474 vs. TAIR 10
Match: AT2G35736.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). )

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRD 55
          MG  RS FSFI G+V G+Y+AQNYNVPNIRKL NTGLVVAKH+EENYRKPKK D
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKKDD 54

[Close]

BLAST of MS011474 vs. TAIR 10
Match: AT4G25225.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDD 56
          MG IRSSFSFI GTV GIY+AQ YNVPNI+KL +  + +AK +EE YRKPK RDD
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

The following BLAST results are available for this feature:

BLAST of MS011474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132505.1	1.5e-22	100.00	uncharacterized protein LOC111005345 [Momordica charantia]	[more]
XP_038882745.1	1.6e-21	94.74	uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 unchara...	[more]
XP_008440344.1	8.0e-21	92.98	PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo] >TYK12839.1 uncha...	[more]
XP_038882750.1	1.8e-20	91.23	uncharacterized protein LOC120073907 [Benincasa hispida]	[more]
XP_031743909.1	2.3e-20	91.23	uncharacterized protein LOC101209935 [Cucumis sativus] >XP_031743910.1 uncharact...	[more]

BLAST of MS011474 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSM8	7.1e-23	100.00	uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5D3CR66	3.9e-21	92.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B1N0	3.9e-21	92.98	uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=...	[more]
A0A6J1IPG1	4.3e-20	89.47	uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763...	[more]
A0A6J1GCJ7	4.3e-20	89.47	uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC1114529...	[more]

BLAST of MS011474 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35736.1	7.2e-20	79.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35736.2	7.2e-20	79.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25225.1	2.8e-16	69.09	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027854	Short transmembrane mitochondrial protein 1	PFAM	PF15054	DUF4535	coord: 6..50 e-value: 5.9E-24 score: 83.6
None	No IPR available	PANTHER	PTHR33528	OS07G0239500 PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR33528:SF14	OS07G0239500 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011474.1	MS011474.1	mRNA