MS011422 (gene) Bitter gourd (TR) v1

Overview


Name	MS011422
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	precursor of CEP7-like
Location	scaffold239: 1799810 .. 1800121 (-)
RNA-Seq Expression	MS011422
Synteny	MS011422

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGGCTCTAAGTTTTTAACATACTTCTTCATATTCATGATTTTGTGTCACCAACTTGTTGTTATCGAAGGAGGGAGAAGTCTGAAGGTAAAGAAAAAGCAGCTGCGGTGTGGGAGTTGCTCAAGTCCTGACGTTGCAATCGCCATAACCACCAAACAGGGCGCAGGAAAAAGCAGCAAAAATAATAATAATGCTAAAAGCAGAGCCTCCCTACGGCAGCTGCACCACAGAAGCGCCGATGGGTTTGTGGATGCCTTCCGCCCCACCACACCTGGACACAGCCCCGGCGTTGGCCACTCCATTCAAAAC

mRNA sequence

AAAATGGGCTCTAAGTTTTTAACATACTTCTTCATATTCATGATTTTGTGTCACCAACTTGTTGTTATCGAAGGAGGGAGAAGTCTGAAGGTAAAGAAAAAGCAGCTGCGGTGTGGGAGTTGCTCAAGTCCTGACGTTGCAATCGCCATAACCACCAAACAGGGCGCAGGAAAAAGCAGCAAAAATAATAATAATGCTAAAAGCAGAGCCTCCCTACGGCAGCTGCACCACAGAAGCGCCGATGGGTTTGTGGATGCCTTCCGCCCCACCACACCTGGACACAGCCCCGGCGTTGGCCACTCCATTCAAAAC

Coding sequence (CDS)

AAAATGGGCTCTAAGTTTTTAACATACTTCTTCATATTCATGATTTTGTGTCACCAACTTGTTGTTATCGAAGGAGGGAGAAGTCTGAAGGTAAAGAAAAAGCAGCTGCGGTGTGGGAGTTGCTCAAGTCCTGACGTTGCAATCGCCATAACCACCAAACAGGGCGCAGGAAAAAGCAGCAAAAATAATAATAATGCTAAAAGCAGAGCCTCCCTACGGCAGCTGCACCACAGAAGCGCCGATGGGTTTGTGGATGCCTTCCGCCCCACCACACCTGGACACAGCCCCGGCGTTGGCCACTCCATTCAAAAC

Protein sequence

KMGSKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNNNNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN

Homology

[Close]

BLAST of MS011422 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_002922 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 4   SKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNN 63
           ++ LTYFF+F+IL H LVVIE GR LKVKK  LRCG+C +P     IT  +   + S NN
Sbjct: 4   TRVLTYFFLFIILSHHLVVIE-GRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNN 63

Query: 64  NNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
                     +LHHR ADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 64  ----------KLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of MS011422 vs. NCBI nr
Match: TYK12898.1 (hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 4   SKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNN 63
           ++ LTYFF+F+IL H LVVIE GR LKV KK LRCG+C +P     IT    +G+ ++ +
Sbjct: 4   TRVLTYFFLFIILSHHLVVIE-GRRLKVNKKGLRCGTCMTPTTPKTITK---SGEEAQKS 63

Query: 64  NNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
            N K       LHHR ADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 64  INKK-------LHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of MS011422 vs. NCBI nr
Match: KAG6604188.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-17
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 2   MGSKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSK 61
           M + FLTYFF F+IL HQLV+IE  RSLKV        +  +PD    IT  +     + 
Sbjct: 1   MATHFLTYFFAFLILSHQLVLIE-ARSLKV--------NSINPDTPKTITNSE---PQNS 60

Query: 62  NNNNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
            NN+AK   + ++LHHR ADGFVDAFRPTTPGHSPGVGHSIQN
Sbjct: 61  INNDAK---NTKKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of MS011422 vs. NCBI nr
Match: KAG6663182.1 (hypothetical protein CIPAW_02G009300 [Carya illinoinensis])

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-10
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 10  FFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNNNNAKSR 69
           FF+ +I CH+L+ IE  R+++ KKK LRC  CS PD      TK  A    +    + S 
Sbjct: 16  FFLMIIFCHELLSIE-ARNVEPKKKYLRCAGCSRPD------TKGIASTQPRKFVASPSH 75

Query: 70  ASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
             L      +  GFV+AFRPT+PGHSPGVGHSI N
Sbjct: 76  LHLDGTETTTIIGFVEAFRPTSPGHSPGVGHSIHN 103

[Close]

BLAST of MS011422 vs. NCBI nr
Match: KAG2719845.1 (hypothetical protein I3760_02G010000 [Carya illinoinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 10  FFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNNNNAKSR 69
           FF+ +I CH+L+ IE  R+++ KKK LRC  CS PD      TK  A    +    + S 
Sbjct: 16  FFLMIIFCHELLSIE-ARNVEPKKKYLRCAGCSRPD------TKGIASTQPRKFVASPSH 75

Query: 70  ASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
             L      +  GFV+AFRPT+PGHSPGVGHSI N
Sbjct: 76  LHLDGTKTTTIIGFVEAFRPTSPGHSPGVGHSIHN 103

[Close]

BLAST of MS011422 vs. ExPASy Swiss-Prot
Match: B3H5A9 (Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-04
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 76  HHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
           +  +A G+ D F PTTPGHSPGVGH+++N
Sbjct: 68  NEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of MS011422 vs. ExPASy TrEMBL
Match: A0A0A0KIB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-22
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 4   SKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNN 63
           ++ LTYFF+F+IL H LVVIE GR LKVKK  LRCG+C +P     IT  +   + S NN
Sbjct: 4   TRVLTYFFLFIILSHHLVVIE-GRRLKVKKNGLRCGTCMTPTTPKTITKSEEEAQKSTNN 63

Query: 64  NNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
                     +LHHR ADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 64  ----------KLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of MS011422 vs. ExPASy TrEMBL
Match: A0A5D3CP07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004920 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-21
Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 4   SKFLTYFFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNN 63
           ++ LTYFF+F+IL H LVVIE GR LKV KK LRCG+C +P     IT    +G+ ++ +
Sbjct: 4   TRVLTYFFLFIILSHHLVVIE-GRRLKVNKKGLRCGTCMTPTTPKTITK---SGEEAQKS 63

Query: 64  NNAKSRASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
            N K       LHHR ADG+VDAFRPTTPGHSPGVGHSIQN
Sbjct: 64  INKK-------LHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of MS011422 vs. ExPASy TrEMBL
Match: A0A7N2M1D5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.6e-10
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 10  FFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNNNNAKSR 69
           FF+ +ILCH+L+ IE GR+L  +KK L C  C SP+           G ++K    A S 
Sbjct: 10  FFLLIILCHELLCIE-GRNLNPRKK-LECAKCLSPNT---------KGIATKPRKIAASP 69

Query: 70  ASLRQLHHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
           +S      ++ + +VDAFRPTTPGHSPGVGHSIQN
Sbjct: 70  SSA-----KTTNDYVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of MS011422 vs. ExPASy TrEMBL
Match: V4SPP4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 10  FFIFMILCHQLVVIEGGRSLKVKKKQLRCGSC-SSPDVAIAITTKQGAGKS---SKNNNN 69
           FFI MI  H+L  +E GR+LK+  K L+C  C  SPD         G  KS   +++ NN
Sbjct: 10  FFILMIFSHELCDVE-GRNLKI-SKSLKCAKCLLSPD---------GQSKSKPIARDTNN 69

Query: 70  AKSRASLRQLHH--RSADGFVDAFRPTTPGHSPGVGH 101
             +  SL  LHH  ++ +GFVDAFRPTTPGHSPGVGH
Sbjct: 70  HDASPSL--LHHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of MS011422 vs. ExPASy TrEMBL
Match: U5G8B4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 10  FFIFMILCHQLVVIEGGRSLKVKKKQLRCGSCSSPDVAIAITTKQGAGKSSKNNNNAKSR 69
           FF+ M+L + ++ +E GRSL++KK       C+              GKS + N    S 
Sbjct: 10  FFLLMLLSYNILCVE-GRSLELKKALKHAKRCNP------------GGKSIERNTLLNSA 69

Query: 70  ASLRQLHH--RSADGFVDAFRPTTPGHSPGVGHSIQN 105
           +    LHH  +++DGFV+AFRPT PGHSPGVGHS+ N
Sbjct: 70  SPSNHLHHTVKTSDGFVEAFRPTNPGHSPGVGHSVHN 93

[Close]

BLAST of MS011422 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 76  HHRSADGFVDAFRPTTPGHSPGVGHSIQN 105
           +  +A G+ D F PTTPGHSPGVGH+++N
Sbjct: 68  NEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

[Close]

BLAST of MS011422 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 84  VDAFRPTTPGHSPGVGHSIQN 105
           VD FRPT PGHSPG+GHS+ N
Sbjct: 62  VDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of MS011422 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 85  DAFRPTTPGHSPGVGHSIQN 105
           D F+PTTPGHSPGVGH+++N
Sbjct: 205 DDFKPTTPGHSPGVGHAVKN 224

The following BLAST results are available for this feature:

BLAST of MS011422 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	1.3e-21	59.41	hypothetical protein Csa_002922 [Cucumis sativus]	[more]
TYK12898.1	1.5e-20	59.41	hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa]	[more]
KAG6604188.1	9.8e-17	56.31	Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6663182.1	8.9e-10	46.32	hypothetical protein CIPAW_02G009300 [Carya illinoinensis]	[more]
KAG2719845.1	1.2e-09	46.32	hypothetical protein I3760_02G010000 [Carya illinoinensis]	[more]

BLAST of MS011422 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H5A9	5.8e-04	58.62	Precursor of CEP6 OS=Arabidopsis thaliana OX=3702 GN=CEP6 PE=1 SV=1	[more]

BLAST of MS011422 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB5	6.4e-22	59.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1	[more]
A0A5D3CP07	7.1e-21	59.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N2M1D5	9.6e-10	47.37	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
V4SPP4	8.1e-09	49.48	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 ...	[more]
U5G8B4	1.1e-08	41.24	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041500 PE=3 ...	[more]

BLAST of MS011422 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66816.1	4.1e-05	58.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G23440.1	1.6e-04	76.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	4.6e-04	75.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..104
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 7..104
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 7..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011422.1	MS011422.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development