MS011396 (gene) Bitter gourd (TR) v1

Overview


Name	MS011396
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	scaffold239: 1573076 .. 1573827 (-)
RNA-Seq Expression	MS011396
Synteny	MS011396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTAAAGTATTTGCAGACAAGTATTTAGTGGAGGAGTTTGGAACCATTGGAATTCATACTTCAGATGGTAGAAGTTGGTCTCTTTTGTACAAATGGAGTCGAACCCAGGTGCGAGATTATGCTTACATTTCAGATGGGTGGAAGCGTTTTGTAGAAGAAAGTCTGTTGAAAGAAGGTGATGTTGGGTTCTTTCAACTCATCGAAAAAGATCAACTTTTATTCTCAAAACAAGAGAAGAGCATCTGTAGTACCTCTGCTTCTCCTTCCCTTTTGCCGAAGAAGAAAGTTGCAACTACCAGAAATCCCTTCTTCCAAGTTGATGTTCGATTGGGTAGAAATTCGATGGTAACTCTTCCTTTTTTCACTTCTAAGTATGTTTGTGTTAAAAATATGGATTGAGTGATTAATTTGGGGGGAAATCATTTTTAAGTTGTTTCAATTTTGAGTCCAAACTGTTAATTTCAATTTTGAGAATCAAACAAGAGATTAAATTTATGGGGGGAAAAGCAAAAGCTTGCATATAAGTTGAAGCATATATGATGTTTGATGGGCAGAGAATTCCTATGGAGTTTATGAAGGAACATCTTTCACCAGAAATGCATACTGCGAGGCTTGAGGTTGGGGAAAAAAAATGGAAGGTGATCATGAAGAATTACCAGAGGGGTATCAGATTCTCAGCTGGGTGGCCTGCATTTTGCAGGGACAATGCCTTGGAAGATGAAGATACATGCTTTTTTGAGCTGCTGAAC

mRNA sequence

ATTCCTAAAGTATTTGCAGACAAGTATTTAGTGGAGGAGTTTGGAACCATTGGAATTCATACTTCAGATGGTAGAAGTTGGTCTCTTTTGTACAAATGGAGTCGAACCCAGGTGCGAGATTATGCTTACATTTCAGATGGGTGGAAGCGTTTTGTAGAAGAAAGTCTGTTGAAAGAAGGTGATGTTGGGTTCTTTCAACTCATCGAAAAAGATCAACTTTTATTCTCAAAACAAGAGAAGAGCATCTGTAGTACCTCTGCTTCTCCTTCCCTTTTGCCGAAGAAGAAAGTTGCAACTACCAGAAATCCCTTCTTCCAAGTTGATGTTCGATTGGGTAGAAATTCGATGAGAATTCCTATGGAGTTTATGAAGGAACATCTTTCACCAGAAATGCATACTGCGAGGCTTGAGGTTGGGGAAAAAAAATGGAAGGTGATCATGAAGAATTACCAGAGGGGTATCAGATTCTCAGCTGGGTGGCCTGCATTTTGCAGGGACAATGCCTTGGAAGATGAAGATACATGCTTTTTTGAGCTGCTGAAC

Coding sequence (CDS)

ATTCCTAAAGTATTTGCAGACAAGTATTTAGTGGAGGAGTTTGGAACCATTGGAATTCATACTTCAGATGGTAGAAGTTGGTCTCTTTTGTACAAATGGAGTCGAACCCAGGTGCGAGATTATGCTTACATTTCAGATGGGTGGAAGCGTTTTGTAGAAGAAAGTCTGTTGAAAGAAGGTGATGTTGGGTTCTTTCAACTCATCGAAAAAGATCAACTTTTATTCTCAAAACAAGAGAAGAGCATCTGTAGTACCTCTGCTTCTCCTTCCCTTTTGCCGAAGAAGAAAGTTGCAACTACCAGAAATCCCTTCTTCCAAGTTGATGTTCGATTGGGTAGAAATTCGATGAGAATTCCTATGGAGTTTATGAAGGAACATCTTTCACCAGAAATGCATACTGCGAGGCTTGAGGTTGGGGAAAAAAAATGGAAGGTGATCATGAAGAATTACCAGAGGGGTATCAGATTCTCAGCTGGGTGGCCTGCATTTTGCAGGGACAATGCCTTGGAAGATGAAGATACATGCTTTTTTGAGCTGCTGAAC

Protein sequence

IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEGDVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELLN

Homology

[Close]

BLAST of MS011396 vs. NCBI nr
Match: XP_022132593.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 374.4 bits (960), Expect = 5.5e-100
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG
Sbjct: 394 IPKKFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 453

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM 120
           DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM
Sbjct: 454 DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM 513

Query: 121 EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL 180
           EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL
Sbjct: 514 EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL 573

Query: 181 N 182
           N
Sbjct: 574 N 574

[Close]

BLAST of MS011396 vs. NCBI nr
Match: XP_022132590.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia] >XP_022132592.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia])

HSP 1 Score: 214.9 bits (546), Expect = 5.6e-52
Identity = 105/184 (57.07%), Postives = 129/184 (70.11%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK G
Sbjct: 202 IPKEFAEKYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVG 261

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRL---GRNSMR 120
           DVGFFQLIE  + LF+ +E    S S SPSL PKK+  T  NPFF+VD+         + 
Sbjct: 262 DVGFFQLIENGRFLFTTEE---TSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLN 321

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC F
Sbjct: 322 IPMGFGKKHIPPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLF 381

Query: 181 ELLN 182
           ELLN
Sbjct: 382 ELLN 382

[Close]

BLAST of MS011396 vs. NCBI nr
Match: XP_022132589.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia])

HSP 1 Score: 214.9 bits (546), Expect = 5.6e-52
Identity = 105/184 (57.07%), Postives = 129/184 (70.11%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK G
Sbjct: 224 IPKEFAEKYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVG 283

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRL---GRNSMR 120
           DVGFFQLIE  + LF+ +E    S S SPSL PKK+  T  NPFF+VD+         + 
Sbjct: 284 DVGFFQLIENGRFLFTTEE---TSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLN 343

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC F
Sbjct: 344 IPMGFGKKHIPPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLF 403

Query: 181 ELLN 182
           ELLN
Sbjct: 404 ELLN 404

[Close]

BLAST of MS011396 vs. NCBI nr
Match: XP_022132700.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-51
Identity = 111/186 (59.68%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA  YL E+ G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+G
Sbjct: 239 IPKDFAQNYLPEKVGRIRIQTLDGGSWSLLYKWSPSR-GGFAYISRGWKXFAEENLLKKG 298

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMR--- 120
           DVGFFQ+IEKDQ LF+ +E    S SAS SL PKK  ATTRNPFF+VDV     ++R   
Sbjct: 299 DVGFFQMIEKDQFLFTIEE---TSASASASLSPKKTAATTRNPFFEVDVASIAINVRLCV 358

Query: 121 --IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTC 180
             IPM F K+H+SP +H+ARLEVG+K+WKV MKNY++ IRF++GW  F  +N L+D D+C
Sbjct: 359 QNIPMGFAKKHISPVIHSARLEVGKKQWKVRMKNYEKCIRFTSGWGIFYWENCLQDGDSC 418

Query: 181 FFELLN 182
            FELLN
Sbjct: 419 MFELLN 420

[Close]

BLAST of MS011396 vs. NCBI nr
Match: XP_022133305.1 (B3 domain-containing protein Os12g0591400-like [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-51
Identity = 109/184 (59.24%), Postives = 133/184 (72.28%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA  YL EE G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+G
Sbjct: 72  IPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSR-GGFAYISRGWKXFAEENLLKKG 131

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGR---NSMR 120
           DVGFFQ+IEKDQ LF+ +E     TSAS S  PK   AT RNPFF+VDV       +++ 
Sbjct: 132 DVGFFQMIEKDQFLFTIEE-----TSASASHSPKNNAATIRNPFFEVDVCFKSYQCSTLN 191

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+HLSP +H ARLEVG+K+W V +KNY++ +RF++GW  F R+N L+DEDTC F
Sbjct: 192 IPMGFAKKHLSPVVHGARLEVGQKQWNVRIKNYEKCMRFTSGWGIFHRENCLQDEDTCIF 249

Query: 181 ELLN 182
           ELLN
Sbjct: 252 ELLN 249

[Close]

BLAST of MS011396 vs. ExPASy Swiss-Prot
Match: Q9FK61 (B3 domain-containing protein At5g18090 OS=Arabidopsis thaliana OX=3702 GN=At5g18090 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKE 60
           IPK+F + ++  E     IH  +G RSW ++YK+S  Q R  A    GW R  +E  L+ 
Sbjct: 226 IPKMFEELHMPTEATMFKIHDPEGKRSWDVMYKFSNNQTRFCA----GWIRLAKELGLEI 285

Query: 61  GDVGFFQLIEKDQLL 75
           GDV  F LI+  ++L
Sbjct: 286 GDVCTFTLIKPTEML 296

[Close]

BLAST of MS011396 vs. ExPASy Swiss-Prot
Match: Q10Q26 (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 26/69 (37.68%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 116 MRIPMEFMKEHLSPEMHTARLEVGEKKWKVIMKN--YQRGIR--FSAGWPAFCRDNALED 175
           + +PMEF + H         L +  + W V +K+   +RG R  F  GW  FC DN L  
Sbjct: 173 LNVPMEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAV 232

Query: 176 EDTCFFELL 181
            DTCFF +L
Sbjct: 233 GDTCFFRVL 241

[Close]

BLAST of MS011396 vs. ExPASy TrEMBL
Match: A0A6J1BWP5 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111005418 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.7e-100
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG
Sbjct: 394 IPKKFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 453

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM 120
           DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM
Sbjct: 454 DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMRIPM 513

Query: 121 EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL 180
           EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL
Sbjct: 514 EFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFFELL 573

Query: 181 N 182
           N
Sbjct: 574 N 574

[Close]

BLAST of MS011396 vs. ExPASy TrEMBL
Match: A0A6J1BU95 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005417 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.7e-52
Identity = 105/184 (57.07%), Postives = 129/184 (70.11%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK G
Sbjct: 202 IPKEFAEKYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVG 261

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRL---GRNSMR 120
           DVGFFQLIE  + LF+ +E    S S SPSL PKK+  T  NPFF+VD+         + 
Sbjct: 262 DVGFFQLIENGRFLFTTEE---TSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLN 321

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC F
Sbjct: 322 IPMGFGKKHIPPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLF 381

Query: 181 ELLN 182
           ELLN
Sbjct: 382 ELLN 382

[Close]

BLAST of MS011396 vs. ExPASy TrEMBL
Match: A0A6J1BTG9 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005417 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.7e-52
Identity = 105/184 (57.07%), Postives = 129/184 (70.11%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA+KYL EEFG I +  S+G++W LLYKW+R++   ++YIS GWK F EE+LLK G
Sbjct: 224 IPKEFAEKYLAEEFGIIRVQNSNGKTWPLLYKWTRSRAYAFSYISSGWKCFAEENLLKVG 283

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRL---GRNSMR 120
           DVGFFQLIE  + LF+ +E    S S SPSL PKK+  T  NPFF+VD+         + 
Sbjct: 284 DVGFFQLIENGRFLFTTEE---TSPSTSPSLSPKKEAETATNPFFKVDIHFVSYRSTVLN 343

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+H+ P  HT  L++G KKWKV MKNY R  RFSAGW +F RDNAL+D DTC F
Sbjct: 344 IPMGFGKKHIPPGTHTVMLKLGGKKWKVSMKNYDRCFRFSAGWCSFYRDNALQDGDTCLF 403

Query: 181 ELLN 182
           ELLN
Sbjct: 404 ELLN 404

[Close]

BLAST of MS011396 vs. ExPASy TrEMBL
Match: A0A6J1BT74 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111005498 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.9e-52
Identity = 111/186 (59.68%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA  YL E+ G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+G
Sbjct: 239 IPKDFAQNYLPEKVGRIRIQTLDGGSWSLLYKWSPSR-GGFAYISRGWKXFAEENLLKKG 298

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGRNSMR--- 120
           DVGFFQ+IEKDQ LF+ +E    S SAS SL PKK  ATTRNPFF+VDV     ++R   
Sbjct: 299 DVGFFQMIEKDQFLFTIEE---TSASASASLSPKKTAATTRNPFFEVDVASIAINVRLCV 358

Query: 121 --IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTC 180
             IPM F K+H+SP +H+ARLEVG+K+WKV MKNY++ IRF++GW  F  +N L+D D+C
Sbjct: 359 QNIPMGFAKKHISPVIHSARLEVGKKQWKVRMKNYEKCIRFTSGWGIFYWENCLQDGDSC 418

Query: 181 FFELLN 182
            FELLN
Sbjct: 419 MFELLN 420

[Close]

BLAST of MS011396 vs. ExPASy TrEMBL
Match: A0A6J1BUW1 (B3 domain-containing protein Os12g0591400-like OS=Momordica charantia OX=3673 GN=LOC111005917 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.8e-51
Identity = 109/184 (59.24%), Postives = 133/184 (72.28%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDGRSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKEG 60
           IPK FA  YL EE G I I T DG SWSLLYKWS ++   +AYIS GWK F EE+LLK+G
Sbjct: 72  IPKDFAQNYLPEEVGRIRIQTLDGGSWSLLYKWSPSR-GGFAYISRGWKXFAEENLLKKG 131

Query: 61  DVGFFQLIEKDQLLFSKQEKSICSTSASPSLLPKKKVATTRNPFFQVDVRLGR---NSMR 120
           DVGFFQ+IEKDQ LF+ +E     TSAS S  PK   AT RNPFF+VDV       +++ 
Sbjct: 132 DVGFFQMIEKDQFLFTIEE-----TSASASHSPKNNAATIRNPFFEVDVCFKSYQCSTLN 191

Query: 121 IPMEFMKEHLSPEMHTARLEVGEKKWKVIMKNYQRGIRFSAGWPAFCRDNALEDEDTCFF 180
           IPM F K+HLSP +H ARLEVG+K+W V +KNY++ +RF++GW  F R+N L+DEDTC F
Sbjct: 192 IPMGFAKKHLSPVVHGARLEVGQKQWNVRIKNYEKCMRFTSGWGIFHRENCLQDEDTCIF 249

Query: 181 ELLN 182
           ELLN
Sbjct: 252 ELLN 249

[Close]

BLAST of MS011396 vs. TAIR 10
Match: AT5G18090.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-06
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 1   IPKVFADKYLVEEFGTIGIHTSDG-RSWSLLYKWSRTQVRDYAYISDGWKRFVEESLLKE 60
           IPK+F + ++  E     IH  +G RSW ++YK+S  Q R  A    GW R  +E  L+ 
Sbjct: 226 IPKMFEELHMPTEATMFKIHDPEGKRSWDVMYKFSNNQTRFCA----GWIRLAKELGLEI 285

Query: 61  GDVGFFQLIEKDQLL 75
           GDV  F LI+  ++L
Sbjct: 286 GDVCTFTLIKPTEML 296

The following BLAST results are available for this feature:

BLAST of MS011396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132593.1	5.5e-100	99.45	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
XP_022132590.1	5.6e-52	57.07	B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charan...	[more]
XP_022132589.1	5.6e-52	57.07	B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charan...	[more]
XP_022132700.1	1.6e-51	59.68	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
XP_022133305.1	3.6e-51	59.24	B3 domain-containing protein Os12g0591400-like [Momordica charantia]	[more]

BLAST of MS011396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK61	3.1e-05	38.67	B3 domain-containing protein At5g18090 OS=Arabidopsis thaliana OX=3702 GN=At5g18...	[more]
Q10Q26	2.0e-04	37.68	B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of MS011396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWP5	2.7e-100	99.45	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A6J1BU95	2.7e-52	57.07	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica char...	[more]
A0A6J1BTG9	2.7e-52	57.07	B3 domain-containing transcription factor VRN1-like isoform X1 OS=Momordica char...	[more]
A0A6J1BT74	7.9e-52	59.68	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A6J1BUW1	1.8e-51	59.24	B3 domain-containing protein Os12g0591400-like OS=Momordica charantia OX=3673 GN...	[more]

BLAST of MS011396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18090.1	2.2e-06	38.67	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 104..181 e-value: 1.0E-4 score: 31.7 coord: 1..81 e-value: 0.066 score: 12.1
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 1..71 e-value: 1.6E-11 score: 44.0 coord: 112..179 e-value: 1.7E-12 score: 47.1
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..81 score: 13.690386
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 101..181 score: 11.307232
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 116..179 e-value: 1.28377E-10 score: 53.8709
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 1..71 e-value: 9.70272E-10 score: 51.5597
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 86..181 e-value: 6.8E-20 score: 73.0 coord: 1..78 e-value: 1.0E-13 score: 53.1
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 102..180
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 1..81
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 85..181
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 85..181 coord: 1..75
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011396.1	MS011396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding