Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACACCTTCCAAATTATACAGCAGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGGTACTGAAAATACCCTTTTCTTCTTATCCTTCAATTATCAAACAGGGAAATTAAAGATCCAAACTTTTCAAAATCTAAGGCCGTTTTCAAACTTTAGAAACTGGATCTTGATTTGGGAATAACTTAGAAAATATTGTTTGGTTGAATCTCAATTTGGGCAGATTGGTATTTGTGGGTTCCACTTTATGGCTGTGCTTGTGCTGTGAATCTTCCCAACTGGGTTATCTCCTCAGAAACCATAGGTTATGTTGCCAAGGCTACACTGGGACTTGGAATTTATTTGTGGGTAAAAGTGGTAGCAGAGGATTATGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTGAGGGAGAAAACAGGAAGTGGATTGGTTATGGCTTCCATGATTTTAGTGCTAATGGCAGAATCACCATCCCCAAAACTTCACAGAACATCAAAAAGTTTAAGGCCCTTTCCAAGATATCTCCCATGTGGTAAGGCTAGCTTATTCAAAACACTTCTTTTTCTTTTCTTTTTCTTTTTATTTAGATTCTACTTGGTCTTATGAATTTTGCACTAAAAAAAACTACTATAAACTTGAAATGTATGTCTGATTTTGAGTATGGAAATTTGGTTGCAGGAATGGCAACGTTGGTGGCATTTAGTTATGGGCTTCCCGTTTTCTTCTTCTTGGTTCAGAAGGGGGAAATGAAATTC
mRNA sequence
ATGGCAACACCTTCCAAATTATACAGCAGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGATTGGTATTTGTGGGTTCCACTTTATGGCTGTGCTTGTGCTGTGAATCTTCCCAACTGGGTTATCTCCTCAGAAACCATAGGTTATGTTGCCAAGGCTACACTGGGACTTGGAATTTATTTGTGGGTAAAAGTGGTAGCAGAGGATTATGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTGAGGGAGAAAACAGGAAGTGGATTGGTTATGGCTTCCATGATTTTAGTGCTAATGGCAGAATCACCATCCCCAAAACTTCACAGAACATCAAAAAGTTTAAGGCCCTTTCCAAGATATCTCCCATGTGGAATGGCAACGTTGGTGGCATTTAGTTATGGGCTTCCCGTTTTCTTCTTCTTGGTTCAGAAGGGGGAAATGAAATTC
Coding sequence (CDS)
ATGGCAACACCTTCCAAATTATACAGCAGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGATTGGTATTTGTGGGTTCCACTTTATGGCTGTGCTTGTGCTGTGAATCTTCCCAACTGGGTTATCTCCTCAGAAACCATAGGTTATGTTGCCAAGGCTACACTGGGACTTGGAATTTATTTGTGGGTAAAAGTGGTAGCAGAGGATTATGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTGAGGGAGAAAACAGGAAGTGGATTGGTTATGGCTTCCATGATTTTAGTGCTAATGGCAGAATCACCATCCCCAAAACTTCACAGAACATCAAAAAGTTTAAGGCCCTTTCCAAGATATCTCCCATGTGGAATGGCAACGTTGGTGGCATTTAGTTATGGGCTTCCCGTTTTCTTCTTCTTGGTTCAGAAGGGGGAAATGAAATTC
Protein sequence
MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYVAKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPSPKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF
Homology
BLAST of MS011375 vs. NCBI nr
Match:
XP_022133255.1 (transmembrane protein 220 [Momordica charantia])
HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV
Sbjct: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS
Sbjct: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKG+MKF
Sbjct: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGKMKF 165
BLAST of MS011375 vs. NCBI nr
Match:
XP_038881310.1 (transmembrane protein 220 isoform X2 [Benincasa hispida])
HSP 1 Score: 257.3 bits (656), Expect = 9.0e-65
Identity = 133/169 (78.70%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYS CSLLM FLFAYSTAVQFNDPDWYLWVPLYGCACAVNL W +S E + +V
Sbjct: 1 MATPSKLYSGCSLLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWYVSIEAMKHV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMA---- 120
AKAT+G GI LWVKVVAEDY+NGIAGFLSLDLSERVVREKTGSGLV+ SMIL L+A
Sbjct: 61 AKATMGFGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120
Query: 121 ESPSPKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
S S ++HRTSKS R FPRYL GMA LVAFSYGLP+ FFLVQKG+MKF
Sbjct: 121 SSSSTRIHRTSKSKREFPRYLTYGMAWLVAFSYGLPI-FFLVQKGKMKF 168
BLAST of MS011375 vs. NCBI nr
Match:
KAG6595075.1 (hypothetical protein SDJN03_11628, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 255.8 bits (652), Expect = 2.6e-64
Identity = 129/165 (78.18%), Postives = 143/165 (86.67%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYS CSLLMAFLFAYSTAVQFNDPDWYLW+PLYGCACAVNL NW +S E + YV
Sbjct: 1 MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLEGVAYV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGI LWVKVVAED+VNGIAGF+SLDLSERVVREKTGSGLV++SM+L L+AES S
Sbjct: 61 AKATLGLGICLWVKVVAEDFVNGIAGFISLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
RT K R F RY+ GMA+LVAFSYGLP+FFFL+Q G+M F
Sbjct: 121 S--IRTRKGERAFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 163
BLAST of MS011375 vs. NCBI nr
Match:
XP_023517546.1 (uncharacterized protein LOC111781274 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 255.4 bits (651), Expect = 3.4e-64
Identity = 130/165 (78.79%), Postives = 143/165 (86.67%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYS CSLLMAFLFAYSTAVQFNDPDWYLW+PLYGCACAVNL NW +S + + YV
Sbjct: 1 MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGI LWVKVVAED+VNGIAGFLSLDLSERVVREKTGSGLV++SM+L L+AES S
Sbjct: 61 AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
RT K R F RY+ GMA+LVAFSYGLP+FFFLVQ G+M F
Sbjct: 121 S--IRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 163
BLAST of MS011375 vs. NCBI nr
Match:
XP_004141949.1 (transmembrane protein 220 isoform X2 [Cucumis sativus] >KGN48459.1 hypothetical protein Csa_003964 [Cucumis sativus])
HSP 1 Score: 254.2 bits (648), Expect = 7.6e-64
Identity = 131/168 (77.98%), Postives = 145/168 (86.31%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYSSCS+LM FLFAYSTAVQFNDPDWYLWVPLYGCACAVNL W +S E + V
Sbjct: 1 MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMIL-VLMAESP 120
AKA +G+GI LWVKVVAEDY+NGIAGFLSLDLSERVVREKTGSGLV+ SMIL ++ A S
Sbjct: 61 AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120
Query: 121 SPKLHRT--SKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
SPKL RT SKS R FPR+L G+A LVAFSYGLP+FFFLV+KG+MKF
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168
BLAST of MS011375 vs. ExPASy TrEMBL
Match:
A0A6J1BUR8 (transmembrane protein 220 OS=Momordica charantia OX=3673 GN=LOC111005894 PE=4 SV=1)
HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV
Sbjct: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS
Sbjct: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKG+MKF
Sbjct: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGKMKF 165
BLAST of MS011375 vs. ExPASy TrEMBL
Match:
A0A0A0KI28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487800 PE=4 SV=1)
HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 131/168 (77.98%), Postives = 145/168 (86.31%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYSSCS+LM FLFAYSTAVQFNDPDWYLWVPLYGCACAVNL W +S E + V
Sbjct: 1 MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMIL-VLMAESP 120
AKA +G+GI LWVKVVAEDY+NGIAGFLSLDLSERVVREKTGSGLV+ SMIL ++ A S
Sbjct: 61 AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120
Query: 121 SPKLHRT--SKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
SPKL RT SKS R FPR+L G+A LVAFSYGLP+FFFLV+KG+MKF
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168
BLAST of MS011375 vs. ExPASy TrEMBL
Match:
A0A6J1HG20 (uncharacterized protein LOC111463236 OS=Cucurbita moschata OX=3662 GN=LOC111463236 PE=4 SV=1)
HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYS CSLLMAFLFAYSTAVQFNDPDWYLW+PLYGCACAVNL NW +S + + Y+
Sbjct: 1 MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGI LWVKVVAED+VNGIAGFLSLDLSERVVREKTGSGLV++SM+L L+AES S
Sbjct: 61 AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
RT K R F RY+ GMA+LVAFSYGLP+FFFL+Q G+M F
Sbjct: 121 S--IRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 163
BLAST of MS011375 vs. ExPASy TrEMBL
Match:
A0A6J1KP55 (uncharacterized protein LOC111497019 OS=Cucurbita maxima OX=3661 GN=LOC111497019 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 4.8e-64
Identity = 130/165 (78.79%), Postives = 143/165 (86.67%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MATPSKLYS CSLLMAFLFAYSTAVQFNDPDWYLW+PLYGCACAVNL NW +S E + YV
Sbjct: 1 MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLEGVAYV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
AKATLGLGI LWVKVVAED+V+GIAGFLSLDLSERVVREKTGSGLV++SM+L L+AES S
Sbjct: 61 AKATLGLGICLWVKVVAEDFVHGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
RT K R F RY+ GMA+LVAFSYGLP+FFFLVQ G+M F
Sbjct: 121 S--IRTRKGERVFSRYVSHGMASLVAFSYGLPIFFFLVQMGKMNF 163
BLAST of MS011375 vs. ExPASy TrEMBL
Match:
A0A5D3CNK6 (Transmembrane protein 220 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005370 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 4.8e-64
Identity = 129/166 (77.71%), Postives = 143/166 (86.14%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MA PSKLYSSCS+LM FLFAYSTAVQFNDPDWYLWVPLYGCACAVNL W +S E + V
Sbjct: 1 MAIPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMIL-VLMAESP 120
AKA +G+GI LWVKVVAEDY+NGIAGFLSLDLSERVVREKTGSGLV+ SMIL ++ A S
Sbjct: 61 AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120
Query: 121 SPKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMKF 166
SPKL TSKS R FPR+L G+A LVAFSYGLP+FFFLV+KG+MKF
Sbjct: 121 SPKLRITSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 166
BLAST of MS011375 vs. TAIR 10
Match:
AT2G23755.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 84/164 (51.22%), Postives = 103/164 (62.80%), Query Frame = 0
Query: 1 MATPSKLYSSCSLLMAFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLPNWVISSETIGYV 60
MA P L+ CSLLMAFLFAYS +VQ NDPDWY W PLY AC VNL N+ + + +
Sbjct: 1 MAKPRNLFRVCSLLMAFLFAYSASVQLNDPDWYFWFPLYTLACVVNLINYRRRIKLM--M 60
Query: 61 AKATLGLGIYLWVKVVAEDYVNGIAGFLSLDLSERVVREKTGSGLVMASMILVLMAESPS 120
+ L LG++L VKV+AED + G LSLDL+ RVVREK GSGLV+ASM+L L A S S
Sbjct: 61 MRTALSLGVFLLVKVIAEDVITEKVGVLSLDLTHRVVREKIGSGLVIASMVLQLQASSSS 120
Query: 121 PKLHRTSKSLRPFPRYLPCGMATLVAFSYGLPVFFFLVQKGEMK 165
K + GM V F YGLP +FF ++KGE+K
Sbjct: 121 SKT-------------IDFGMVATVIFGYGLPFWFFTIEKGEIK 149
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022133255.1 | 3.8e-87 | 99.39 | transmembrane protein 220 [Momordica charantia] | [more] |
XP_038881310.1 | 9.0e-65 | 78.70 | transmembrane protein 220 isoform X2 [Benincasa hispida] | [more] |
KAG6595075.1 | 2.6e-64 | 78.18 | hypothetical protein SDJN03_11628, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023517546.1 | 3.4e-64 | 78.79 | uncharacterized protein LOC111781274 [Cucurbita pepo subsp. pepo] | [more] |
XP_004141949.1 | 7.6e-64 | 77.98 | transmembrane protein 220 isoform X2 [Cucumis sativus] >KGN48459.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1BUR8 | 1.8e-87 | 99.39 | transmembrane protein 220 OS=Momordica charantia OX=3673 GN=LOC111005894 PE=4 SV... | [more] |
A0A0A0KI28 | 3.7e-64 | 77.98 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487800 PE=4 SV=1 | [more] |
A0A6J1HG20 | 3.7e-64 | 77.58 | uncharacterized protein LOC111463236 OS=Cucurbita moschata OX=3662 GN=LOC1114632... | [more] |
A0A6J1KP55 | 4.8e-64 | 78.79 | uncharacterized protein LOC111497019 OS=Cucurbita maxima OX=3661 GN=LOC111497019... | [more] |
A0A5D3CNK6 | 4.8e-64 | 77.71 | Transmembrane protein 220 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
Match Name | E-value | Identity | Description | |
AT2G23755.1 | 2.9e-37 | 51.22 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |