MS011330 (gene) Bitter gourd (TR) v1

Overview


Name	MS011330
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF3511)
Location	scaffold239: 1063630 .. 1063872 (+)
RNA-Seq Expression	MS011330
Synteny	MS011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGAAGCAAATCATTCTGTGGGTCTTACTCAAATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGCACAATCAACAAGGAAGATGGGGACAATCCAGAGCTCAAGAGGAGGCAAAGAGTAGCCACTTACAATAGGTATTCAATGGAAGGTAAGCTGAAGAAATCCTTGAGGAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGAC

mRNA sequence

ATGGACAGAAGCAAATCATTCTGTGGGTCTTACTCAAATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGCACAATCAACAAGGAAGATGGGGACAATCCAGAGCTCAAGAGGAGGCAAAGAGTAGCCACTTACAATAGGTATTCAATGGAAGGTAAGCTGAAGAAATCCTTGAGGAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGAC

Coding sequence (CDS)

ATGGACAGAAGCAAATCATTCTGTGGGTCTTACTCAAATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGCACAATCAACAAGGAAGATGGGGACAATCCAGAGCTCAAGAGGAGGCAAAGAGTAGCCACTTACAATAGGTATTCAATGGAAGGTAAGCTGAAGAAATCCTTGAGGAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGAC

Protein sequence

MDRSKSFCGSYSNVRFGFEDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSMEGKLKKSLRNSFKWIKNKFSHSFYDD

Homology

[Close]

BLAST of MS011330 vs. NCBI nr
Match: KAE8647476.1 (hypothetical protein Csa_003778 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MDRSKSFCGSYS----NVRFGFEDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSME 60
           M+RSKS  GSYS    +VRFGFED PKSYSFNGTI KED  N ELKRRQRVATYN YSME
Sbjct: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSME 124

Query: 61  GKLKKSLRNSFKWIKNKFSHSFYDD 82
           GKLKKSLRNSFKWIKNK SHSFYDD
Sbjct: 125 GKLKKSLRNSFKWIKNKISHSFYDD 149

[Close]

BLAST of MS011330 vs. NCBI nr
Match: TYK12983.1 (hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 6.9e-26
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MDRSKSFCGSYS----NVRFGFEDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSME 60
          M+RSKS  GSYS    +VRFGFED PKSYSF+GT+ KED  N ELKRRQRVATYN YSME
Sbjct: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSME 61

Query: 61 GKLKKSLRNSFKWIKNKFSHSFYD 81
          GKLKKSLRNSFKWIKNK SHSFY+
Sbjct: 62 GKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of MS011330 vs. NCBI nr
Match: PRQ49076.1 (hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MDRSKSFCG----SYSNVRFGFEDRPKSYSFNGTINKEDG---------DNPELKRRQRV 60
          M++SKSF G    +Y+  RFGFEDRPKSYSFNG ++K +G          NPEL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 61 ATYNRYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 82
          A YN Y+MEGK K SLRNSFKWIK KF  +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of MS011330 vs. NCBI nr
Match: KAF8012030.1 (hypothetical protein BT93_I0224 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MDRSKSFCG---SYSNVRFGFEDRPKSYSFNGTINKEDG----DNPELKRRQRVATYNRY 60
          M++SKSF G   SYS +R GFEDR KSYSFNG  N  DG     NPELKRR+RVA+YN Y
Sbjct: 1  MEKSKSFNGYSASYSEIRLGFEDRSKSYSFNGPSNTPDGLESSGNPELKRRRRVASYNMY 60

Query: 61 SMEGKLKKSLRNSFKWIKNKFSHSF 79
          +MEGKLK SLRNSFKWIK+KFS  F
Sbjct: 61 TMEGKLKSSLRNSFKWIKSKFSDDF 85

[Close]

BLAST of MS011330 vs. NCBI nr
Match: CAN64856.1 (hypothetical protein VITISV_030491 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   MDRSKSFCG---SYSNVRFGFEDRPKSYSFNGTINKED----GDNPELKRRQRVATYNRY 60
           M++S+SF     SYS+ R GFE R  SYSFNG I K D     DNPE+KRR+RVA+YN Y
Sbjct: 122 MEKSRSFPDHPYSYSDARHGFELRSNSYSFNGPIGKVDEFATSDNPEMKRRKRVASYNMY 181

Query: 61  SMEGKLKKSLRNSFKWIKNKFSHSFYDD 82
           SMEGKLK SLRNSFKWIKNKF+  +YDD
Sbjct: 182 SMEGKLKSSLRNSFKWIKNKFTDDYYDD 209

[Close]

BLAST of MS011330 vs. ExPASy TrEMBL
Match: A0A0A0KFC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MDRSKSFCGSYS----NVRFGFEDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSME 60
          M+RSKS  GSYS    +VRFGFED PKSYSFNGTI KED  N ELKRRQRVATYN YSME
Sbjct: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSME 61

Query: 61 GKLKKSLRNSFKWIKNKFSHSFYDD 82
          GKLKKSLRNSFKWIKNK SHSFYDD
Sbjct: 62 GKLKKSLRNSFKWIKNKISHSFYDD 86

[Close]

BLAST of MS011330 vs. ExPASy TrEMBL
Match: A0A5D3CM35 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005800 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MDRSKSFCGSYS----NVRFGFEDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSME 60
          M+RSKS  GSYS    +VRFGFED PKSYSF+GT+ KED  N ELKRRQRVATYN YSME
Sbjct: 2  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSME 61

Query: 61 GKLKKSLRNSFKWIKNKFSHSFYD 81
          GKLKKSLRNSFKWIKNK SHSFY+
Sbjct: 62 GKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of MS011330 vs. ExPASy TrEMBL
Match: A0A2P6RRL4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MDRSKSFCG----SYSNVRFGFEDRPKSYSFNGTINKEDG---------DNPELKRRQRV 60
          M++SKSF G    +Y+  RFGFEDRPKSYSFNG ++K +G          NPEL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 61 ATYNRYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 82
          A YN Y+MEGK K SLRNSFKWIK KF  +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of MS011330 vs. ExPASy TrEMBL
Match: A0A438F5V3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_067029 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   MDRSKSFCG---SYSNVRFGFEDRPKSYSFNGTINKED----GDNPELKRRQRVATYNRY 60
           M++S+SF     SYS+ R GFE R  SYSFNG I K D     DNPE+KRR+RVA+YN Y
Sbjct: 68  MEKSRSFPDHPYSYSDARHGFELRSNSYSFNGPIGKVDEFATSDNPEMKRRKRVASYNMY 127

Query: 61  SMEGKLKKSLRNSFKWIKNKFSHSFYDD 82
           SMEGKLK SLRNSFKWIKNKF+  +YDD
Sbjct: 128 SMEGKLKSSLRNSFKWIKNKFTDDYYDD 155

[Close]

BLAST of MS011330 vs. ExPASy TrEMBL
Match: F6H4C1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g01910 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MDRSKSFCG---SYSNVRFGFEDRPKSYSFNGTINKED----GDNPELKRRQRVATYNRY 60
          M++S+SF     SYS+ R GFE R  SYSFNG I K D     DNPE+KRR+RVA+YN Y
Sbjct: 1  MEKSRSFPDHPYSYSDARHGFELRSNSYSFNGPIGKVDEFATSDNPEMKRRKRVASYNMY 60

Query: 61 SMEGKLKKSLRNSFKWIKNKFSHSFYDD 82
          SMEGKLK SLRNSFKWIKNKF+  +YDD
Sbjct: 61 SMEGKLKSSLRNSFKWIKNKFTDDYYDD 88

[Close]

BLAST of MS011330 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-12
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MDRSKS---FCGSYSNVRFGF-EDRPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSME 60
          M  SKS   +  S+S   FG+ ++R  SY+FNG     D   PE+KR++RVA+YN ++ E
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPCINTD---PEMKRKKRVASYNLFATE 61

Query: 61 GKLKKSLRNSFKWIKNKFS 76
           KLK +L+NSFKWIKNKFS
Sbjct: 62 EKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of MS011330 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 21  RPKSYSFNGTINKEDGDNPELKRRQRVATYNRYSMEGKLKKSLRNSFKWIK 72
           RP+  S + T+ K   ++PE+KR++RVA Y  YS EGK+K +LR S+KWIK
Sbjct: 64  RPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIK 114

[Close]

BLAST of MS011330 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 38  NPELKRRQRVATYNRYSMEGKLKKSLRNSFKWIKNKFSHSFY 80
           +PEL+R++RVA+Y  Y +EGK+K S RNSF+W+K +++   Y
Sbjct: 61  DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVY 102

[Close]

BLAST of MS011330 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 38  NPELKRRQRVATYNRYSMEGKLKKSLRNSFKWIKNK 74
           +P+L+R++RV +Y  Y++EGKLK S R SFKWIK+K
Sbjct: 75  DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

[Close]

BLAST of MS011330 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 47.8 bits (112), Expect = 5.0e-06
Identity = 18/37 (48.65%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 40  ELKRRQRVATYNRYSMEGKLKKSLRNSFKWIKNKFSH 77
           E KR++R+ATY  Y++EGK+K +++  F WIK+++SH
Sbjct: 70  ETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSH 106

The following BLAST results are available for this feature:

BLAST of MS011330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647476.1	5.6e-28	82.35	hypothetical protein Csa_003778 [Cucumis sativus]	[more]
TYK12983.1	6.9e-26	78.57	hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa]	[more]
PRQ49076.1	4.3e-20	59.57	hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis]	[more]
KAF8012030.1	7.4e-20	68.24	hypothetical protein BT93_I0224 [Corymbia citriodora subsp. variegata]	[more]
CAN64856.1	2.1e-19	64.77	hypothetical protein VITISV_030491 [Vitis vinifera]	[more]

BLAST of MS011330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFC2	2.7e-28	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1	[more]
A0A5D3CM35	3.3e-26	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P6RRL4	2.1e-20	59.57	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4...	[more]
A0A438F5V3	1.0e-19	64.77	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_067029 PE=4 SV=1	[more]
F6H4C1	1.0e-19	64.77	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g01910 PE=4 SV=...	[more]

BLAST of MS011330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	2.1e-12	50.63	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.5e-07	50.98	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	4.5e-07	50.00	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	2.9e-06	58.33	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	5.0e-06	48.65	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 37..78 e-value: 3.5E-22 score: 78.0
None	No IPR available	PANTHER	PTHR33193:SF41	SUBFAMILY NOT NAMED	coord: 1..76
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011330.1	MS011330.1	mRNA