MS011321 (gene) Bitter gourd (TR) v1

Overview


Name	MS011321
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding protein 39 isoform X2
Location	scaffold239: 970254 .. 977307 (-)
RNA-Seq Expression	MS011321
Synteny	MS011321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCTGTGGAGGACCAGGACAATAGGGACTCCAAGAAGGCGAAGAAGAATGAGAGTGAGAGGAATGAGAAAAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGATGGTTCCGGTGGCCGCGAGGATGAGGAGGTGAAGGTCAAGAGGTCGAGAAGCGAGCATGAAAATGGGAAGGAGGACAGGGATCAGTCGGGCCGAGGGAGGGATCGGCATCGGAGAGATAGAGAGGAAGAAACAGATGCGGGAAAAGAGAGGAACCGTACGAGAGAGAGGGGTAGCAGTGAGAAGGAGAGGGATAGAGACAGGAACAGAGAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAGGGACAGAAGGGATAAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGACAAGGATAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAGAGAAAGGAGAGATAGGGAGAGGAGGGAGCGGGAAAGAGAAGAGGAGAGATCGCGGCGAAGCAGGAGTCGGTCTGTTCGGGAGCGAGAACGTGAAGTTGATGTCAGAGAGAACAGGTACCAGTTCGATCCTGTGTTCTTTGTTGACTGTGATCTTGAAAGCTATCCGTTGACTGTTGGGTGTTGCTTGTATAGATTTATTGGTTTGCTTGTTACTCGTTATTCTTGAAAAGTGTGGTGTGTAAACTTTGGTAATTGCTAGTTGATATCTTCTTTAAACTTGAAATTGTCATATTAAACAACGTGACATTGTATCTAGTTAGATTAGAATCCGTTTTATGCTCTGGGATTTGAAACGGGTAAATATTAGAGCTAATTCCCAGGCCATTGGGCTGACATTGATAGGACTAGATATTTGATGGAAATTAGGTTCATTTTCAAACTTGGCAACGGCAGTAGATTATTATTATTTTTGTTTGCTTCGGTTGAAAAGAAATAAACATTAGGATTTTCATTGATAAACACGAGTTTTGTTGATTTTTGTGATTTTTGTGAGATTATACTGTGTACTGCATCAACTTGGAGTGCTCTACAGGCTACACAACACTTGTATAACTTCTCTGATTCCAATATCAACTTGTGTTTGGTTACCTCTTTTACGCAAGGGGATTCCTCATCTCCTAGGACATTAAGTTCTTTTTTCTCGTCTGGTGAAAGCTTCTGTTTCTTGATAATAATTTTGTTTGGAATGGGATAGATTTAAGGGAATAAAAAAATGTTTTAACTTTTAATGGGAATAAGAAAAGCCGAGTCGTTTTTAATTTCTTAAAGATTTTTTTGTTTAAATTGTTATATTGTCTTTCATCTTTTCCCTGATGTTTTGGATGTGCCAATGGCAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCTGATCCAGAGAGGGATCAAAGAACTGTATTTGCTTATCAGGTTGATGTCCTCTTCTGTAAATTTCCTCACCTTTTACGTATTATATTGTGCTGATTATTGTCGTTATCCTTTATATTCTTCGTACAGATGCCTTTGAAGGCCACTGAGAGAGATGTTTACGAATTCTTTTCAAAAGCAGGAAAGGTATTTGAAACTTATTACTGAAGAGAAGATTTGAGTGTTTATTTTTAATTTTTGTTGAAATTTAACAATTAAAGATACGAGCAGTCATGCTTTCATCTATAACTTCTGTGTGCCATGCCCCCTGCACATGTTCACCTCTGTAACATGGAGCAGAATAGATACATTTTTGTTGCAATGTTATTGCTACAAACGTTATGATTGCATACATATTGAGATAGATTTGCTTCGTATTGCAGTTACTGTTCCTCTGCCTTCAGTTTCGAAACTATAATCAATTTCTTCTATCTCAACATTCTGTTTATATGGGGTGAGTGAAAATGTATATATGAGTTCTGTCGTGATCTCATTGATGGCCGGATGGTGCTTTGCCTCGAGTGTAAAGAATGGGAACCTTTATTGCTTTTTCTCTTTGCTGGCTTCCTAATAACCTGCACTTGTCGTTCTTTCTATTTTCAGGTGAGAGATGTACGGCTGATTATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTGGTTTTGGGATGAGTAATTTTTGTATCCTATGCTTGTAATCTTGTTAATATGGTTTATTAACATAATAGTTTTCAAGTATCAAATTTAACTGTATTTTTAAATGAACTAGAACTAGCAATGCGATAATGATGAGGGATGGTGGGAATACAATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTTTCCTTTGATGTTTTCCCCATCGTACTCCTAATTTTGCTCCTCTATGTTTTTGTGCAGATAAGAAACAGTCCTAACTCCTATGACTCTGTTATCTCTGGTCTTGGTTTTAGATTCATCTCACTCTACTATAAAATATCCTAGTTCAAATTAACTTTCTGACCTTGATTTGTGACGCTTTATTAAAATAATCATGCTTGGTCTTGTATCATCTTCAATCATTGCTTCTCTTCCCTATTTTCTTCTGTTTTTTCCTTGGAAGAATGCATCAAGGGCTCTTGCTTGTTTTTTCCTCTATCATCTTGCTTTTTTATAAAAATTAAAAAAAAGGGAAATTGGTCTTCTATGGTATTTAGACTTCCTCACAGTACTTATTGTCTGATGATTTTCAATAATGACTTTGTTTGGGGATTGATTTCGGTATGCAAATGTGCTCATTGAAAAGATTAGTAAGGTGGGTGAATAGTCACCGTATGATCCCCTCCCTCTTCTAGTTCTGGTCTACACTGGTCATCTGCTATTTGGCTCTGTGTTGCCTCTTTATTTGATGAACTGAACTGTTTGTCTAATCAGTCAGAAGAAACCCAGAGGTCTCTGCACTTTGTGTATTTTGTTTCTCTGAGGCTTTTTAAGTTTTGTTTCTTATCTTTATTGTCTCATTTTCTAATAAGTTTACTTTGAGGCGTTGGTGAAACTGCAGGTATGTTGAATTTTATGATGCAATGTCTGTGCCCATGGCTATCGCCCTCTCTGGTCAACTACTTCTTGGCCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCAGGCGCCTCTGGTGCAGGGCCATATGGTGCAGTAGACAGGAAACTTTATGTTGGAAATTTACATTTCAACATGACTGAGACTCACCTTAGAGAGGTATTAAGGCCAACTAATCTATACAGTTTTATCTCAAGCCATTCACATTTGATTCCTCTCATATGGAGTTATTTTCTATACAAGTGAAAAATGTAGACCGTCATTGAACAAGAAACAATTTTATGCGCCAATATCAATTACGAAAGTATATGCAGTGAATATGGTTTTACTGTTGTAAAATTATAGTTAATGGATAATTGATGCCTTGTCTTTGGATTCAGAGTTGGTTTCTTCAATTTTAAATAATTATACCATAATATTTTTTTGATTATCACTTCTTTTTCTGATTAGATTTTTGAAGCATTTGGTCCTGTGGAACTTGTGCAACTACCTCTTGACCTTGAGTCTGGTCACTGCAAGGGTTTTGGATTTGTTCAAGTGGGTAGTTTATTTATGATCAACTTTTGCAAGCTTTTGATATGATATGCATCATAATTATCTGTATTAATTTTTGAGTCGTTTCCAGTTTGCTCATCTGGAACATGCTAAGTCAGCTCAAAGCTTGAATGGAAAATTAGAACTTGCTGGCCGAACCATCAAGGTTGTCTTCTACTAGAACCTTTAAGATTTTGATTTGTGTCTAGTACTTGTATCTGTTTGTTATTACTTATTATCACGTCTCTCGAAAATGATGACATTCTTGGTTTTGGGCATTTAAAAATAATACTGTTTGTGCAGGTTTCATCTGTAACAGATCATATTGGAGCACAAGAGAGTGTTGCGAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGTTGGTGTATAATTTTCCTATATTATTAGGAAATAAATAACTATCTTGTTATAATTATTTTAGCATGTTTCTCTTCTCGGTTTTCTTATGCTAAGGCTCGAGTTGAGCTACCTTTTATTGATCGCTTAATCAATTGGACTTTTGCTTCAAATATCACCCAAGAACTTAGCTTTTACTATAGCTGATGTTTACAATAATTTAATGTGCCAGTCTGTCTCATGAATGATGATCATGTGTTTAAGTTTATTTTTCTTGATAAAATGACATAGAAAGTTGTGATTTCAATACATATCTGTGCTTTCAATTATGGCATGTGTGAGATTAGGTGAGTCTCTCTTGCCTGAGCACTCACCATGAGCGTGTGTTCATGGCAACATATGCAATTGCCTGTGGTTGGCCCCTCTTTAAATGAGTTGTGGGAGTAGTTAGGCGACCTTTATGGGATATATCAGGGTGCTGAGGCTATGTGGGGTGATTTCAACTTGGTTAGAAGTCCAAGGAGAAATTCTCAAGAGGAAACACAGCAAAAAGTATGTTATAATTTGACTTTTTTTTGATTAATGATCTCTCTTCATTTGATGTCTCAATGATAATGGAAGACATGCATGGCCAAATGAGGTTGAACCTTCTCCTTATAAAGATGGATTCTTAGCTACTGAAGATTGGATGGAGTCTTTTAGAAAATCCAGAGTTGGAGGCTACACACATTGAGTCCAGAGTTGGCAAAGTATTGAGCCTTTGAATAAGTTTGGAGTGTGTGATATAGAAATAATTGAATAGTTATAGAATTGAACAACATTCTCTAGAAGGCGCATTGGAAAATTGTAGATTCTTGTAGAATTCTTGCACATTCTTGGATTCTTCAGCGTCATGGGCTGACCTTGAAAACTAGAAAGATGGATGACTTCACATGCCAAAAAGTTGGAGAAAATTGAAACTGTTCACCTGTGAAGGAACCGATTGGGTAGCATATTGAATTGACATCCGCAAGTTGTAGATATAACCATGATACATTGATTATTATCTTATTTTCTTGTACCTGATTACGACACATGGAAGGAATACATTGATATTGTCTGTTGATGACACACGTTGGTGTCACTAAGGGAGAATGATTCTTCCCTTGGGGTTGACCACCCCGAGTTTTTCCAGACATATTGATTGCAAATTTCTGACACTTTGCTTAAGATTCTTCTTCCTCTCACATACATAGAGGAAAAAGGAGGATAAAAGAAAAGAAAATGAGACATATTGGTTGTGTCATATCATTCACTTGAGGACTGTTGAACTATGCTGGTTGCTACTTTTTGGTCACTCCTTAGCTATAGCTTTTGTATACTTCATATCATTCAATAAAATATTTGTTTATTATCAGAAAAAAACGTCTGCTAATTGTATTGTCAAATTGCAGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCAACTAGGTTTGTCTCCCTTTGGTGTGATTAAATTGGCAGATGTGTTATCTTCCCTCTTTTCTACTGCCATCTTTTTAAATGGACTTTTGTTTCCTTAAGCAAGCGAGATCAGATCAATGTGAGTTAACTGCTGCATGGTTATTGCTTCATGGTTTCAGTATTGCAGGGTCTCTTGGAGCACCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTTCCAGCTTGCCTCTAAATGGTCAAGCTGCAGTAGCTGCACCAGCAGTACTTCCAGCTAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGCCCTAGTGAATGTCTACTACTGAAAAATATGTTTGATCCATCGACGGAGGTACTGGATACCTGTATTTCTGTTCTCATCTTTCAAGGTGGATTATTTATAAGATAAGTTATGTTGCAGACGGCACCGGACTTTGACATGGAAATCAAAGAAGACGTTGAAGAGGAGTGTTCCAAATATGGTCGCGTTAAACATATATATGTGGATAAGTGAGTACTTTCTTTTCCTTGGTCCCCATAATAAATCATATAAGCCATTTCAGGTCATATTGTCAAGTGATTTTTTTTAAAGATTTTTTTGGTTAAAATTTATATTTCTGCTTTCTTTTCAAGTCTTAGTCATACTTATGGCTATAACGTACAGGATGTTGTCTCCTGTTGACGTCTTTCTCAAATATGTTTCACTCCGTGTTGGGGCATTGACTTGGATCTTTGATCCTCATTTGCAGATACTTCCGGAATAGGGATGGAAAAAAATTACTAACTCCTTCGTGGCTCCATGGATGGGAGATTCTTGTTTTTTTTTTTTTTTTGGTCCCCACTTTTATTTTAGGACGGTTACAGAAAGGAATTCCCTACCCTAACACTAGCCCTGAATTATTTTAGCAATATTATAAATTAATAACTATACTTGACTGACAACCTTTTCCATTTATGTGTGCAAATTAATTATTACTTTTGGGACTCTTGCTTTCTGCTGCCCCCGGGTGACCTTTGGGCCCCTTTTTAGTAATTTACCTCTTGTTCTTTCGTTATTCTGAAATCTGTATTAAAAGCAATTTCTGAATCTATGATAAGGATAATGACGATAGTAAACCTTACATGTCTCGTTTAATCTCTAATTACACAAAACCGTTGGAAGGTTTTCAACATCCAATGAGCATAGCCAAAACCATAGTGCCATTTCATTTTCCTATTTTCTTATAGGTAAGGGTAATGTTAACTCCATCTTATATCCGAGGATGAAACTTCAAAATTTGCATTATTATTATGTGATTCAATAGATGTTTATTTATGTAGAATTTGCCACTTTCTTCATCGTTTTCCAATTACTTTGCTCTGTGCAGAAATAGCGCAGGATGTGTGTATCTGCAATATGATGCTGTGGAAGCTGCTATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCGGGCAGACAGATATCAGTCTTGTTCATGGTCTGTTATTTAACTTTTTATCCCTTTAGAAAGTCT

mRNA sequence

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCTGTGGAGGACCAGGACAATAGGGACTCCAAGAAGGCGAAGAAGAATGAGAGTGAGAGGAATGAGAAAAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGATGGTTCCGGTGGCCGCGAGGATGAGGAGGTGAAGGTCAAGAGGTCGAGAAGCGAGCATGAAAATGGGAAGGAGGACAGGGATCAGTCGGGCCGAGGGAGGGATCGGCATCGGAGAGATAGAGAGGAAGAAACAGATGCGGGAAAAGAGAGGAACCGTACGAGAGAGAGGGGTAGCAGTGAGAAGGAGAGGGATAGAGACAGGAACAGAGAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAGGGACAGAAGGGATAAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGACAAGGATAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAGAGAAAGGAGAGATAGGGAGAGGAGGGAGCGGGAAAGAGAAGAGGAGAGATCGCGGCGAAGCAGGAGTCGGTCTGTTCGGGAGCGAGAACGTGAAGTTGATGTCAGAGAGAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCTGATCCAGAGAGGGATCAAAGAACTGTATTTGCTTATCAGATGCCTTTGAAGGCCACTGAGAGAGATGTTTACGAATTCTTTTCAAAAGCAGGAAAGGTGAGAGATGTACGGCTGATTATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCAATGTCTGTGCCCATGGCTATCGCCCTCTCTGGTCAACTACTTCTTGGCCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCAGGCGCCTCTGGTGCAGGGCCATATGGTGCAGTAGACAGGAAACTTTATGTTGGAAATTTACATTTCAACATGACTGAGACTCACCTTAGAGAGATTTTTGAAGCATTTGGTCCTGTGGAACTTGTGCAACTACCTCTTGACCTTGAGTCTGGTCACTGCAAGGGTTTTGGATTTGTTCAATTTGCTCATCTGGAACATGCTAAGTCAGCTCAAAGCTTGAATGGAAAATTAGAACTTGCTGGCCGAACCATCAAGGTTGTTTCATCTGTAACAGATCATATTGGAGCACAAGAGAGTGTTGCGAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCAACTAGTATTGCAGGGTCTCTTGGAGCACCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTTCCAGCTTGCCTCTAAATGGTCAAGCTGCAGTAGCTGCACCAGCAGTACTTCCAGCTAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGCCCTAGTGAATGTCTACTACTGAAAAATATGTTTGATCCATCGACGGAGACGGCACCGGACTTTGACATGGAAATCAAAGAAGACGTTGAAGAGGAGTGTTCCAAATATGGTCGCGTTAAACATATATATGTGGATAAAAATAGCGCAGGATGTGTGTATCTGCAATATGATGCTGTGGAAGCTGCTATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCGGGCAGACAGATATCAGTCTTGTTCATGGTCTGTTATTTAACTTTTTATCCCTTTAGAAAGTCT

Coding sequence (CDS)

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCTGTGGAGGACCAGGACAATAGGGACTCCAAGAAGGCGAAGAAGAATGAGAGTGAGAGGAATGAGAAAAGCAGCAGAAAGAGAGAGGTAGACGAGGAAGATGGTTCCGGTGGCCGCGAGGATGAGGAGGTGAAGGTCAAGAGGTCGAGAAGCGAGCATGAAAATGGGAAGGAGGACAGGGATCAGTCGGGCCGAGGGAGGGATCGGCATCGGAGAGATAGAGAGGAAGAAACAGATGCGGGAAAAGAGAGGAACCGTACGAGAGAGAGGGGTAGCAGTGAGAAGGAGAGGGATAGAGACAGGAACAGAGAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAGGGACAGAAGGGATAAGGATAGAGATAGAGAGAGACACAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGACAAGGATAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAGAGAAAGGAGAGATAGGGAGAGGAGGGAGCGGGAAAGAGAAGAGGAGAGATCGCGGCGAAGCAGGAGTCGGTCTGTTCGGGAGCGAGAACGTGAAGTTGATGTCAGAGAGAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCTGATCCAGAGAGGGATCAAAGAACTGTATTTGCTTATCAGATGCCTTTGAAGGCCACTGAGAGAGATGTTTACGAATTCTTTTCAAAAGCAGGAAAGGTGAGAGATGTACGGCTGATTATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCAATGTCTGTGCCCATGGCTATCGCCCTCTCTGGTCAACTACTTCTTGGCCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCAGGCGCCTCTGGTGCAGGGCCATATGGTGCAGTAGACAGGAAACTTTATGTTGGAAATTTACATTTCAACATGACTGAGACTCACCTTAGAGAGATTTTTGAAGCATTTGGTCCTGTGGAACTTGTGCAACTACCTCTTGACCTTGAGTCTGGTCACTGCAAGGGTTTTGGATTTGTTCAATTTGCTCATCTGGAACATGCTAAGTCAGCTCAAAGCTTGAATGGAAAATTAGAACTTGCTGGCCGAACCATCAAGGTTGTTTCATCTGTAACAGATCATATTGGAGCACAAGAGAGTGTTGCGAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCAACTAGTATTGCAGGGTCTCTTGGAGCACCAGTGTTGAATGGGTCAGCCCCAAATCAGAGATCTTCCAGCTTGCCTCTAAATGGTCAAGCTGCAGTAGCTGCACCAGCAGTACTTCCAGCTAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGCCCTAGTGAATGTCTACTACTGAAAAATATGTTTGATCCATCGACGGAGACGGCACCGGACTTTGACATGGAAATCAAAGAAGACGTTGAAGAGGAGTGTTCCAAATATGGTCGCGTTAAACATATATATGTGGATAAAAATAGCGCAGGATGTGTGTATCTGCAATATGATGCTGTGGAAGCTGCTATAAATGCTCAACGTGCAATGCACCTGAGATGGTTTGCGGGCAGACAGATATCAGTCTTGTTCATGGTCTGTTATTTAACTTTTTATCCCTTTAGAAAGTCT

Protein sequence

MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRSRSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFMVCYLTFYPFRKS

Homology

[Close]

BLAST of MS011321 vs. NCBI nr
Match: XP_022133416.1 (RNA-binding protein 39 isoform X2 [Momordica charantia])

HSP 1 Score: 1030.8 bits (2664), Expect = 4.8e-297
Identity = 591/592 (99.83%), Postives = 591/592 (99.83%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
           RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE
Sbjct: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR
Sbjct: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360
           LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQE 420
           VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK VSSVTDHIGAQE
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK-VSSVTDHIGAQE 420

Query: 421 SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL 480
           SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL
Sbjct: 421 SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL 480

Query: 481 PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE 540
           PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE
Sbjct: 481 PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE 540

Query: 541 CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 591

[Close]

BLAST of MS011321 vs. NCBI nr
Match: XP_022133415.1 (RNA-binding protein 39 isoform X1 [Momordica charantia])

HSP 1 Score: 1025.8 bits (2651), Expect = 1.5e-295
Identity = 591/594 (99.49%), Postives = 591/594 (99.49%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
           RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE
Sbjct: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR
Sbjct: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360
           LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQE 420
           VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK VSSVTDHIGAQE
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK-VSSVTDHIGAQE 420

Query: 421 SVAKSNDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS 480
           SVAKSNDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS
Sbjct: 421 SVAKSNDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS 480

Query: 481 SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE 540
           SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE
Sbjct: 481 SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE 540

Query: 541 EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593

[Close]

BLAST of MS011321 vs. NCBI nr
Match: XP_038881757.1 (RNA-binding protein 39 isoform X2 [Benincasa hispida])

HSP 1 Score: 961.4 bits (2484), Expect = 3.5e-276
Identity = 554/596 (92.95%), Postives = 573/596 (96.14%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK KK+ESERNEKSSRKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKKSESERNEKSSRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGK----ERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKED+D SGRGRDRHRRDREEE D GK    ERNRTRERGSSEKERDRDR+RE+
Sbjct: 61  RSEHENGKEDKDHSGRGRDRHRRDREEEADGGKERDRERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DRRDKDRDRERHKEK+RERDKDRRD++R          E+EKEKE
Sbjct: 121 RDRDRHKEKERERDKDRRDKDRDRERHKEKDRERDKDRRDRDR----------EREKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERR+RE+REREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT
Sbjct: 181 RERREREKREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480
           GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR
Sbjct: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480

Query: 481 SSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540
           S+SLPLNGQ AVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED
Sbjct: 481 STSLPLNGQVAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540

Query: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           VEEECSKYGRVKHIYVDKNSAGCVYLQYD VEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM 584

[Close]

BLAST of MS011321 vs. NCBI nr
Match: XP_008440993.1 (PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo])

HSP 1 Score: 957.2 bits (2473), Expect = 6.7e-275
Identity = 552/596 (92.62%), Postives = 573/596 (96.14%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK K++ESERNEKS+RKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAG----KERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKEDRD SGR RDRHRRDREEETD G    KERNRTRERGSSEKERDRDR+RE+
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DR+DK+RDRERHKEK+RERDKDRRD        KEKE+E+EKEKE
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRD--------KEKEREREKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERRDRERREREREEERSRRSRSRSVREREREVDVRE+RRMKEKKD  EPEADPERDQRT
Sbjct: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480
           GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR
Sbjct: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480

Query: 481 SSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540
           S+SLPLNGQAAVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED
Sbjct: 481 STSLPLNGQAAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540

Query: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           VEEECSKYG VKHIYVDKNSAGCVYLQYD VEAA+NAQRAMHLRWFAGRQISVLFM
Sbjct: 541 VEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM 586

[Close]

BLAST of MS011321 vs. NCBI nr
Match: XP_004141977.1 (RNA-binding protein 39 isoform X3 [Cucumis sativus] >KGN48400.1 hypothetical protein Csa_003011 [Cucumis sativus])

HSP 1 Score: 955.7 bits (2469), Expect = 1.9e-274
Identity = 551/596 (92.45%), Postives = 574/596 (96.31%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK K+++SERNEKS+RKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSDSERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAG----KERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKEDRD SGR RDRHRRDREEETD G    KERNRTRERGSSEKER+RDR+RE+
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERERDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DR+DK+RDRERHKEK+RERDKDRRDKER        E+EKEKEKE
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKER--------EREKEKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERRDRERREREREEERSRRSRSRSVREREREVDVRE+RRMKEKKD  EPEADPERDQRT
Sbjct: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTTEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480
           GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR
Sbjct: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480

Query: 481 SSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540
           S+SLP+NGQAAVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED
Sbjct: 481 STSLPVNGQAAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540

Query: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           VEEECSKYGRVKHIYVDKNSAGCVYLQYD VEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM 586

[Close]

BLAST of MS011321 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-55
Identity = 210/518 (40.54%), Postives = 284/518 (54.83%), Query Frame = 0


Query: 105 EKERDRDRNREDRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKE 164
           E +       E+R ++R K K R R  +R+       R K KER+R    RD+ER K K 
Sbjct: 19  ENKLSSANGHEERSKKRKKSKSRSRSHERK-------RSKSKERKRS---RDRERKKSKS 78

Query: 165 KEKEKEKEKEKERER-RDRERREREREEE-----------RSRRSRSRSV-----RERER 224
           +E+++ + KE+ R R R R+RR R R              R +     S+     R R +
Sbjct: 79  RERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSK 138

Query: 225 EVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 284
               ++   ++E  D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I
Sbjct: 139 SPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 198

Query: 285 MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSGAS 344
            DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +N     
Sbjct: 199 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 258

Query: 345 GAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAH 404
            AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+GF+ F+ 
Sbjct: 259 SAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 318

Query: 405 LEHAKSA-QSLNGKLELAGRTIKVVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRA 464
            E AK A + LNG  ELAGR +K V  VT+   A  S +   D D+ E  G+ L    R 
Sbjct: 319 SECAKKALEQLNG-FELAGRPMK-VGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRL 378

Query: 465 LLMQKL-DRTGI--------ATSIAGSLGAPVLNGSAPNQRSSSLPLNGQAAVAAPAVLP 524
            LM +L + TG+        A  ++GSL        A  Q   S      A  AA +V P
Sbjct: 379 QLMARLAEGTGLQIPPAAQQALQMSGSL---AFGAVADLQTRLSQQTEASALAAAASVQP 438

Query: 525 ANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKN 584
                         ++C  L NMF+P TE    +D EIK+DV EEC+K+G V HIYVDKN
Sbjct: 439 L------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN 498

Query: 585 SA-GCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           SA G VY++  ++ AAI A  A+H RWFAG+ I+  ++
Sbjct: 499 SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 500

[Close]

BLAST of MS011321 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 3.2e-54
Identity = 209/521 (40.12%), Postives = 285/521 (54.70%), Query Frame = 0


Query: 105 EKERDRDRNREDRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKE 164
           E + +     E+R ++R K K R R  +R+       R K KER+R    RD+ER K K 
Sbjct: 19  ENKLNSANGHEERSKKRKKSKSRSRSHERK-------RSKSKERKRS---RDRERKKSKS 78

Query: 165 KEKEKEKEKEKERER-RDRERREREREEE-----------RSRRSRSRSV-----RERER 224
           +E+++ + KE+ R R R R+RR R R              R +     S+     R R +
Sbjct: 79  RERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSK 138

Query: 225 EVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 284
               ++   ++E  D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I
Sbjct: 139 SPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 198

Query: 285 MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSGAS 344
            DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +N     
Sbjct: 199 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 258

Query: 345 GAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAH 404
            AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+GF+ F+ 
Sbjct: 259 SAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 318

Query: 405 LEHAKSA-QSLNGKLELAGRTIKVVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRA 464
            E AK A + LNG  ELAGR +K V  VT+   A  S +   D D+ E  G+ L    R 
Sbjct: 319 SECAKKALEQLNG-FELAGRPMK-VGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRL 378

Query: 465 LLMQKL-DRTGI--------ATSIAGSL---GAPVLNGSAPNQRSSSLPLNGQAAVAAPA 524
            LM +L + TG+        A  ++GSL        +     Q   S      A  AA +
Sbjct: 379 QLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAAS 438

Query: 525 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYV 584
           V P              ++C  L NMF+P TE    +D EIK+DV EEC+K+G V HIYV
Sbjct: 439 VQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV 498

Query: 585 DKNSA-GCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           DKNSA G VY++  ++ AAI A  A+H RWFAG+ I+  ++
Sbjct: 499 DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506

[Close]

BLAST of MS011321 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 4.2e-54
Identity = 209/521 (40.12%), Postives = 284/521 (54.51%), Query Frame = 0


Query: 105 EKERDRDRNREDRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKE 164
           E +       E+R ++R K K R R  +R+       R K KER+R    RD+ER K K 
Sbjct: 19  ENKLSSANGHEERSKKRKKSKSRSRSHERK-------RSKSKERKRS---RDRERKKSKS 78

Query: 165 KEKEKEKEKEKERER-RDRERREREREEE-----------RSRRSRSRSV-----RERER 224
           +E+++ + KE+ R R R R+RR R R              R +     S+     R R +
Sbjct: 79  RERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSK 138

Query: 225 EVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 284
               ++   ++E  D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I
Sbjct: 139 SPFRKDKSPVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 198

Query: 285 MDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSGAS 344
            DRNSRRSKG+ YVEF D  SVP+AI L+GQ +LG P++V+ S+AEKN     +N     
Sbjct: 199 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 258

Query: 345 GAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAH 404
            AGP      +LYVG+LHFN+TE  LR IFE FG +E +QL +D E+G  KG+GF+ F+ 
Sbjct: 259 SAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 318

Query: 405 LEHAKSA-QSLNGKLELAGRTIKVVSSVTDHIGAQESVAKSNDLDDDEGGGLALNAQSRA 464
            E AK A + LNG  ELAGR +K V  VT+   A  S +   D D+ E  G+ L    R 
Sbjct: 319 SECAKKALEQLNG-FELAGRPMK-VGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRL 378

Query: 465 LLMQKL-DRTGI--------ATSIAGSL---GAPVLNGSAPNQRSSSLPLNGQAAVAAPA 524
            LM +L + TG+        A  ++GSL        +     Q   S      A  AA +
Sbjct: 379 QLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAAS 438

Query: 525 VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYV 584
           V P              ++C  L NMF+P TE    +D EIK+DV EEC+K+G V HIYV
Sbjct: 439 VQPL------------ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV 498

Query: 585 DKNSA-GCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           DKNSA G VY++  ++ AAI A  A+H RWFAG+ I+  ++
Sbjct: 499 DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506

[Close]

BLAST of MS011321 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-34
Identity = 156/482 (32.37%), Postives = 244/482 (50.62%), Query Frame = 0


Query: 137 DRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERRDRERREREREEERSRR 196
           D  + R   + R+RD+  R         + + +  +  +      R  R R R EERS  
Sbjct: 138 DSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERS-- 197

Query: 197 SRSRSVREREREVDVRENRRMKEKK-------DMVEPEADPERDQRTVFAYQMPLKATER 256
           SRS    + + E D+R++ R  E+K       +     ++ ERD+RTVF  Q+  + T R
Sbjct: 198 SRSSRAHDYDYE-DLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSR 257

Query: 257 DVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKP 316
           ++Y+FF +AG VRD +++ D+ S RSKGV YVEF    SV  AIALSG+ LLG PV+V+ 
Sbjct: 258 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQL 317

Query: 317 SEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLD 376
           +EAEKN      +  + A        +L V N+HFN+T+  ++ IFE FG +E V L  D
Sbjct: 318 TEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 377

Query: 377 LESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQESVAKSNDLD 436
            +    KGFG++Q+ +   A++A       +LAGR ++V     D    + + +     D
Sbjct: 378 -DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLG-NDKFTTETTSSMLKRFD 437

Query: 437 DDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVL---NGSAPNQRSSSL-PLNGQ 496
           +       L  Q R+   Q+   +    S      AP+      S P  R   +  L   
Sbjct: 438 E------TLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARS 497

Query: 497 AAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEEC-SKY 556
             ++  + L +   PP+       S C LL+NMF+P+ ET+P++  E+++DV+EEC  KY
Sbjct: 498 EDISDNSKLVSEPEPPI------RSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKY 557

Query: 557 GRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQI--SVLFMVCYLTFYPFR 605
           G+V HI V  N  G ++++++  + A  A   +H RWF GR I  S+L    Y   +P  
Sbjct: 558 GKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNA 602

[Close]

BLAST of MS011321 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-27
Identity = 161/466 (34.55%), Postives = 233/466 (50.00%), Query Frame = 0


Query: 68  KEDRDQSGR---GRDRHRRDREEETDAGKERNRTRERG-SSEKERDRDRNREDRDRERHK 127
           K++ D+  R    +D         +++G E + +   G +S+K+R R  N   + R+R +
Sbjct: 19  KKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHN---KSRDRKR 78

Query: 128 EKERERDRDRRDKDRDRERHKE-KERERDKDRRDKERDKDKEKEKEKEKEKEKERERRDR 187
            + R+RDR RR   R R   ++ + R R  DRR                      E R R
Sbjct: 79  SRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGS-------------------ESRSR 138

Query: 188 ERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 247
           + R  +R   RS    +       +    RE   ++E  D + PE   ERD RTVF  Q+
Sbjct: 139 DHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPE---ERDARTVFCMQL 198

Query: 248 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLG 307
             +   RD+ +FFS  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+AI L+GQ LLG
Sbjct: 199 AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 258

Query: 308 QPVMVKPSEAEKN--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 367
            P++V+ S+AEKN     +N       GP      +LYVG+LHFN+TE  LR IFE FG 
Sbjct: 259 VPIIVQASQAEKNRLAAMANNLQKGNGGP-----MRLYVGSLHFNITEDMLRGIFEPFGK 318

Query: 368 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSA-QSLNGKLELAGRTIKVVSSVTDHI-GA 427
           ++ + L  D ++G  KG+GF+ F+  E A+ A + LNG  ELAGR ++ V  VT+ + G 
Sbjct: 319 IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMR-VGHVTERLDGG 378

Query: 428 QESVAKSNDLDDDEGGGLALNAQSRALLMQKL-DRTGIATSIAGSLGAPVLNGSAPNQRS 487
            +      D + D G     +A  R  LM KL +  GI      +  A     +A  Q +
Sbjct: 379 TDITFPDGDQELDLG-----SAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLN 438

Query: 488 SSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPST 524
            ++PL      A  A+ PA         +   S+C  L ++F P T
Sbjct: 439 GAVPLGALNPAALTALSPA---------LNLASQCFQLSSLFTPQT 438

[Close]

BLAST of MS011321 vs. ExPASy TrEMBL
Match: A0A6J1BV17 (RNA-binding protein 39 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005988 PE=4 SV=1)

HSP 1 Score: 1030.8 bits (2664), Expect = 2.3e-297
Identity = 591/592 (99.83%), Postives = 591/592 (99.83%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
           RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE
Sbjct: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR
Sbjct: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360
           LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQE 420
           VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK VSSVTDHIGAQE
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK-VSSVTDHIGAQE 420

Query: 421 SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL 480
           SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL
Sbjct: 421 SVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSSL 480

Query: 481 PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE 540
           PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE
Sbjct: 481 PLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE 540

Query: 541 CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 CSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 591

[Close]

BLAST of MS011321 vs. ExPASy TrEMBL
Match: A0A6J1BV68 (RNA-binding protein 39 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005988 PE=4 SV=1)

HSP 1 Score: 1025.8 bits (2651), Expect = 7.4e-296
Identity = 591/594 (99.49%), Postives = 591/594 (99.49%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
           RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE
Sbjct: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR
Sbjct: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360
           LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHIGAQE 420
           VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK VSSVTDHIGAQE
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIK-VSSVTDHIGAQE 420

Query: 421 SVAKSNDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS 480
           SVAKSNDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS
Sbjct: 421 SVAKSNDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSS 480

Query: 481 SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE 540
           SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE
Sbjct: 481 SLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE 540

Query: 541 EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593

[Close]

BLAST of MS011321 vs. ExPASy TrEMBL
Match: A0A1S3B2E3 (RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 3.2e-275
Identity = 552/596 (92.62%), Postives = 573/596 (96.14%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK K++ESERNEKS+RKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAG----KERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKEDRD SGR RDRHRRDREEETD G    KERNRTRERGSSEKERDRDR+RE+
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DR+DK+RDRERHKEK+RERDKDRRD        KEKE+E+EKEKE
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRD--------KEKEREREKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERRDRERREREREEERSRRSRSRSVREREREVDVRE+RRMKEKKD  EPEADPERDQRT
Sbjct: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480
           GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR
Sbjct: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480

Query: 481 SSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540
           S+SLPLNGQAAVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED
Sbjct: 481 STSLPLNGQAAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540

Query: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           VEEECSKYG VKHIYVDKNSAGCVYLQYD VEAA+NAQRAMHLRWFAGRQISVLFM
Sbjct: 541 VEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM 586

[Close]

BLAST of MS011321 vs. ExPASy TrEMBL
Match: A0A0A0KFB3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1)

HSP 1 Score: 955.7 bits (2469), Expect = 9.4e-275
Identity = 551/596 (92.45%), Postives = 574/596 (96.31%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK K+++SERNEKS+RKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSDSERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAG----KERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKEDRD SGR RDRHRRDREEETD G    KERNRTRERGSSEKER+RDR+RE+
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERERDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DR+DK+RDRERHKEK+RERDKDRRDKER        E+EKEKEKE
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRDKER--------EREKEKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERRDRERREREREEERSRRSRSRSVREREREVDVRE+RRMKEKKD  EPEADPERDQRT
Sbjct: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTTEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNT+GASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTTGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480
           GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR
Sbjct: 421 GAQESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQR 480

Query: 481 SSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540
           S+SLP+NGQAAVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED
Sbjct: 481 STSLPVNGQAAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKED 540

Query: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           VEEECSKYGRVKHIYVDKNSAGCVYLQYD VEAAINAQRAMHLRWFAGRQISVLFM
Sbjct: 541 VEEECSKYGRVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFM 586

[Close]

BLAST of MS011321 vs. ExPASy TrEMBL
Match: A0A1S3B1Y4 (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 952.2 bits (2460), Expect = 1.0e-273
Identity = 552/598 (92.31%), Postives = 573/598 (95.82%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEYDYLEKAVE+QD+R++KK K++ESERNEKS+RKREVDEE GSGGREDEEVKVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAG----KERNRTRERGSSEKERDRDRNRED 120
           RSEHENGKEDRD SGR RDRHRRDREEETD G    KERNRTRERGSSEKERDRDR+RE+
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKE 180
           RDR+RHKEKERERD+DR+DK+RDRERHKEK+RERDKDRRD        KEKE+E+EKEKE
Sbjct: 121 RDRDRHKEKERERDKDRKDKERDRERHKEKDRERDKDRRD--------KEKEREREKEKE 180

Query: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRT 240
           RERRDRERREREREEERSRRSRSRSVREREREVDVRE+RRMKEKKD  EPEADPERDQRT
Sbjct: 181 RERRDRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRT 240

Query: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300
           VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS
Sbjct: 241 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALS 300

Query: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE
Sbjct: 301 GQLLLGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAK+AQSLNGKLE+AGRTIK VSSVTDHI
Sbjct: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIK-VSSVTDHI 420

Query: 421 GAQESVAKSNDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPN 480
           GAQESVAKSNDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPN
Sbjct: 421 GAQESVAKSNDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPN 480

Query: 481 QRSSSLPLNGQAAVAAPAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIK 540
           QRS+SLPLNGQAAVAAP VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIK
Sbjct: 481 QRSTSLPLNGQAAVAAP-VLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIK 540

Query: 541 EDVEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           EDVEEECSKYG VKHIYVDKNSAGCVYLQYD VEAA+NAQRAMHLRWFAGRQISVLFM
Sbjct: 541 EDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAVNAQRAMHLRWFAGRQISVLFM 588

[Close]

BLAST of MS011321 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 531.2 bits (1367), Expect = 1.1e-150
Identity = 356/594 (59.93%), Postives = 417/594 (70.20%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           M+FDEY+YLEK VE+     +KK +++ +ER+E+S RKRE  E  G  G E+E V    S
Sbjct: 1   MEFDEYEYLEKTVEEGAG-SNKKKEESGNERSERSYRKREGGERQGEEGGEEERVS---S 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
           RS+                             K R    E G  +++R+R+R+R  RD++
Sbjct: 61  RSK-----------------------------KSRGDGEENGGGKRDRERERHRSSRDKD 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           R ++K RE     RDK+ DRER     +ERD+  RDK RD                RERR
Sbjct: 121 RERDKVRE---GSRDKESDRER---SSKERDRSDRDKPRD----------------RERR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           +RE+    R   RSRR       E+E EV  R +RR ++KKD  EPEADPERDQRTVFAY
Sbjct: 181 EREK----RSSSRSRR------EEKEPEVVERGSRRHRDKKD--EPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGY+EFYD MSVPMAIALSGQL 
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLF 300

Query: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360
           LGQPVMVKPSEAEKNL QSN++   G GP    DRKLYVGNLHFNM+E  LR+IFEAFGP
Sbjct: 301 LGQPVMVKPSEAEKNLAQSNSTTVGGTGP---ADRKLYVGNLHFNMSELQLRQIFEAFGP 360

Query: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQ-SLNGKLELAGRTIKVVSSVTDHIGAQ 420
           VELVQLPLD E+G CKGFGF+QF  LEH+K+AQ +LNGKLE+AGRTIK VSSV+DHIG Q
Sbjct: 361 VELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK-VSSVSDHIGTQ 420

Query: 421 ESVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSSS 480
           +S  KS D DDD+GGGLALNAQSRA+LMQKLDR+GIATSI GSLG P LNG+A NQ    
Sbjct: 421 DSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQ---- 480

Query: 481 LPLNGQAAVAAPAVLPANFTPP-VLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVE 540
               G       +VLP    P  V + VG PSECLLLKNMFDP+TET P+FD+EI++DV 
Sbjct: 481 ---PGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVA 516

Query: 541 EECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAGRQISVLFM 593
           +ECSKYG V HIYVDKNSAG VYL++ +VEAA  AQRAMH+RWFA + IS  FM
Sbjct: 541 DECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFM 516

[Close]

BLAST of MS011321 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 452.2 bits (1162), Expect = 6.5e-127
Identity = 331/608 (54.44%), Postives = 406/608 (66.78%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVKVKRS 60
           MDFDEY+YLEK VE+                         ++ E G+GG  DE+VK    
Sbjct: 1   MDFDEYEYLEKTVENP-----------------------HLENEVGNGG-GDEKVK---- 60

Query: 61  RSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNREDRDRE 120
                 GKE R +S     RHR D+++E D  ++  R++   S  + R R     DR+R+
Sbjct: 61  ----SEGKE-RSRS----SRHRGDKKKERDEDEDGRRSKRSRSHHRSRSR-----DRERD 120

Query: 121 RHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEKERERR 180
           RH+     RDRD R+KD D+E    K+RERD   RDK+RD        K ++ EK+R RR
Sbjct: 121 RHRSSREHRDRD-REKDVDKEERNGKDRERD---RDKDRD-------SKGRDHEKDRSRR 180

Query: 181 DRERREREREEERSRRSRSRSVREREREVDVRENRRMKEKK-DMVEPEADPERDQRTVFA 240
            R R ER R +ER  +S     +ERE +   R+ RR K+KK D VEPEADPERDQRTVFA
Sbjct: 181 SRSRSERHRSQER-EKSLEIEPKERETKDRDRDRRRHKDKKEDKVEPEADPERDQRTVFA 240

Query: 241 YQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQL 300
           YQ+ L+ATERDVYEFFS+AGKVRDVR+IMDR SRRS+G+GYVEFYD MSVPMAIALSGQ 
Sbjct: 241 YQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQP 300

Query: 301 LLGQPVMVKPSEAEKNLVQSNT--SGASG-AGPYGAVDRKLYVGNLHFNMTETHLREIFE 360
           LLGQPVMVKPSEAEKNLVQS T  +GA G  GPY    R+LYVGNLH NM+E  LR++FE
Sbjct: 301 LLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFE 360

Query: 361 AFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLNGKLELAGRTIKVVSSVTDHI 420
           +FG VELVQ+P D E+G CKGFGFVQFA LE A++A +LNG+LE+AGR IK VS+VTD  
Sbjct: 361 SFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIK-VSAVTDQT 420

Query: 421 GAQES--VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPN 480
              E+     + DLDDD+GGGL+LNAQSRALLMQKLDR+G A+S  G   A   NG    
Sbjct: 421 EVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASS-TGLTTAASFNGGVST 480

Query: 481 QRSSSLPLNGQAAVAA----------PAVLPANFTPPVLQSVGSPSECLLLKNMFDPSTE 540
             S + P   Q +  A          P V+PA F P     +G PSECLLLKNMFDPSTE
Sbjct: 481 ISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDP-----IGVPSECLLLKNMFDPSTE 540

Query: 541 TAPDFDMEIKEDVEEECSKYGRVKHIYVDKNSAGCVYLQYDAVEAAINAQRAMHLRWFAG 593
           T  DFD +IKEDV+EECSK+G++ HI+VDKNS G VYL+++  +AAI AQRA+H RWFAG
Sbjct: 541 TEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 546

[Close]

BLAST of MS011321 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 421.8 bits (1083), Expect = 9.4e-118
Identity = 327/628 (52.07%), Postives = 409/628 (65.13%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDNRDSKKAKKNESERNEKSSRKREVDEEDGSGGREDEEVK---V 60
           MDFDEY+YLEK VE+                         ++ E G+GG  DE+VK    
Sbjct: 1   MDFDEYEYLEKTVENP-----------------------HLENEVGNGG-GDEKVKSEGK 60

Query: 61  KRSRSEHENG--KEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDRDRNRE 120
           +RSRS    G  K++RD+   GR R +R R       ++R R R R SS + RDRDR + 
Sbjct: 61  ERSRSSRHRGDKKKERDEDEDGR-RSKRSRSHHRSRSRDRERDRHR-SSREHRDRDREK- 120

Query: 121 DRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERDKDKEKEKEKEKEKEK 180
           D D+E    K+RERD   RDKDRD    K ++ E+D+ RR + R    E+ + +E+EK  
Sbjct: 121 DVDKEERNGKDRERD---RDKDRD---SKGRDHEKDRSRRSRSR---SERHRSQEREKSL 180

Query: 181 ERERRDRERREREREEERSRRSRSRSVR---EREREVDVRE----NRRMKEKKDMVEPEA 240
           E E ++RE ++R+R+           V    + +  +  R+     R   +K+D VEPEA
Sbjct: 181 EIEPKERETKDRDRDRRFILMLLGPLVLPSVQLDGALPCRDFSCFIRHKDKKEDKVEPEA 240

Query: 241 DPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------VRDVRLIMDRNSRRSKGVG 300
           DPERDQRTVFAYQ+ L+ATERDVYEFFS+AGK         VRDVR+IMDR SRRS+G+G
Sbjct: 241 DPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIG 300

Query: 301 YVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNT--SGASG-AGPYGAVDRK 360
           YVEFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNLVQS T  +GA G  GPY    R+
Sbjct: 301 YVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR 360

Query: 361 LYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSLN 420
           LYVGNLH NM+E  LR++FE+FG VELVQ+P D E+G CKGFGFVQFA LE A++A +LN
Sbjct: 361 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLN 420

Query: 421 GKLELAGRTIKVVSSVTDHIGAQES--VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTG 480
           G+LE+AGR IK VS+VTD     E+     + DLDDD+GGGL+LNAQSRALLMQKLDR+G
Sbjct: 421 GQLEIAGRAIK-VSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSG 480

Query: 481 IATSIAGSLGAPVLNGSAPNQRSSSLPLNGQAAVAA----------PAVLPANFTPPVLQ 540
            A+S  G   A   NG      S + P   Q +  A          P V+PA F P    
Sbjct: 481 TASS-TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDP---- 540

Query: 541 SVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKNSAGCVYLQY 593
            +G PSECLLLKNMFDPSTET  DFD +IKEDV+EECSK+G++ HI+VDKNS G VYL++
Sbjct: 541 -IGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLRF 584

[Close]

BLAST of MS011321 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 414.5 bits (1064), Expect = 1.5e-115
Identity = 321/629 (51.03%), Postives = 404/629 (64.23%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVE------DQDNRDSKKAKKNESERNEKSSR----KREVDEEDGSGGR 60
           MDFDEY+YLEK VE      +  N    +  K+E +   +SSR    K++  +ED  G R
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR 60

Query: 61  EDEEVKVKRSRSEHENGKEDRDQSGRGRDRHRRDREEETDAGKERNRTRERGSSEKERDR 120
                  KRSRS H +   DR++      R  RDR+ E D  KE     ER   ++ERDR
Sbjct: 61  S------KRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKE-----ERNGKDRERDR 120

Query: 121 DRNREDRDRERHKEKERERDRDRRDKDRDRERHKEKERERDKDRRDKERD-KDKEKEKEK 180
           D++R+ + R      + E+DR RR + R  ERH+ +ERE+  +   KER+ KD+++++  
Sbjct: 121 DKDRDSKGR------DHEKDRSRRSRSRS-ERHRSQEREKSLEIEPKERETKDRDRDRRY 180

Query: 181 EKEKEKE-----------RERRDRERREREREEERSRRSRSRSVREREREVDVRENRRMK 240
             E   +                    +     E + R+       R+R  D        
Sbjct: 181 TSELVIDFIIYVHWYCLLYNLMGHVPFKIIIVIEGTSRASCVYAYWRKRHKD-------- 240

Query: 241 EKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 300
           +K+D VEPEADPERDQRTVFAYQ+ L+ATERDVYEFFS+AGKVRDVR+IMDR SRRS+G+
Sbjct: 241 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 300

Query: 301 GYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNT--SGASG-AGPYGAVDR 360
           GYVEFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNLVQS T  +GA G  GPY    R
Sbjct: 301 GYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 360

Query: 361 KLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKSAQSL 420
           +LYVGNLH NM+E  LR++FE+FG VELVQ+P D E+G CKGFGFVQFA LE A++A +L
Sbjct: 361 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNL 420

Query: 421 NGKLELAGRTIKVVSSVTDHIGAQES--VAKSNDLDDDEGGGLALNAQSRALLMQKLDRT 480
           NG+LE+AGR IK VS+VTD     E+     + DLDDD+GGGL+LNAQSRALLMQKLDR+
Sbjct: 421 NGQLEIAGRAIK-VSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRS 480

Query: 481 GIATSIAGSLGAPVLNGSAPNQRSSSLPLNGQAAVAA----------PAVLPANFTPPVL 540
           G A+S  G   A   NG      S + P   Q +  A          P V+PA F P   
Sbjct: 481 GTASS-TGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDP--- 540

Query: 541 QSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKNSAGCVYLQ 593
             +G PSECLLLKNMFDPSTET  DFD +IKEDV+EECSK+G++ HI+VDKNS G VYL+
Sbjct: 541 --IGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLR 595

The following BLAST results are available for this feature:

BLAST of MS011321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133416.1	4.8e-297	99.83	RNA-binding protein 39 isoform X2 [Momordica charantia]	[more]
XP_022133415.1	1.5e-295	99.49	RNA-binding protein 39 isoform X1 [Momordica charantia]	[more]
XP_038881757.1	3.5e-276	92.95	RNA-binding protein 39 isoform X2 [Benincasa hispida]	[more]
XP_008440993.1	6.7e-275	92.62	PREDICTED: RNA-binding protein 39 isoform X4 [Cucumis melo]	[more]
XP_004141977.1	1.9e-274	92.45	RNA-binding protein 39 isoform X3 [Cucumis sativus] >KGN48400.1 hypothetical pro...	[more]

BLAST of MS011321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	2.2e-55	40.54	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q8VH51	3.2e-54	40.12	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
Q14498	4.2e-54	40.12	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
O13845	2.8e-34	32.37	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q86U06	5.7e-27	34.55	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of MS011321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BV17	2.3e-297	99.83	RNA-binding protein 39 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005988...	[more]
A0A6J1BV68	7.4e-296	99.49	RNA-binding protein 39 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005988...	[more]
A0A1S3B2E3	3.2e-275	92.62	RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
A0A0A0KFB3	9.4e-275	92.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486730 PE=4 SV=1	[more]
A0A1S3B1Y4	1.0e-273	92.31	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]

BLAST of MS011321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09880.1	1.1e-150	59.93	Splicing factor, CC1-like	[more]
AT2G16940.1	6.5e-127	54.44	Splicing factor, CC1-like	[more]
AT2G16940.3	9.4e-118	52.07	Splicing factor, CC1-like	[more]
AT2G16940.2	1.5e-115	51.03	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..233
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..114 coord: 103..594
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..114 coord: 103..594
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 236..308 e-value: 3.52556E-45 score: 152.375
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 510..592 e-value: 5.25369E-38 score: 133.439
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 336..409 e-value: 2.5E-23 score: 93.5 coord: 236..308 e-value: 2.6E-17 score: 73.5 coord: 512..590 e-value: 1.2E-4 score: 31.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 242..304 e-value: 3.4E-11 score: 42.8 coord: 337..407 e-value: 4.2E-18 score: 64.9 coord: 534..587 e-value: 1.9E-4 score: 21.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 235..312 score: 15.562085
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 335..413 score: 17.574623
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 428..528 e-value: 3.8E-23 score: 82.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 330..427 e-value: 1.7E-23 score: 84.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 228..322 e-value: 5.5E-22 score: 79.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 507..597 e-value: 8.9E-30 score: 104.9
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 114..593 e-value: 5.4E-168 score: 558.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 334..409
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 508..591
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 229..326

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011321.1	MS011321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding