MS011319 (gene) Bitter gourd (TR) v1

Overview
NameMS011319
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold239: 961627 .. 961995 (+)
RNA-Seq ExpressionMS011319
SyntenyMS011319
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATCGTCGTGTTCGCGAAATATGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGCTGAGCAACGAGGACGACAGTAGTAGCAATGTCGTCACAGCGGAGAAGAAGAATAATAATAAGAAGCGCGGCGGCGGCGACGGCGGCGAGGAGGAGGTTGATCAGAAGAGATGCCAAATCGAAGCCTCAATTTGGTCTAAAATTGAAGAGATTTTCGGGAAAGAAGAAGAAGAATTAGAAGAAGACCGTAATTCGATTTGTCGGCCCAAGAAGAGACGATCGCGATTTCGATCCATTCAAAGTATTTACATGACCACCAAGCCCATCATTAATGCAAGATTCTCCGGCAACAGAATCATC

mRNA sequence

ATGGAAGAAGAATCGTCGTGTTCGCGAAATATGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGCTGAGCAACGAGGACGACAGTAGTAGCAATGTCGTCACAGCGGAGAAGAAGAATAATAATAAGAAGCGCGGCGGCGGCGACGGCGGCGAGGAGGAGGTTGATCAGAAGAGATGCCAAATCGAAGCCTCAATTTGGTCTAAAATTGAAGAGATTTTCGGGAAAGAAGAAGAAGAATTAGAAGAAGACCGTAATTCGATTTGTCGGCCCAAGAAGAGACGATCGCGATTTCGATCCATTCAAAGTATTTACATGACCACCAAGCCCATCATTAATGCAAGATTCTCCGGCAACAGAATCATC

Coding sequence (CDS)

ATGGAAGAAGAATCGTCGTGTTCGCGAAATATGGAGGAGGTATTGGGTGCGGCGCAGCAGTTGATGCAGCTGAGCAACGAGGACGACAGTAGTAGCAATGTCGTCACAGCGGAGAAGAAGAATAATAATAAGAAGCGCGGCGGCGGCGACGGCGGCGAGGAGGAGGTTGATCAGAAGAGATGCCAAATCGAAGCCTCAATTTGGTCTAAAATTGAAGAGATTTTCGGGAAAGAAGAAGAAGAATTAGAAGAAGACCGTAATTCGATTTGTCGGCCCAAGAAGAGACGATCGCGATTTCGATCCATTCAAAGTATTTACATGACCACCAAGCCCATCATTAATGCAAGATTCTCCGGCAACAGAATCATC

Protein sequence

MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKNNNKKRGGGDGGEEEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGNRII
Homology
BLAST of MS011319 vs. NCBI nr
Match: XP_022133223.1 (uncharacterized protein LOC111005872 [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 6.7e-57
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKNNNKKRGGGDGGEEEVDQKR 60
           MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKK NNKKRGGGDGGEEEVDQKR
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNKKRGGGDGGEEEVDQKR 60

Query: 61  CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN 120
           CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN
Sbjct: 61  CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN 120

Query: 121 RII 124
           RII
Sbjct: 121 RII 123

BLAST of MS011319 vs. NCBI nr
Match: KAG6595108.1 (hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-35
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 0

Query: 2   EEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKN-----NNKKRGGGDGG-EEE 61
           EE SSCSRN EEVL AAQQL+QLSNEDDSSSNVVTAE K        K+ GGGDGG EEE
Sbjct: 3   EESSSCSRNSEEVLDAAQQLVQLSNEDDSSSNVVTAENKKKKKIMKKKEDGGGDGGEEEE 62

Query: 62  VDQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINA 121
           VDQKRCQIE SI SKIEEIFGK++++ EE   SICRP KR  RFRSIQSIYM TKP++NA
Sbjct: 63  VDQKRCQIETSICSKIEEIFGKDDDDDEEGCGSICRPNKR--RFRSIQSIYMNTKPLVNA 122

Query: 122 RFSGNRII 124
           RFSG  I+
Sbjct: 123 RFSGKGIV 128

BLAST of MS011319 vs. NCBI nr
Match: XP_031742655.1 (uncharacterized protein LOC116404425 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 82/132 (62.12%), Postives = 95/132 (71.97%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSS-NVVTAEKKNNNKKRGGGDGG------E 60
           MEEESS S N EEVLGAAQQLMQLSN+D+SS+ +VV AE K N KK  GGDGG      E
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61  EEVDQKRCQIEASIWSKIEEIFGKEEE--ELEEDRNSICRPKKRRSRFRSIQSIYMTTKP 120
           EEVDQKRCQIE+S+W KIEEIFGK+ E        +SI   + ++ RFRSIQSIYM TKP
Sbjct: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQSIYMKTKP 120

Query: 121 IINARFSGNRII 124
           I N RFS   ++
Sbjct: 121 ITNGRFSTKTMV 132

BLAST of MS011319 vs. NCBI nr
Match: KAA0025567.1 (hypothetical protein E6C27_scaffold253G00560 [Cucumis melo var. makuwa] >TYK12441.1 hypothetical protein E5676_scaffold255G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 7.3e-27
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSS-NVVTAEKKNNNKKRGGGDGGEEEVDQK 60
           MEEESS SRN EEVLGAAQQLMQLSN+D+SS+ +VV A KKN  K   GG G EEEVDQK
Sbjct: 1   MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVAAKKNKKKDCCGGGGREEEVDQK 60

Query: 61  RCQIEASIWSKIEEIFGKEEEE-LEEDRNSICRPKKRRSRFRSIQSIYMTTKPII-NARF 120
           RCQIE+SIW KIEEIFGK+E    +   +SI   + ++ RFRSIQSIYM TKP+I N RF
Sbjct: 61  RCQIESSIWLKIEEIFGKDEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKTKPMITNGRF 120

Query: 121 SGNRII 124
           S   ++
Sbjct: 121 STKTMV 126

BLAST of MS011319 vs. NCBI nr
Match: KAG6604263.1 (hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 86/129 (66.67%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDS-----SSNVVTAEKKNNNKK----RGG--G 60
           M E+SS     EEVL AAQ LMQLS EDD      SSNVV A +K  NKK     GG  G
Sbjct: 1   MGEDSS-----EEVLVAAQLLMQLSIEDDDDDDNCSSNVVVAAEKKKNKKLKKGHGGDRG 60

Query: 61  DGG-EEEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMT 118
           DGG EEEVDQKR QIE SIW KIEEIFGK++E  EED NSICRPKKR  RFRS+QSIY+T
Sbjct: 61  DGGEEEEVDQKRYQIETSIWLKIEEIFGKDDE--EEDFNSICRPKKR--RFRSLQSIYIT 120

BLAST of MS011319 vs. ExPASy TrEMBL
Match: A0A6J1BYI0 (uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005872 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKNNNKKRGGGDGGEEEVDQKR 60
           MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKK NNKKRGGGDGGEEEVDQKR
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNKKRGGGDGGEEEVDQKR 60

Query: 61  CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN 120
           CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN
Sbjct: 61  CQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPIINARFSGN 120

Query: 121 RII 124
           RII
Sbjct: 121 RII 123

BLAST of MS011319 vs. ExPASy TrEMBL
Match: A0A5A7SLI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00160 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSS-NVVTAEKKNNNKKRGGGDGGEEEVDQK 60
           MEEESS SRN EEVLGAAQQLMQLSN+D+SS+ +VV A KKN  K   GG G EEEVDQK
Sbjct: 1   MEEESSSSRNSEEVLGAAQQLMQLSNDDNSSNVDVVVAAKKNKKKDCCGGGGREEEVDQK 60

Query: 61  RCQIEASIWSKIEEIFGKEEEE-LEEDRNSICRPKKRRSRFRSIQSIYMTTKPII-NARF 120
           RCQIE+SIW KIEEIFGK+E    +   +SI   + ++ RFRSIQSIYM TKP+I N RF
Sbjct: 61  RCQIESSIWLKIEEIFGKDEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKTKPMITNGRF 120

Query: 121 SGNRII 124
           S   ++
Sbjct: 121 STKTMV 126

BLAST of MS011319 vs. ExPASy TrEMBL
Match: A0A6J1GFL5 (uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC111453726 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.9e-23
Identity = 85/129 (65.89%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDS-----SSNVVTAEKKNNNKK----RGG--G 60
           M E+SS     EEVL AAQ LMQLS EDD      SSNVV A +K  NKK     GG  G
Sbjct: 1   MGEDSS-----EEVLVAAQLLMQLSIEDDDDDDNCSSNVVVAVEKMKNKKLKKGHGGDRG 60

Query: 61  DGG-EEEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIYMT 118
           DGG EEEVDQKR QIE SIW KIEEIFGK++E  E+D NSICRPKKR  RFRS+QSIY+T
Sbjct: 61  DGGEEEEVDQKRYQIETSIWLKIEEIFGKDDE--EQDFNSICRPKKR--RFRSLQSIYVT 120

BLAST of MS011319 vs. ExPASy TrEMBL
Match: A0A0A0KFU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSS-NVVTAEKKNNNKKRGGGDGG------E 60
           MEEESS S N EEVLGAAQQLMQLSN+D+SS+ +VV AE K N KK  GGDGG      E
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSNDDNSSNVDVVVAEAKKNKKKDFGGDGGGGGGCRE 60

Query: 61  EEVDQKRCQIEASIWSKIEEIFGKEEE--ELEEDRNSICRPKKRRSRFRSIQ 104
           EEVDQKRCQIE+S+W KIEEIFGK+ E        +SI   + ++ RFRSIQ
Sbjct: 61  EEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQ 112

BLAST of MS011319 vs. ExPASy TrEMBL
Match: A0A067KGF9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09460 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 17  AAQQLMQLSNEDDSSSNVVTAEKKNNNKKRGGGDGG-EEEVDQKRCQIEASIWSKIEEIF 76
           AAQQLMQLS+ED+S+SN +  EKK+ N K+ G DG  EEE D+   Q E +   KIEEIF
Sbjct: 21  AAQQLMQLSDEDNSNSNSIN-EKKSKNMKKSGFDGDIEEEFDRFISQDEITS-KKIEEIF 80

Query: 77  GKEEEELEEDRNSICRPKKRRSRFRSIQSIYMTTKPI 113
           GKEEEE    + SI   + R+ R+RS++SIY TTK I
Sbjct: 81  GKEEEE----KISIILGRPRKKRYRSLESIYKTTKQI 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022133223.16.7e-5799.19uncharacterized protein LOC111005872 [Momordica charantia][more]
KAG6595108.15.5e-3572.66hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_031742655.12.5e-2762.12uncharacterized protein LOC116404425 [Cucumis sativus][more]
KAA0025567.17.3e-2764.29hypothetical protein E6C27_scaffold253G00560 [Cucumis melo var. makuwa] >TYK1244... [more]
KAG6604263.12.9e-2366.67hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BYI03.3e-5799.19uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5A7SLI93.5e-2764.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1GFL56.9e-2365.89uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC1114537... [more]
A0A0A0KFU11.9e-2062.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1[more]
A0A067KGF91.9e-0954.64Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS011319.1MS011319.1mRNA