MS011304 (gene) Bitter gourd (TR) v1

Overview


Name	MS011304
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein IDA-LIKE 2
Location	scaffold239: 794411 .. 794551 (+)
RNA-Seq Expression	MS011304
Synteny	MS011304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAGCTCAACAATCCAAGCTCAAAAGAGCCTCATTTTTATGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

mRNA sequence

TTTAAGCTCAACAATCCAAGCTCAAAAGAGCCTCATTTTTATGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

Coding sequence (CDS)

TTTAAGCTCAACAATCCAAGCTCAAAAGAGCCTCATTTTTATGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

Protein sequence

FKLNNPSSKEPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP

Homology

[Close]

BLAST of MS011304 vs. NCBI nr
Match: KAG7034431.1 (Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 7.8e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 9  KEPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          K+PH YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWR+P
Sbjct: 47 KKPHSYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRAP 85

[Close]

BLAST of MS011304 vs. NCBI nr
Match: KAE8647464.1 (hypothetical protein Csa_004278 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 6   PSSKEPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
           P +   ++YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 78  PKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 119

[Close]

BLAST of MS011304 vs. NCBI nr
Match: KAE7998278.1 (hypothetical protein FH972_002837 [Carpinus fangiana])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 13 FYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          F GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 42 FSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MS011304 vs. NCBI nr
Match: KAB2002380.1 (hypothetical protein ES319_D11G062600v1 [Gossypium barbadense] >KAG4119131.1 hypothetical protein ERO13_D11G059900v2 [Gossypium hirsutum] >TYG44028.1 hypothetical protein ES288_D11G065300v1 [Gossypium darwinii] >TYH42464.1 hypothetical protein ES332_D11G064600v1 [Gossypium tomentosum] >TYI54296.1 hypothetical protein E1A91_D11G064600v1 [Gossypium mustelinum])

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 10 EPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 40 KPQYEGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MS011304 vs. NCBI nr
Match: KJB40456.1 (hypothetical protein B456_007G064600 [Gossypium raimondii])

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 10 EPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 40 KPQYEGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MS011304 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-08
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 15 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 61 GHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MS011304 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-08
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 17 FFGFLPRRIPIPASGPSRKHNDIGLRSW 45
          F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63 FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MS011304 vs. ExPASy Swiss-Prot
Match: Q6DUW7 (Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-05
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 10 EPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 47
          + H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 63 QDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MS011304 vs. ExPASy Swiss-Prot
Match: Q6DUW8 (Protein IDA-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=IDL5 PE=2 SV=2)

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-03
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 1  FKLNNPSSKEPH-----FYG------HFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 47
          FK+  P+ +  H     F G       F GFLP+ +PIP S PSRKHN  GL+   S
Sbjct: 43 FKVRRPNPRNHHHQNQGFNGDDYPPESFSGFLPKTLPIPHSAPSRKHNVYGLQRTNS 99

[Close]

BLAST of MS011304 vs. ExPASy TrEMBL
Match: A0A0A0KFQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 6  PSSKEPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          P +   ++YGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 48 PKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]

BLAST of MS011304 vs. ExPASy TrEMBL
Match: A0A5N6QG36 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 13 FYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          F GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 42 FSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MS011304 vs. ExPASy TrEMBL
Match: M5W2Q5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 15 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 45 GHFSGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]

BLAST of MS011304 vs. ExPASy TrEMBL
Match: A0A6J5V5G9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38032 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 15 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          GHF GFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 45 GHFSGFLPRRIPIPASGPSRKHNDIGLRSWRSP 77

[Close]

BLAST of MS011304 vs. ExPASy TrEMBL
Match: A0A5D2NA22 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G065900v1 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 10 EPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 40 KPQYKGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MS011304 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-09
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 15 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 48
          GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 61 GHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MS011304 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 17 FFGFLPRRIPIPASGPSRKHNDIGLRSW 45
          F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63 FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MS011304 vs. TAIR 10
Match: AT5G09805.1 (inflorescence deficient in abscission (IDA)-like 3 )

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-06
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 10 EPHFYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 47
          + H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 63 QDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MS011304 vs. TAIR 10
Match: AT1G76952.1 (inflorescence deficient in abscission (IDA)-like 5 )

HSP 1 Score: 43.1 bits (100), Expect = 7.1e-05
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 1  FKLNNPSSKEPH-----FYG------HFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 47
          FK+  P+ +  H     F G       F GFLP+ +PIP S PSRKHN  GL+   S
Sbjct: 43 FKVRRPNPRNHHHQNQGFNGDDYPPESFSGFLPKTLPIPHSAPSRKHNVYGLQRTNS 99

The following BLAST results are available for this feature:

BLAST of MS011304 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034431.1	7.8e-14	92.31	Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAE8647464.1	3.9e-13	83.33	hypothetical protein Csa_004278 [Cucumis sativus]	[more]
KAE7998278.1	1.8e-10	91.43	hypothetical protein FH972_002837 [Carpinus fangiana]	[more]
KAB2002380.1	3.1e-10	78.95	hypothetical protein ES319_D11G062600v1 [Gossypium barbadense] >KAG4119131.1 hyp...	[more]
KJB40456.1	3.1e-10	78.95	hypothetical protein B456_007G064600 [Gossypium raimondii]	[more]

BLAST of MS011304 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DUW6	2.3e-08	69.70	Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1	[more]
Q6DUW9	5.1e-08	82.14	Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1	[more]
Q6DUW7	3.1e-05	54.05	Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1	[more]
Q6DUW8	1.0e-03	42.11	Protein IDA-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=IDL5 PE=2 SV=2	[more]

BLAST of MS011304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ3	1.9e-13	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1	[more]
A0A5N6QG36	8.7e-11	91.43	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1	[more]
M5W2Q5	1.5e-10	96.97	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G159700 PE=4 SV=1	[more]
A0A6J5V5G9	1.5e-10	96.97	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38032 PE=4 S...	[more]
A0A5D2NA22	1.5e-10	78.95	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G065900v1 P...	[more]

BLAST of MS011304 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18715.1	1.6e-09	69.70	inflorescence deficient in abscission (IDA)-like 4	[more]
AT5G64667.1	3.6e-09	82.14	inflorescence deficient in abscission (IDA)-like 2	[more]
AT5G09805.1	2.2e-06	54.05	inflorescence deficient in abscission (IDA)-like 3	[more]
AT1G76952.1	7.1e-05	42.11	inflorescence deficient in abscission (IDA)-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	PANTHER	PTHR33599:SF15	PROTEIN IDA-LIKE 2	coord: 1..47
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011304.1	MS011304.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission