MS011282 (gene) Bitter gourd (TR) v1

Overview


Name	MS011282
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem I reaction center subunit N, chloroplastic
Location	scaffold239: 602509 .. 603735 (+)
RNA-Seq Expression	MS011282
Synteny	MS011282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCATGAATTCCAGTGTTCTGGCCTGCAACTACGCCATTTCCGGAGCTGGATCGGCCGAGCTCAACTCGAAACTCAGCGCCGCGCCCTGCGTCGCATCGCCTGGGGTTGCTGGTTACAAGTTGCCTGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTACCTCGGAGCCACTCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCAATGCTAATGCAGGAGTCATTGAAGAGTATCTTGAAAAGAGTAAAGCTAACAAGGTAGCTATTCTGCTAACCAGACTATTATATGAATAATCTTTGTTTTAGATTCTATTCTGGTCTCTGAACTATAAATATGGTATTCAATTCAAAATTTGTTATTATGCTTTCAAATATTCTGTTCTGTCCCTTTGACTTGGCATAAAAATGCATCTAGTTCTTGTTGCTAAATCTCCATAGTACATGGAATAAGACTCTCATTGTGTACTTTGTCTTCCCTGTCCAACTCCAGAATCAGAACCTTGATGATTAGAGAAGAGTGAGTGATGGCTTTTTCACGTTGAATCACAACCATTTCCCTCACTGTACTTTATCTTGGGATTATTGGGTCTGCAAAAGGCCGTTGAATGCCATGCAAAACTTTAAAGAGAATAAGATAAATCCTTTCGAAGTATAAGGACTAAAAGAGAATAAGAATGGATGCTTCCTTATAAATCTGATCATATTAGAGTTCGGCAAGAAGTATTCGGTACTACAATCGTTGGAGGAACAATACCTCAACTTGAAGATACTCCAGAATCTCCTTTAGAATCTTTTCGATTTCTCCTTCGATGAAACTAGGATTTGGATGAAAAGTATATGGTGTTTCTAATTCTAACCTTGTTATTGCAATAGGAACTGAATGACAAGAAAAGATTGGCAACTAGTGGAGCAAATTTTGCAAGGGCATACACTGTTGAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGGTAAATTTACAATCACTTTCTGCTTTGAGATGTTGACAACATGGTAATGTGTTTTTGTTGAGTACTAAGTTTCTGTGATTTGGGTTTTGATGGATGCAGAAAGTTCCATTTATCTCTGATGATTTGGCTTTGGAGTGTGAGGGGAAGGACAAGTTCAAGTGTGGTTCCAATGTGTTCTGGAAATGG

mRNA sequence

ATGGCGACCATGAATTCCAGTGTTCTGGCCTGCAACTACGCCATTTCCGGAGCTGGATCGGCCGAGCTCAACTCGAAACTCAGCGCCGCGCCCTGCGTCGCATCGCCTGGGGTTGCTGGTTACAAGTTGCCTGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTACCTCGGAGCCACTCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCAATGCTAATGCAGGAGTCATTGAAGAGTATCTTGAAAAGAGTAAAGCTAACAAGGAACTGAATGACAAGAAAAGATTGGCAACTAGTGGAGCAAATTTTGCAAGGGCATACACTGTTGAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGCTTTGGAGTGTGAGGGGAAGGACAAGTTCAAGTGTGGTTCCAATGTGTTCTGGAAATGG

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGTGTTCTGGCCTGCAACTACGCCATTTCCGGAGCTGGATCGGCCGAGCTCAACTCGAAACTCAGCGCCGCGCCCTGCGTCGCATCGCCTGGGGTTGCTGGTTACAAGTTGCCTGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGAAGGAAGGAGAACTGCGCTTCTTTACCTCGGAGCCACTCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCAATGCTAATGCAGGAGTCATTGAAGAGTATCTTGAAAAGAGTAAAGCTAACAAGGAACTGAATGACAAGAAAAGATTGGCAACTAGTGGAGCAAATTTTGCAAGGGCATACACTGTTGAGTTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGCTTTGGAGTGTGAGGGGAAGGACAAGTTCAAGTGTGGTTCCAATGTGTTCTGGAAATGG

Protein sequence

MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW

Homology

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BLAST of MS011282 vs. NCBI nr
Match: XP_022132424.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 334.0 bits (855), Expect = 7.8e-88
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. NCBI nr
Match: XP_038883748.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 162/171 (94.74%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A P VASPGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. NCBI nr
Match: XP_008441057.1 (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo] >KAA0025524.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa] >TYK25680.1 photosystem I reaction center subunit N [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-83
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A P VASPGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. NCBI nr
Match: XP_022950888.1 (photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 159/171 (92.98%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+L+SK++AAP VASPGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNS+ANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. NCBI nr
Match: KAG6604288.1 (Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 159/171 (92.98%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+L+SK++AAP VASPGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 732 MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 791

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNS+ANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 792 RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 851

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDK+KCGSNVFWKW
Sbjct: 852 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 902

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BLAST of MS011282 vs. ExPASy Swiss-Prot
Match: P49107 (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=2)

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-56
Identity = 116/175 (66.29%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYK---LPAIRAQQARVPEAK 60
           MA MNSSVL C+YAI+G+GS ELN K+      +S G    K   +P I+AQ+    +  
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVN--SSVGFGQKKQMIMPVIKAQRVVGDDVD 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            + GRR+A+++L ATLF+ AA   +++ANAGVI+EYLE+SK NKELNDKKRLATSGANFA
Sbjct: 61  GSNGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           RA+TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ALECEGKDK+KCGSNVFWKW
Sbjct: 121 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. ExPASy Swiss-Prot
Match: P31093 (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-43
Identity = 99/158 (62.66%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 15  ISGAGSAELNSKLSAA-PCVASPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLF 74
           ++G  ++ +  K +AA P  ASP  A            RV  A  + RR+ALL L A   
Sbjct: 1   MAGVNTSVVGLKPAAAVPQSASPAAA-----------KRVQVAPAKDRRSALLGLAAVF- 60

Query: 75  AAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFT 134
            AA AAS  +A A V +EYLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFT
Sbjct: 61  -AATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFT 120

Query: 135 GCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           GCQDLAKQKKVPFI+DDL +ECEGK+KFKCGSNVFWKW
Sbjct: 121 GCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of MS011282 vs. ExPASy Swiss-Prot
Match: O65107 (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=PSAN PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-41
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 80  SNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  +A A + +EYLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           KQKKVPFISDDL +ECEGK+KFKCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]

BLAST of MS011282 vs. ExPASy Swiss-Prot
Match: Q9SBN5 (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067 GN=PSAN PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.8e-25
Identity = 70/132 (53.03%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 45  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSNANAGVIEEYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A +   ANAGV+E+ L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLAL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL +
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKFKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

[Close]

BLAST of MS011282 vs. ExPASy TrEMBL
Match: A0A6J1BT08 (photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005283 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.8e-88
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. ExPASy TrEMBL
Match: A0A5D3DQX9 (Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00100 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A P VASPGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. ExPASy TrEMBL
Match: A0A1S3B240 (photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485284 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A P VASPGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. ExPASy TrEMBL
Match: A0A6J1GG47 (photosystem I reaction center subunit N, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453849 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 159/171 (92.98%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+L+SK++AAP VASPGV GYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNS+ANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. ExPASy TrEMBL
Match: A0A0A0KFM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 158/171 (92.40%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+AAP VASPGV GYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNS+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDK+KCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. TAIR 10
Match: AT5G64040.1 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-57
Identity = 116/175 (66.29%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYK---LPAIRAQQARVPEAK 60
           MA MNSSVL C+YAI+G+GS ELN K+      +S G    K   +P I+AQ+    +  
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVN--SSVGFGQKKQMIMPVIKAQRVVGDDVD 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            + GRR+A+++L ATLF+ AA   +++ANAGVI+EYLE+SK NKELNDKKRLATSGANFA
Sbjct: 61  GSNGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKFKCGSNVFWKW 172
           RA+TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ALECEGKDK+KCGSNVFWKW
Sbjct: 121 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of MS011282 vs. TAIR 10
Match: AT5G64040.2 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) )

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-39
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAAPCVASPGVAGYK---LPAIRAQQARVPEAK 60
           MA MNSSVL C+YAI+G+GS ELN K+      +S G    K   +P I+AQ+    +  
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVN--SSVGFGQKKQMIMPVIKAQRVVGDDVD 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSNANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            + GRR+A+++L ATLF+ AA   +++ANAGVI+EYLE+SK NKELNDKKRLATSGANFA
Sbjct: 61  GSNGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQK 143
           RA+TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 RAFTVQFGSCKFPENFTGCQDLAKQK 142

The following BLAST results are available for this feature:

BLAST of MS011282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132424.1	7.8e-88	99.42	photosystem I reaction center subunit N, chloroplastic isoform X1 [Momordica cha...	[more]
XP_038883748.1	1.5e-83	94.74	photosystem I reaction center subunit N, chloroplastic isoform X1 [Benincasa his...	[more]
XP_008441057.1	3.4e-83	94.15	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]...	[more]
XP_022950888.1	2.2e-82	92.98	photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata]	[more]
KAG6604288.1	2.2e-82	92.98	Photosystem I reaction center subunit N, chloroplastic, partial [Cucurbita argyr...	[more]

BLAST of MS011282 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49107	2.2e-56	66.29	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana O...	[more]
P31093	2.7e-43	62.66	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=451...	[more]
O65107	4.4e-41	83.70	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX...	[more]
Q9SBN5	9.8e-25	53.03	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067...	[more]

BLAST of MS011282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT08	3.8e-88	99.42	photosystem I reaction center subunit N, chloroplastic isoform X1 OS=Momordica c...	[more]
A0A5D3DQX9	1.7e-83	94.15	Photosystem I reaction center subunit N OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3B240	1.7e-83	94.15	photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A6J1GG47	1.1e-82	92.98	photosystem I reaction center subunit N, chloroplastic-like OS=Cucurbita moschat...	[more]
A0A0A0KFM1	2.4e-82	92.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=3 SV=1	[more]

BLAST of MS011282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64040.1	1.5e-57	66.29	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]
AT5G64040.2	7.2e-39	61.64	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 e-value: 1.4E-65 score: 219.4
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PANTHER	PTHR36814	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..171
IPR044907	Photosystem I reaction centre subunit N superfamily	GENE3D	4.10.1190.10		coord: 87..171 e-value: 5.0E-52 score: 176.2
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011282.1	MS011282.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I