MS011198 (gene) Bitter gourd (TR) v1

Overview


Name	MS011198
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein BIC1-like
Location	scaffold239: 91034 .. 91276 (+)
RNA-Seq Expression	MS011198
Synteny	MS011198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACCGGCCGGGAGCGGCTCACGCGCCACCGGCTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAAAAATGGGGCAAGGAGGAGTTCTTGAAGGATTGGATCGACGGCTCTGCCTTTGAAGCCTCTTTGCTCCCCTCCGGTGTCGTGTCGGCTCGCCTGGCTTTGGTCACACAAGGCAAGAGATCGTCGTCGTCGCCGCCCGCCGCCGCCGCCGCCGGAGCTATGAGAATATTAAACAGCTGT

mRNA sequence

GAGACCGGCCGGGAGCGGCTCACGCGCCACCGGCTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAAAAATGGGGCAAGGAGGAGTTCTTGAAGGATTGGATCGACGGCTCTGCCTTTGAAGCCTCTTTGCTCCCCTCCGGTGTCGTGTCGGCTCGCCTGGCTTTGGTCACACAAGGCAAGAGATCGTCGTCGTCGCCGCCCGCCGCCGCCGCCGCCGGAGCTATGAGAATATTAAACAGCTGT

Coding sequence (CDS)

GAGACCGGCCGGGAGCGGCTCACGCGCCACCGGCTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAAAAATGGGGCAAGGAGGAGTTCTTGAAGGATTGGATCGACGGCTCTGCCTTTGAAGCCTCTTTGCTCCCCTCCGGTGTCGTGTCGGCTCGCCTGGCTTTGGTCACACAAGGCAAGAGATCGTCGTCGTCGCCGCCCGCCGCCGCCGCCGCCGGAGCTATGAGAATATTAAACAGCTGT

Protein sequence

ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGKRSSSSPPAAAAAGAMRILNSC

Homology

[Close]

BLAST of MS011198 vs. NCBI nr
Match: KAG7027199.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+VSAR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+AAAGA+RILNSC
Sbjct: 95  RSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of MS011198 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+VSAR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+AAAGA+RILNSC
Sbjct: 95  RSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of MS011198 vs. NCBI nr
Match: XP_038882952.1 (protein BIC2-like [Benincasa hispida])

HSP 1 Score: 123.6 bits (309), Expect = 7.6e-25
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E+GRERL RHR+AVAGQVWIP+KWGKEEFLKDWIDGSAFEASL PSG+VSAR AL    K
Sbjct: 44  ESGRERLKRHRVAVAGQVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARRALARDAK 103

Query: 61  R-----SSSSPPAAAAAGAMRILNSC 82
           R     ++++  AAA AGA+RILNSC
Sbjct: 104 RLSPNNNAAATTAAAGAGALRILNSC 129

[Close]

BLAST of MS011198 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 63/84 (75.00%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+V AR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+AAAGA+RILNSC
Sbjct: 95  RSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of MS011198 vs. NCBI nr
Match: XP_022962648.1 (protein BIC1-like [Cucurbita moschata])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+VSAR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+A AG++RILNSC
Sbjct: 95  RSSPNNNSAAASATAGSLRILNSC 118

[Close]

BLAST of MS011198 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-17
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           +TGRERL +HR  +AG+VWIPE WG+EE LKDWID S F+  L+P+G+ SAR ALV + +
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query: 61  RSSSS 66
           R++S+
Sbjct: 124 RAASA 128

[Close]

BLAST of MS011198 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-09
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 2   TGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGKR 61
           +GR+RL RHR  VAG+V IP+ WGKE  L  W+D S F+A+   S +VSAR AL+     
Sbjct: 39  SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALM----- 98

Query: 62  SSSSPPAAAAAGA----MRILNSC 82
            + S   A A G+    +R+ +SC
Sbjct: 99  -ADSGDDAGARGSRPQRLRVESSC 116

[Close]

BLAST of MS011198 vs. ExPASy TrEMBL
Match: A0A6J1I6F1 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.3e-25
Identity = 63/84 (75.00%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+V AR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+AAAGA+RILNSC
Sbjct: 95  RSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of MS011198 vs. ExPASy TrEMBL
Match: A0A6J1HFE1 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E G ERL RHR+AVAGQVWIPEKWGKEE LKDWIDGSAFEASL PSG+VSAR AL  + K
Sbjct: 35  ENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAK 94

Query: 61  RSS---SSPPAAAAAGAMRILNSC 82
           RSS   +S  A+A AG++RILNSC
Sbjct: 95  RSSPNNNSAAASATAGSLRILNSC 118

[Close]

BLAST of MS011198 vs. ExPASy TrEMBL
Match: A0A5D3C697 (Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001370 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E+ RERL RHR+AVAG VWIP+KWGKEEFLKDWIDGSAFEASL PSG+VSAR AL    K
Sbjct: 42  ESSRERLKRHRMAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARCALARDAK 101

Query: 61  R-----SSSSPPAAAAAGAMRILNS 81
           R     ++++  A AAAGA+RILNS
Sbjct: 102 RLSPNNNTATATATAAAGALRILNS 126

[Close]

BLAST of MS011198 vs. ExPASy TrEMBL
Match: A0A0A0KFC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.5e-22
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E+ RERL RHR+AVAG VWIP+KWGKEEFLKDWIDGSAFEASL  SG+VSAR AL    K
Sbjct: 41  ESSRERLKRHRMAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAK 100

Query: 61  R-------SSSSPPAAAAAGAMRILNS 81
           R       ++++  A AAAGA+RILNS
Sbjct: 101 RLSPNNNTATAAATATAAAGALRILNS 127

[Close]

BLAST of MS011198 vs. ExPASy TrEMBL
Match: A0A061ETV0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022582 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           E GRERL RHR+ VAG+VWIPE WG+E+ LKDWID SAFEASL+PSG++SAR AL+ +G+
Sbjct: 97  ENGRERLRRHRIEVAGRVWIPEIWGQEQLLKDWIDCSAFEASLVPSGIMSARAALIEEGR 156

Query: 61  RSSSSPPAAAAAGAMRILNSC 82
            ++S        G  RI NSC
Sbjct: 157 TANS--------GRFRIENSC 169

[Close]

BLAST of MS011198 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-18
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1   ETGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGK 60
           +TGRERL +HR  +AG+VWIPE WG+EE LKDWID S F+  L+P+G+ SAR ALV + +
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query: 61  RSSSS 66
           R++S+
Sbjct: 124 RAASA 128

[Close]

BLAST of MS011198 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 2   TGRERLTRHRLAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLLPSGVVSARLALVTQGKR 61
           +GR+RL RHR  VAG+V IP+ WGKE  L  W+D S F+A+   S +VSAR AL+     
Sbjct: 39  SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALM----- 98

Query: 62  SSSSPPAAAAAGA----MRILNSC 82
            + S   A A G+    +R+ +SC
Sbjct: 99  -ADSGDDAGARGSRPQRLRVESSC 116

The following BLAST results are available for this feature:

BLAST of MS011198 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027199.1	3.4e-25	76.19	Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023518112.1	3.4e-25	76.19	protein BIC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038882952.1	7.6e-25	72.09	protein BIC2-like [Benincasa hispida]	[more]
XP_022972606.1	1.3e-24	75.00	protein BIC1-like [Cucurbita maxima]	[more]
XP_022962648.1	2.2e-24	73.81	protein BIC1-like [Cucurbita moschata]	[more]

BLAST of MS011198 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ1	4.7e-17	58.46	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]
Q9M280	3.6e-09	44.05	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]

BLAST of MS011198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6F1	6.3e-25	75.00	protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1	[more]
A0A6J1HFE1	1.1e-24	73.81	protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1	[more]
A0A5D3C697	3.5e-23	69.41	Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFC4	6.5e-22	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1	[more]
A0A061ETV0	2.6e-18	60.49	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022582 PE=4 SV=1	[more]

BLAST of MS011198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52740.1	3.3e-18	58.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G44450.1	2.5e-10	44.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34207:SF2	PROTEIN BIC1	coord: 1..79
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011198.1	MS011198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway