MS011188 (gene) Bitter gourd (TR) v1

Overview


Name	MS011188
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LysM domain-containing protein
Location	scaffold239: 29913 .. 30161 (-)
RNA-Seq Expression	MS011188
Synteny	MS011188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAAAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTCCTCTTT

mRNA sequence

GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAAAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTCCTCTTT

Coding sequence (CDS)

GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAAAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTCCTCTTT

Protein sequence

VIVMVLSCCLCKSQKMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTIHPNFLLF

Homology

[Close]

BLAST of MS011188 vs. NCBI nr
Match: MBA0867051.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 106.7 bits (265), Expect = 9.9e-20
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           +++V+SCC   ++K E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPH
Sbjct: 22  VMLVMSCCQEPNEKGEEGMMRVVHQSKKPCDEIYVVREGETLHTISEKCGDPFIVEHNPH 81

Query: 62  INDSDDVFPGLVIKITPFRHT 76
           I+D DDVFPGLVIKITPF  T
Sbjct: 82  IHDPDDVFPGLVIKITPFLST 102

[Close]

BLAST of MS011188 vs. NCBI nr
Match: RHN48654.1 (putative LysM domain-containing protein [Medicago truncatula])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
           VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 24  VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 83

Query: 61  HINDSDDVFPGLVIKITPF 73
           HI+D DDVFPGLVIKI PF
Sbjct: 84  HIHDPDDVFPGLVIKINPF 102

[Close]

BLAST of MS011188 vs. NCBI nr
Match: AES82004.1 (peptidoglycan-binding LysM domain protein [Medicago truncatula])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
          VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 15 VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 74

Query: 61 HINDSDDVFPGLVIKITPF 73
          HI+D DDVFPGLVIKI PF
Sbjct: 75 HIHDPDDVFPGLVIKINPF 93

[Close]

BLAST of MS011188 vs. NCBI nr
Match: MBA0567188.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPH
Sbjct: 22  VMLVMSCCQDPNERGEEGMMRVVHQSKKPCDEIYVVREGETLHTISEKCGDPFIVEHNPH 81

Query: 62  INDSDDVFPGLVIKITPFRHT 76
           I+D DDVFPGLVIKITPF  T
Sbjct: 82  IHDPDDVFPGLVIKITPFLST 102

[Close]

BLAST of MS011188 vs. NCBI nr
Match: XP_019186406.1 (PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQH 61
           +++VLSCC     +   +M +           CDEIYVVREGETLHTISDKCGDPFI++ 
Sbjct: 28  LMLVLSCCESTENEFAAKMMVERPPHAAAAGVCDEIYVVREGETLHTISDKCGDPFIVEE 87

Query: 62  NPHINDSDDVFPGLVIKITPFRHTI 77
           NPHI+D DDVFPGLVIKITPF H +
Sbjct: 88  NPHIHDPDDVFPGLVIKITPFNHRL 112

[Close]

BLAST of MS011188 vs. ExPASy TrEMBL
Match: A0A7J9M7S9 (LysM domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_026737 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.8e-20
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           +++V+SCC   ++K E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPH
Sbjct: 22  VMLVMSCCQEPNEKGEEGMMRVVHQSKKPCDEIYVVREGETLHTISEKCGDPFIVEHNPH 81

Query: 62  INDSDDVFPGLVIKITPFRHT 76
           I+D DDVFPGLVIKITPF  T
Sbjct: 82  IHDPDDVFPGLVIKITPFLST 102

[Close]

BLAST of MS011188 vs. ExPASy TrEMBL
Match: G7L607 (Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g104250 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
          VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 15 VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 74

Query: 61 HINDSDDVFPGLVIKITPF 73
          HI+D DDVFPGLVIKI PF
Sbjct: 75 HIHDPDDVFPGLVIKINPF 93

[Close]

BLAST of MS011188 vs. ExPASy TrEMBL
Match: A0A396HA20 (Putative LysM domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0266071 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   VIVMVLSCCLCKSQKMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
           VI+++L+CC  +  ++ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 24  VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 83

Query: 61  HINDSDDVFPGLVIKITPF 73
           HI+D DDVFPGLVIKI PF
Sbjct: 84  HIHDPDDVFPGLVIKINPF 102

[Close]

BLAST of MS011188 vs. ExPASy TrEMBL
Match: A0A7J8MR45 (LysM domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_011942 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.2e-20
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPH
Sbjct: 22  VMLVMSCCQDPNERGEEGMMRVVHQSKKPCDEIYVVREGETLHTISEKCGDPFIVEHNPH 81

Query: 62  INDSDDVFPGLVIKITPFRHT 76
           I+D DDVFPGLVIKITPF  T
Sbjct: 82  IHDPDDVFPGLVIKITPFLST 102

[Close]

BLAST of MS011188 vs. ExPASy TrEMBL
Match: A0A1U8NKV3 (uncharacterized protein LOC107948467 OS=Gossypium hirsutum OX=3635 GN=LOC107948467 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2   IVMVLSCCLCKSQKMEMEM-------EMACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           +++V+SCC   +++ E  M       +  CDEIYVVREGETLHTIS+KCGDPFI++HNPH
Sbjct: 22  VMLVMSCCQEPNERGEEGMMRVVHQSKKPCDEIYVVREGETLHTISEKCGDPFIVEHNPH 81

Query: 62  INDSDDVFPGLVIKITPFRHT 76
           I+D DDVFPGLVIKITPF  T
Sbjct: 82  IHDPDDVFPGLVIKITPFLST 102

[Close]

BLAST of MS011188 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 24 CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF 73
          C+EIY+V EGETLHTI DKCGDPFI++ NPHI+D DDVFPGLV+KI PF
Sbjct: 48 CEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96

[Close]

BLAST of MS011188 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 23  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP 72
           ACDEIY V+EGETL TIS+KCGDP+I++ NPHI+D DD+FPGL+I+ITP
Sbjct: 59  ACDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

[Close]

BLAST of MS011188 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 11  CKSQKMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI 70
           C+  + +  ME  C+E+YVV EG+TLH+IS+KCGDPFI++ NPHI+D DDVFPGL+IK+
Sbjct: 46  CEVWRGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:

BLAST of MS011188 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0867051.1	9.9e-20	64.20	hypothetical protein [Gossypium schwendimanii]	[more]
RHN48654.1	1.3e-19	63.29	putative LysM domain-containing protein [Medicago truncatula]	[more]
AES82004.1	1.3e-19	63.29	peptidoglycan-binding LysM domain protein [Medicago truncatula]	[more]
MBA0567188.1	1.7e-19	62.96	hypothetical protein [Gossypium lobatum]	[more]
XP_019186406.1	2.2e-19	60.00	PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil]	[more]

BLAST of MS011188 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9M7S9	4.8e-20	64.20	LysM domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0267...	[more]
G7L607	6.3e-20	63.29	Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_...	[more]
A0A396HA20	6.3e-20	63.29	Putative LysM domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA...	[more]
A0A7J8MR45	8.2e-20	62.96	LysM domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_011942 PE=...	[more]
A0A1U8NKV3	1.1e-19	62.96	uncharacterized protein LOC107948467 OS=Gossypium hirsutum OX=3635 GN=LOC1079484...	[more]

BLAST of MS011188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	4.0e-19	77.55	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.7e-17	73.47	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.7e-17	61.02	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 18..77 e-value: 3.6E-8 score: 34.8
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 28..70 e-value: 1.3E-5 score: 25.2
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 27..69 e-value: 1.21501E-6 score: 39.3909
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 3..74
None	No IPR available	PANTHER	PTHR33648:SF15	EMBRYO SAC 1	coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011188.1	MS011188.1	mRNA