MS011184 (gene) Bitter gourd (TR) v1

Overview


Name	MS011184
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GDSL esterase/lipase
Location	scaffold239: 1149 .. 1286 (+)
RNA-Seq Expression	MS011184
Synteny	MS011184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTATTCAGGGATTCCTATGTTGACACTGGCAACGAGATGTTAGGTTCAAATCCTTTCCTCAAAATTTCATATGGAATTACCTTTCCTAACAAATCTCATGGACGTTACTTCAACAGTTATCTTCTCATGGATTAC

mRNA sequence

TTTGTATTCAGGGATTCCTATGTTGACACTGGCAACGAGATGTTAGGTTCAAATCCTTTCCTCAAAATTTCATATGGAATTACCTTTCCTAACAAATCTCATGGACGTTACTTCAACAGTTATCTTCTCATGGATTAC

Coding sequence (CDS)

TTTGTATTCAGGGATTCCTATGTTGACACTGGCAACGAGATGTTAGGTTCAAATCCTTTCCTCAAAATTTCATATGGAATTACCTTTCCTAACAAATCTCATGGACGTTACTTCAACAGTTATCTTCTCATGGATTAC

Protein sequence

FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY

Homology

[Close]

BLAST of MS011184 vs. NCBI nr
Match: PQQ18975.1 (hypothetical protein Pyn_27317 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN      P  K  YGITFP KS GR+ N ++L DY
Sbjct: 44 FVFGDSYVDTGNIRKSVAPSWKEPYGITFPGKSAGRFSNGHVLTDY 89

[Close]

BLAST of MS011184 vs. NCBI nr
Match: CAB4299284.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K+ GR+ N  +L DY
Sbjct: 42 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKTAGRFSNGRVLTDY 87

[Close]

BLAST of MS011184 vs. NCBI nr
Match: XP_021831050.1 (GDSL esterase/lipase At5g03610-like [Prunus avium])

HSP 1 Score: 53.5 bits (127), Expect = 5.5e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 44 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKPAGRFSNGRVLTDY 89

[Close]

BLAST of MS011184 vs. NCBI nr
Match: CAB4268674.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.5 bits (127), Expect = 5.5e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 42 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKPAGRFSNGRVLTDY 87

[Close]

BLAST of MS011184 vs. NCBI nr
Match: PQQ21960.1 (GDSL esterase/lipase [Prunus yedoensis var. nudiflora])

HSP 1 Score: 53.5 bits (127), Expect = 5.5e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 42 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKPAGRFSNGRVLTDY 87

[Close]

BLAST of MS011184 vs. ExPASy Swiss-Prot
Match: Q9SF94 (GDSL esterase/lipase At3g09930 OS=Arabidopsis thaliana OX=3702 GN=At3g09930 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 8.8e-05
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN     +   KI YGITFP K  GR+ +  +  D+
Sbjct: 41 FVFGDSYADTGNIRKSLSDSWKIPYGITFPQKPSGRFSDGRVATDF 86

[Close]

BLAST of MS011184 vs. ExPASy Swiss-Prot
Match: Q9LZS8 (GDSL esterase/lipase At5g03600 OS=Arabidopsis thaliana OX=3702 GN=At5g03600 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.4e-04
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN    +  +  I YGITFP K  GRY +  +  D+
Sbjct: 16 FVFGDSYADTGNTKRDTEAW-AIPYGITFPGKPSGRYCDGLIATDF 60

[Close]

BLAST of MS011184 vs. ExPASy Swiss-Prot
Match: Q9LZS7 (GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana OX=3702 GN=At5g03610 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.4e-04
Identity = 21/46 (45.65%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN     +   K  YGITFP K  GR+ +  +  D+
Sbjct: 45 FVFGDSYADTGNIKKAFSSSWKFPYGITFPGKPAGRFSDGRVATDF 90

[Close]

BLAST of MS011184 vs. ExPASy TrEMBL
Match: A0A314ZGK5 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27317 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-05
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN      P  K  YGITFP KS GR+ N ++L DY
Sbjct: 44 FVFGDSYVDTGNIRKSVAPSWKEPYGITFPGKSAGRFSNGHVLTDY 89

[Close]

BLAST of MS011184 vs. ExPASy TrEMBL
Match: A0A6J5WJ01 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS13163 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K+ GR+ N  +L DY
Sbjct: 42 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKTAGRFSNGRVLTDY 87

[Close]

BLAST of MS011184 vs. ExPASy TrEMBL
Match: M5X910 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026385mg PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 20 FVFGDSYVDTGNIRKSVSPLWKEPYGITFPGKPAGRFSNGRVLTDY 65

[Close]

BLAST of MS011184 vs. ExPASy TrEMBL
Match: A0A314ZTH8 (GDSL esterase/lipase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_26416 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 42 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKPAGRFSNGRVLTDY 87

[Close]

BLAST of MS011184 vs. ExPASy TrEMBL
Match: A0A6P5TVI5 (GDSL esterase/lipase At5g03610-like OS=Prunus avium OX=42229 GN=LOC110771112 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSYVDTGN     +P  K  YGITFP K  GR+ N  +L DY
Sbjct: 44 FVFGDSYVDTGNIRKSVSPSWKEPYGITFPGKPAGRFSNGRVLTDY 89

[Close]

BLAST of MS011184 vs. TAIR 10
Match: AT3G09930.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.3e-06
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN     +   KI YGITFP K  GR+ +  +  D+
Sbjct: 41 FVFGDSYADTGNIRKSLSDSWKIPYGITFPQKPSGRFSDGRVATDF 86

[Close]

BLAST of MS011184 vs. TAIR 10
Match: AT5G03600.1 (SGNH hydrolase-type esterase superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.4e-05
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN    +  +  I YGITFP K  GRY +  +  D+
Sbjct: 16 FVFGDSYADTGNTKRDTEAW-AIPYGITFPGKPSGRYCDGLIATDF 60

[Close]

BLAST of MS011184 vs. TAIR 10
Match: AT5G03610.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.4e-05
Identity = 21/46 (45.65%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 1  FVFRDSYVDTGNEMLGSNPFLKISYGITFPNKSHGRYFNSYLLMDY 47
          FVF DSY DTGN     +   K  YGITFP K  GR+ +  +  D+
Sbjct: 45 FVFGDSYADTGNIKKAFSSSWKFPYGITFPGKPAGRFSDGRVATDF 90

The following BLAST results are available for this feature:

BLAST of MS011184 vs. NCBI nr


Match Name	E-value	Identity	Description
PQQ18975.1	1.1e-04	58.70	hypothetical protein Pyn_27317 [Prunus yedoensis var. nudiflora]	[more]
CAB4299284.1	3.2e-04	56.52	unnamed protein product [Prunus armeniaca]	[more]
XP_021831050.1	5.5e-04	56.52	GDSL esterase/lipase At5g03610-like [Prunus avium]	[more]
CAB4268674.1	5.5e-04	56.52	unnamed protein product [Prunus armeniaca]	[more]
PQQ21960.1	5.5e-04	56.52	GDSL esterase/lipase [Prunus yedoensis var. nudiflora]	[more]

BLAST of MS011184 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SF94	8.8e-05	47.83	GDSL esterase/lipase At3g09930 OS=Arabidopsis thaliana OX=3702 GN=At3g09930 PE=2...	[more]
Q9LZS8	3.4e-04	47.83	GDSL esterase/lipase At5g03600 OS=Arabidopsis thaliana OX=3702 GN=At5g03600 PE=3...	[more]
Q9LZS7	3.4e-04	45.65	GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana OX=3702 GN=At5g03610 PE=2...	[more]

BLAST of MS011184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314ZGK5	5.4e-05	58.70	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_273...	[more]
A0A6J5WJ01	1.6e-04	56.52	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS13163 PE=...	[more]
M5X910	1.6e-04	56.52	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026385m...	[more]
A0A314ZTH8	2.7e-04	56.52	GDSL esterase/lipase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_26416 ...	[more]
A0A6P5TVI5	2.7e-04	56.52	GDSL esterase/lipase At5g03610-like OS=Prunus avium OX=42229 GN=LOC110771112 PE=...	[more]

BLAST of MS011184 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09930.1	6.3e-06	47.83	GDSL-like Lipase/Acylhydrolase superfamily protein	[more]
AT5G03600.1	2.4e-05	47.83	SGNH hydrolase-type esterase superfamily protein	[more]
AT5G03610.1	2.4e-05	45.65	GDSL-like Lipase/Acylhydrolase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011184.1	MS011184.1	mRNA