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MS011103 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTCAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCCATCTTCGAGCTTCTTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAGTAATTCACGTTTCTCTTTCTTTCCTCTTTCTATGCATTTTATGATACGTTTTACTTGATTTCCTTGATTTTGTATTTCTGAAGTTTCCCCCCCAATTTGTTGCGTTCGTTTCGTACTGATGTTGTTGGAGTACTTCCTTGGAATGTGAATTTTTCCGCTTTGATTGCCTTTTCTGTGCTTGTTCTTGTTTACTTCCTTTTCTTTCGCGATTTTAGTTGCCCTATTTCTGTTGATGCTATTTTGTACCTTTGATTTCTTTTTCAAGTCTCCTTTCCGCTATTATCAATGATTAAATTTATGCAGTTAGTTTGAAGGGTCAAAACTGAAAAGAAATTGAGTTGTTTTGAGCAGAGAAGGCACTAGGAAAGTTCGGGGTGGTTTATTATAAACGAGTGAGAGAATTAGACCTTCAAAGGCAAAGAATTCAAAATCTCCAAAGTTACTTAAGGAATGTCTAAGGAGTCCTAAGAAAGAAATTGAACCTACACAAAGAAGACTGGGGAGACAAATCATCCCCTGCCGAAGAAAGGGAAAATTGCTAGAAAGTACTCCCATCTAGGAGTGAAATAGAATATGAAACTGTAAACTTCCAAACACTGGAAGAAGGCTAGGACTTTGACCGTGTACTTGTTCAAAAATTAGCAGTGTAAAAAGATGGTGCAATTAAAAAAAATTCTGGTGTAAAGTACTCCAAAGCTGTGTAATGTATATTCAAAAAAATCTTTTAGGTGGATTGATTTGGATTGAAACTTTTCTTATTTTCATGTCTCTGTGTGAAGGTGAGCAGAGATACAAACTTTGTTGTACTGCTGATAGAAGTTATAATTCCTTGAGATTTTTTTGCAAAGTCTATTGGGCCTACAGAACGTGTAGTTAGATAAATTGATGAGCTTAAGGAATAATTTTTTTGTGTAGGTTGCTTATCAAACTGGTCAACTACGATTTCTGAAAATACGATTCTAAAGTTGAGTGCAATAAAATAATGCTTGTATCTATGTTTTAGAAAAAAGCTGTAAACAACAACAAAAAAAAACTTGGTTTTGTTGTTTCCAAACTTTCTTTAAAATGAAAAAATGAGGACAAGAACAGCTACCTAACGTTATGTTTCTCAAAAATTGGAAACGAAAAAGAATTAACAAGAACGTTACCAAACGAGCCCTTACATCAAATGTCCCACTTGCACACAAATAATGATGTTTAATGGATAATGATGTTTAATGGAAGTGATGTGAGTGGATAATAAAGCATTGATGGAATTCTGGAACTAATGTATTGAGAATTATGTGGACTTGACACAGATCTCCAATTCTTTTTCAATGTATTCCTTCTTTTACATTTAAGAACCTGGCCAGAAAGGGTCAATTATTTATTTGAAGTGATAAAAAAAAAACAGTTAAAGATGGGCTCTGGCTTTCTGTGTATATCTCTAAAAGTTATCCAGTTCTTCTCATTAGCCTTCTCGGGTACTTTCCAGTAAACTTCCTTTGCTCTATTTTGGCTTGTTTGTGTCGTCTTGCAATATGGGTGGCTTTCACCCACTATAACGTTATTATTTATACAGCCATCATCACATTTTGAGTATACTTATCCATATTTTGGTGACGTCCTTCACCTTTCTAATTGAAACTAATCTTTCAGGAAAAGTGAAAGAGAGAAGAAAGCAGCATTGCTGTCTCATCTATTGTTCAATTCTAATACATCTGCCTTCTGAAAACAATTTTTTATGAACCATTGAATTTTCTTGTTCTCCTCTTTTTCATAATATTTTGTGGAGTCTTTGGAATCTTTTGATGTCTAGGTTGTAAAAGAAGTCTTGTATAGGAGGTTATTGTAATTTGTAATATCAGATCCATGGGATTCGTTTTCTGGAGCACCTGTGAATATTCAAATCCTGCTTCCATTGAGATTCTTTTTTTAACTAAACAAAAAAGGTGTACACAATATGCAGATTTACCGCACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAGGTAATTGCATTGCTTTCCTGCTTAGGCGATGAAACCATTATATGATGTCTAATCTCCGGCCAATTCACTTATCAACCTGTGGCAGTGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGGTTACGCTCCGCCTAGTTCCATCTTTACAAGATTAGATAACTTATGCTTGAAAATTAATGTACTTTCTGCGTCTGTCAAAACCAGAAATTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTATTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGAACAGGTGGCAGATTGCTGGTAT ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTCAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCCATCTTCGAGCTTCTTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCGCACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAGTGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAATTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTATTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGAACAGGTGGCAGATTGCTGGTAT ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTCAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCCATCTTCGAGCTTCTTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCGCACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAGTGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAATTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTATTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGAACAGGTGGCAGATTGCTGGTAT MWASTVSFPCLSNPRFPILLSNPTHGTARQSLHLRASFFDYPLASRVMVRNLPHSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDYFGGYPRTSGPPKERPKLELEQVADCWY Homology
BLAST of MS011103 vs. NCBI nr
Match: XP_022146475.1 (glycine-rich RNA-binding protein 4, mitochondrial [Momordica charantia]) HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82 Identity = 149/154 (96.75%), Postives = 152/154 (98.70%), Query Frame = 0
BLAST of MS011103 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]) HSP 1 Score: 254.6 bits (649), Expect = 5.4e-64 Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0
BLAST of MS011103 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima]) HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61 Identity = 121/156 (77.56%), Postives = 135/156 (86.54%), Query Frame = 0
BLAST of MS011103 vs. NCBI nr
Match: XP_038883016.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]) HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61 Identity = 119/174 (68.39%), Postives = 138/174 (79.31%), Query Frame = 0
BLAST of MS011103 vs. NCBI nr
Match: XP_022926008.1 (small RNA-binding protein 11, chloroplastic [Cucurbita moschata] >KAG6581509.1 Small RNA-binding protein 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034800.1 Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61 Identity = 121/156 (77.56%), Postives = 134/156 (85.90%), Query Frame = 0
BLAST of MS011103 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14 Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 0
BLAST of MS011103 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14 Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0
BLAST of MS011103 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2) HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0
BLAST of MS011103 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12 Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 0
BLAST of MS011103 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 5.0e-12 Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 0
BLAST of MS011103 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 7.4e-83 Identity = 149/154 (96.75%), Postives = 152/154 (98.70%), Query Frame = 0
BLAST of MS011103 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64 Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0
BLAST of MS011103 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62 Identity = 121/156 (77.56%), Postives = 135/156 (86.54%), Query Frame = 0
BLAST of MS011103 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61 Identity = 121/156 (77.56%), Postives = 134/156 (85.90%), Query Frame = 0
BLAST of MS011103 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59 Identity = 116/158 (73.42%), Postives = 130/158 (82.28%), Query Frame = 0
BLAST of MS011103 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 161.8 bits (408), Expect = 4.5e-40 Identity = 79/157 (50.32%), Postives = 108/157 (68.79%), Query Frame = 0
BLAST of MS011103 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 78.2 bits (191), Expect = 6.5e-15 Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 0
BLAST of MS011103 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 78.2 bits (191), Expect = 6.5e-15 Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0
BLAST of MS011103 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 78.2 bits (191), Expect = 6.5e-15 Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0
BLAST of MS011103 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14 Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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