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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. TGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAAATGAGAAACGAAAAAAAAGGGAAGAGCAAAATCTCTTTCTCCCACTCTCCCCCATCGCTTCTTCTCTCCCCCCTCTCCTCTCTCTCCGTGTGTTTCCTCTGATTTAGGGCATCGCTTCATAGCGTTTATTCTCTGGGAGTCGTGTTCTACCTGTTGCAGGTACTTGCCGGAGAGAAATA mRNA sequence TGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAAATGAGAAACGAAAAAAAAGGGAAGAGCAAAATCTCTTTCTCCCACTCTCCCCCATCGCTTCTTCTCTCCCCCCTCTCCTCTCTCTCGTTTCCTCTGATTTAGGGCATCGCTTCATAGCGTTTATTTCTGGGAGTCGTGTTCTACCTGTTGCAGGTACTTGCCGGAGAGAAATA Coding sequence (CDS) TGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAAATGAGAAACGAAAAAAAAGGGAAGAGCAAAATCTCTTTCTCCCACTCTCCCCCATCGCTTCTTCTCTCCCCCCTCTCCTCTCTCTCGTTTCCTCTGATTTAGGGCATCGCTTCATAGCGTTTATTTCTGGGAGTCGTGTTCTACCTGTTGCAGGTACTTGCCGGAGAGAAATA Protein sequence WLSPNAYTPKYPSVSQRNEKRKKREEQNLFLPLSPIASSLPPLLSLVSSDLGHRFIAFISGSRVLPVAGTCRREI
Homology
BLAST of MS011095 vs. NCBI nr
Match: KGN49502.1 (hypothetical protein Csa_002734 [Cucumis sativus]) HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16 Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 0 Query: 1 WLSPNAYTPKYPSVSQRNEKRKKREEQNLFLPLS--PIASSL-PPLLSL-VSSDLGHRFI 60 WLSPNAYTPKYPS SQ + +KREEQNLFLPLS PIASSL PPL SL VSSDLGHRF Sbjct: 15 WLSPNAYTPKYPSASQ-GMRNEKREEQNLFLPLSPPPIASSLSPPLPSLFVSSDLGHRFQ 74
Query: 61 AFI-SGSRVLPVAGTCRR 74 AF+ S +LPVAG CRR Sbjct: 75 AFVPPPSSLLPVAGICRR 91
BLAST of MS011095 vs. ExPASy TrEMBL
Match: A0A0A0KMB8 (Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16 Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 0 Query: 1 WLSPNAYTPKYPSVSQRNEKRKKREEQNLFLPLS--PIASSL-PPLLSL-VSSDLGHRFI 60 WLSPNAYTPKYPS SQ + +KREEQNLFLPLS PIASSL PPL SL VSSDLGHRF Sbjct: 15 WLSPNAYTPKYPSASQ-GMRNEKREEQNLFLPLSPPPIASSLSPPLPSLFVSSDLGHRFQ 74
Query: 61 AFI-SGSRVLPVAGTCRR 74 AF+ S +LPVAG CRR Sbjct: 75 AFVPPPSSLLPVAGICRR 91
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN49502.1 | 2.1e-16 | 74.36 | hypothetical protein Csa_002734 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KMB8 | 1.0e-16 | 74.36 | Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..24 |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS011095.1 | MS011095.1 | mRNA |
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