MS011091 (gene) Bitter gourd (TR) v1

Overview


Name	MS011091
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LSD1
Location	scaffold35: 4353068 .. 4357378 (-)
RNA-Seq Expression	MS011091
Synteny	MS011091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGAGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCGGTTCCTCCTCCTGGTATACTTTTTTTCTTATCTATTCTTTTCCCCTCTTTTGGTTGTTCAAGGTGTCATGAAAGTTTTGCAATGGAAGCCACTTTGTATCAGAGCCAGGTTACAGTATCATAAAAGTTATAAAAATAAATGCAATCTGCAAAGTTAAAATATAATCTACTTGACCGACTATTTAGTTTGGGCTGGAGGTAGAATGGACAGACGAGTGATTATTTTGTTTCTTTATTCAAATATGGCATTGAGACAAAATTATTCAAAATAATAGACATTTTAAGTGGCATTCACAACAAATGACAATTTTTATAAAAATCCGCATGGGCTATTGGGATAGGAAAAAGAAAAACATTGACTAGGGTTCTAGAGATGCGTGATCATCATGCAGTTTTTTTTATGTGAGGTCATTAATGTAGTCTCTTTCAACTGAATCTTGAACTTCTCTAATAGCTTTATGTATATTAATAATGGGTAGTAAAGTTATCATCCTATTGGTGAATATGTTTCCTTTCAAATATTAGAGATCTTAATCTGAAAATGGCCTTTTTAAATGGACAGAAAATTCAACTCATTGAAGGATGTTAGGATGGTATAGGTAAAAAAATAAATAGGGACCCCAAGAAGGTTCTATCATGATGTGAACACATAAACTATAAAAAATCATCATTTACAAGAGCATGAGAATTTTTTTTTTTATAAGATTTATCCCAAGTTTCCAACTATTTGGTCTTCGTACCATTCCCATAACATGATTATTTCTTCTTGTAGTGTAAATGTTTCTTTCTAGTTTCTTCTTTTCTGAATGCTAATATCTTCTGTGCATAATTATTGTGTGCATCTTTCTTCTATCTATATTTGAGTAATACCTCAAATTCTCAACCATTATGGGATGACCCAGGGGTCAATAAGGACCAATATAAATAGCAAACGACATAGAGGGAATGGGTTCAAACCATTGGCCACCTACCTAGGATTTAATATCCTACGAGTTTCTTTGTCAACCAAATGTAGTAAGGTCAGACCCCTGATTGGTCGAGGTGCGCAAGCTGGCCGGGACACACTGATATAAAAAGAAATAATACCTCAAATTCTCACAAGAGCCAATTGATAATCATCAAAAGAACTGGACTGTTATTCAGCTCTTGGATGAAGAGATATCTGAAAGACTGTCAATTGATTAAAAGTGTAACATAAGACTGTAAATAGATTTAGAGGATGTATGGAATTTGACTGTGTTTATAGTTCTCTTTGGACCAATGTAACTAACCTTTTTAGGAATTTTCATTTTCTTTTAATTACCAATAATTGGGACTCTTTTGTGTAATTGTGTAATTTGATAGTTTCAAATAGCCCCTCTTTTGTTTTGGCTGTTTTTTTTTTCTCCTTTTATGTTTGGTTAATTTTTTTTTTTTTTGTCTCTTTCATTTTTGTTTTTTTCCCTTTTATAAAAAGAAAAAGTAACATAAGATCCACTTCTAATATTTGCTATATTAAATATGGGAAATTAGTTATAAGACAAGAATTAGGGGTTCATTTGTAGAAGTATTTCAAACAATAAGTAATATACCCGAGGAATAGGCCTTTTCTTGAGTAGGATTACCGTGACCAGAGAAGGATAAAGAAGTCACTACGGTATTCTTCTTGGTGATGTTTTGTGTAGAAGTGATTTTAAGAATTTAGGCAGTCTCTTTTGCAATTGTGATTCTGATAGAGGGTTGTGATATAACCTGCTTCATGAAATTGGAGGGGTTCATTCAGGAGTATATTTCTAAAAGTATATTTCATTTCATAAGGTACCAACTACCAAGAAAATAGCATTGTAATGTATGCTCCTTTGCGACTTTGGGGTCTCGTAGGTTCATCGAGAAGAAGTATGTTTTTTTTTTTTTTAAAAAAAGGAATATGTTTATGTGAAGAGGTTCTAAGCAACTCCCAATGGTGCGGCATGGATGGAGATTTAATTACAAGGTGGAGGCTCTTTGGCTTGATGCCGTTAGGGCTCTCTCAGATTCATACTTAGTTGATAAAGATGCAATTTTATATGGTAGTGGGCAGAATAAATTAATTGAATTAGATTTACTTAGTCACGATGAATATTGTTTTATTAGTTTCTAATGTTATTTTTTATTTCTTGTAAATTGGCCATTAAATTCTGCTGGGGTGTTAAAACGTATCTCCTTGCCTGTTACCATATAAGCCCTGGCAACTAATTTTTAGTCCTTCATAGCTATTTGTCATTGGGTAACTCTTTTGAAGATTTATACCAGAGAGTTGGGCCTTGAATATGCAGGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACAGTGAACCTTGCACCTGGTATAAGAAAATTATCATTGATTTTTAGTTTTTAAAGGATATAATGGATATTTGAATTCGACACTGCTCCCTAAATTTGTTTGAGATTTTTTTTTTTTAGTGAACTAGCAATAACTTAAAAGACTTTGGGTATTGAGATGATTGAATTATTGAGTTTTCCCACTATAATTCTCTCGGGTTTTCTTTCATTTCCTCATATTTCTCTCTTTTCTTCCTTCACTTTTCTTCTTTTTGCCTGTTCCATGCTTCTGTGAAACAAGTTCATAATATCTTTTAAGTAGGTTTTTTTCTTTGCTTGACAACAAAAACGGTTGTGTTGTTACTTGTCAATTCTTTCAAGTACTGTTGCTGTATTTCATTTTTTATATTACTATACAAGATTTGTTCTTAATCTTTTTTTTATTATTATGGTTGCAAGTTGCAACCTACAGGATTTGTTTTTTATGTTCCTTCTTAGGAGTAGTCTTGCTTGGGATATGAAAATTTGCCTTTTCCCAGTTGGGAAGTGGGATCTTATTTGTGCCAATTCTAGTCTTGTTTATGCTGGTTTCTAACTTATGCTATTAATTTTTTTCTTTTTTGAAAGAGAAACATTGATAAACGAAATGTACTAATGTTGGTGAGGGGGAAAAACCCCAAACCACAGGTCACAAAAAAGCCCTCAAATTGACCAAAAGAATTGAAAGATTTAGTATATGCTATTAATTATTAGATGCTCAAATTTTTATTATGTTACAATCGTTAGCTAGATTACTGAGCTGTCATGTTTGGGTGTTGTGACTGTTTAAAAAAAAGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAATGTTGGTGTAAGTATAATCCATTTCTTTTGAGAGGCATCTGAAATTTCTTGATATATTTAGTTAGTTGAGTCGCTGAATGTGATAGTTTGGAAGTATTCTCTTCTCTTGATATCAAGCAAAACTTTCTTCTGTGTGCCTCCCTCATCATTAATTAATATTCTTTATTTTAATTTTGGAAAGCAGCTTAGACTAGTTTCGATGTGGCTTAAGTAAATGTTGACTAGCGTGGGAGGATACAACTAGATTTTGTGGTCAAAACTAAGGTGTTACAGTTTGTAGTAGTCATATACTTGTTTCATTCCCAAATAATCTCCCCACTTTCTGGATGGGTTGATAGGGAATATTAAGGAAGAACCAAAATGTAGAGAACTTGAAAACACACATAAAGAAACCTATATTCAAGACGTTTAGTTTATAAACTTTCCAATAGCCCAAGGTGGTACAGTTATCTTTCTGTCCGTTCATACCTTTTCCATTAATGTCTCTTTGCAGATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCAGTATGTTCTCAAGCTTTTCATTTCTCTTATGACCTTCCTTACCGGCCTCTGCACTGAGTGGGTTTGTAATTCTGATTATACGGCATAATTGATTTGGGATTGTTCATTATTTTCACTTCTTGCAGTCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTAAGTATTGATGCTGTTCATTTGGTTCTTTTCCCTATACCCTCTTTAGAATCGATTCTTCTCTGATTCATTATCAACAATGAAATGTGTCGACTAATACTCTGAATGATAGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGG

mRNA sequence

ATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGAGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCGGTTCCTCCTCCTGGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACAGTGAACCTTGCACCTGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAATGTTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGG

Coding sequence (CDS)

ATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGAGCTACCAATGTATGCTGTGCATTATGCAATACAGTCACCTCGGTTCCTCCTCCTGGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGTCATACAGTGAACCTTGCACCTGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAATGTTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGG

Protein sequence

MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

Homology

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BLAST of MS011091 vs. NCBI nr
Match: XP_022146603.1 (protein LSD1 [Momordica charantia])

HSP 1 Score: 346.3 bits (887), Expect = 1.5e-91
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSMLLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of MS011091 vs. NCBI nr
Match: XP_011658526.1 (vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 236 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 295

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 296 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 355

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 356 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 406

[Close]

BLAST of MS011091 vs. NCBI nr
Match: XP_008439499.1 (PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [Cucumis melo] >KGN49498.1 hypothetical protein Csa_004386 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of MS011091 vs. NCBI nr
Match: KAA0052452.1 (vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 6.4e-90
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

[Close]

BLAST of MS011091 vs. NCBI nr
Match: XP_022925664.1 (vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGT+SSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

[Close]

BLAST of MS011091 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.1e-63
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

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BLAST of MS011091 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-56
Identity = 112/186 (60.22%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARG 60
           MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LICGGCRTLLMY R 
Sbjct: 1   MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60

Query: 61  ATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVR- 120
           A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAPSVKCAIC Y+TN G++ V  
Sbjct: 61  ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120

Query: 121 VPIPVHRRNGTISSGMP-------------PASSSQSQTVVVENPMSVDESGKLVSNVVV 171
            P P+   +G+  +  P             P S  Q+ TVVVENPM+VDE GKLVSNVVV
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV 180

[Close]

BLAST of MS011091 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-55
Identity = 107/169 (63.31%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGA 60
           MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LICGGCRTLLMY R A
Sbjct: 1   MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60

Query: 61  TSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVP 120
           TSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPSVKCAIC ++TN G++ +R  
Sbjct: 61  TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-H 120

Query: 121 IPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTT 169
           +P +  + T  S   P + SQ+ TVVVENPM+VD  GKLVSNVVVGVTT
Sbjct: 121 LPPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTT 168

[Close]

BLAST of MS011091 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-47
Identity = 85/113 (75.22%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+CGGC TLLMY RGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 62  VRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGIS 115
           V+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVKCA+C +VT+VG S
Sbjct: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 175

[Close]

BLAST of MS011091 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.0e-47
Identity = 84/111 (75.68%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+CGGC TLLMY RGATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVG 113
           V+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C +VT+VG
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of MS011091 vs. ExPASy TrEMBL
Match: A0A6J1CZ01 (protein LSD1 OS=Momordica charantia OX=3673 GN=LOC111015765 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 7.4e-92
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRS+LLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSMLLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of MS011091 vs. ExPASy TrEMBL
Match: A0A1S3AZJ7 (protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.2e-91
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of MS011091 vs. ExPASy TrEMBL
Match: A0A0A0KJ18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.2e-91
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of MS011091 vs. ExPASy TrEMBL
Match: A0A5A7U9M7 (Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00490 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.1e-90
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

[Close]

BLAST of MS011091 vs. ExPASy TrEMBL
Match: A0A6J1ECU7 (vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111433013 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGT+SSGMPP+SSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

[Close]

BLAST of MS011091 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-64
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

[Close]

BLAST of MS011091 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-64
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of MS011091 vs. TAIR 10
Match: AT4G20380.3 (LSD1 zinc finger family protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-64
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of MS011091 vs. TAIR 10
Match: AT4G20380.4 (LSD1 zinc finger family protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-64
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of MS011091 vs. TAIR 10
Match: AT4G20380.5 (LSD1 zinc finger family protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.4e-64
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVT 120
           A+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

The following BLAST results are available for this feature:

BLAST of MS011091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146603.1	1.5e-91	99.42	protein LSD1 [Momordica charantia]	[more]
XP_011658526.1	1.7e-90	98.25	vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus]	[more]
XP_008439499.1	1.7e-90	98.25	PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [...	[more]
KAA0052452.1	6.4e-90	98.24	vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. ...	[more]
XP_022925664.1	2.4e-89	96.49	vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata...	[more]

BLAST of MS011091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94077	9.1e-63	66.84	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]
Q6ASS2	4.8e-56	60.22	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
Q2QMB3	3.1e-55	63.31	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q0J7V9	1.8e-47	75.22	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	7.0e-47	75.68	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]

BLAST of MS011091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ01	7.4e-92	99.42	protein LSD1 OS=Momordica charantia OX=3673 GN=LOC111015765 PE=4 SV=1	[more]
A0A1S3AZJ7	8.2e-91	98.25	protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1	[more]
A0A0A0KJ18	8.2e-91	98.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1	[more]
A0A5A7U9M7	3.1e-90	98.24	Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var...	[more]
A0A6J1ECU7	1.2e-89	96.49	vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moscha...	[more]

BLAST of MS011091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20380.2	6.4e-64	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.1	6.4e-64	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.3	6.4e-64	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.4	6.4e-64	66.84	LSD1 zinc finger family protein	[more]
AT4G20380.5	6.4e-64	66.84	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 4..34 e-value: 6.3E-12 score: 42.9 coord: 81..111 e-value: 1.2E-11 score: 42.0 coord: 43..72 e-value: 5.4E-17 score: 59.1
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 7..31 e-value: 3.5E-10 score: 39.5 coord: 84..108 e-value: 7.3E-13 score: 48.1 coord: 46..70 e-value: 7.7E-13 score: 48.0
None	No IPR available	PANTHER	PTHR31747:SF19	LSD1-LIKE PROTEIN	coord: 1..169
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011091.1	MS011091.1	mRNA