MS011089 (gene) Bitter gourd (TR) v1

Overview


Name	MS011089
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein-associated protein
Location	scaffold35: 4338417 .. 4339265 (+)
RNA-Seq Expression	MS011089
Synteny	MS011089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCAAAGAGTTCAAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAGGACGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTTGTGCTCGGCGACTGTGAAGAGTTTCGTAAGCTTCCCCCGGGTAAGGGTAAGAAGACTAATGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTACGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTTAATGCTGCAGCCATGGCTGGCCCTGGTATAGGCCGCGCCGCTGGCAGGGGGATCCCGACTGCTCCTCTGGTTCAGGCTCAGCCTGGTCTTGCTGGCCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTGTACCGCAGCTGTCCGCGCCGCCGATGACATACCCGGCTGCCCCTGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAGGCTCCGCCTCCTGTAGGGAGAGGAATGCCTCCGCCGGGGCCTCCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAGCCATTCCCAGTTCCCCCCCAGTTTGCACAGAGACCCATGGGGCCACCACCAACCGGGCAGGTCATGAGGGGACCGCCACCACCTCCCAGGCCTGGAATGCCTGCTCCACCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTTCCTGTGTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAATCAGCAGCAAAATCAACAGCAA

mRNA sequence

ATGTCGATGTCAAAGAGTTCAAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAGGACGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTTGTGCTCGGCGACTGTGAAGAGTTTCGTAAGCTTCCCCCGGGTAAGGGTAAGAAGACTAATGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTACGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTTAATGCTGCAGCCATGGCTGGCCCTGGTATAGGCCGCGCCGCTGGCAGGGGGATCCCGACTGCTCCTCTGGTTCAGGCTCAGCCTGGTCTTGCTGGCCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTGTACCGCAGCTGTCCGCGCCGCCGATGACATACCCGGCTGCCCCTGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAGGCTCCGCCTCCTGTAGGGAGAGGAATGCCTCCGCCGGGGCCTCCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAGCCATTCCCAGTTCCCCCCCAGTTTGCACAGAGACCCATGGGGCCACCACCAACCGGGCAGGTCATGAGGGGACCGCCACCACCTCCCAGGCCTGGAATGCCTGCTCCACCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTTCCTGTGTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAATCAGCAGCAAAATCAACAGCAA

Coding sequence (CDS)

ATGTCGATGTCAAAGAGTTCAAAGATGCTCCAGTATATTAATTACCGGATGAGGGTCACCATCCAGGACGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTTGTGCTCGGCGACTGTGAAGAGTTTCGTAAGCTTCCCCCGGGTAAGGGTAAGAAGACTAATGAGGAGCGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTACGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTTAATGCTGCAGCCATGGCTGGCCCTGGTATAGGCCGCGCCGCTGGCAGGGGGATCCCGACTGCTCCTCTGGTTCAGGCTCAGCCTGGTCTTGCTGGCCCAGTTCGTGGAGTTGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTGTACCGCAGCTGTCCGCGCCGCCGATGACATACCCGGCTGCCCCTGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAGGCTCCGCCTCCTGTAGGGAGAGGAATGCCTCCGCCGGGGCCTCCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAGCCATTCCCAGTTCCCCCCCAGTTTGCACAGAGACCCATGGGGCCACCACCAACCGGGCAGGTCATGAGGGGACCGCCACCACCTCCCAGGCCTGGAATGCCTGCTCCACCACCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTTCCTGTGTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAGAATCAGCAGCAAAATCAACAGCAA

Protein sequence

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

Homology

[Close]

BLAST of MS011089 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 280/284 (98.59%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPVGRGMPPP  PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515.8 bits (1327), Expect = 2.4e-142
Identity = 279/284 (98.24%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPPG-PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPVGRGMPPPG PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 1.6e-141
Identity = 278/284 (97.89%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP  PPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus])

HSP 1 Score: 511.1 bits (1315), Expect = 5.9e-141
Identity = 276/284 (97.18%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP  PPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 510.0 bits (1312), Expect = 1.3e-140
Identity = 276/282 (97.87%), Postives = 278/282 (98.58%), Query Frame = 0


Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           PP+GRGMPPP  PPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           PAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of MS011089 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.7e-46
Identity = 135/272 (49.63%), Postives = 163/272 (59.93%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QAPPPVGRGMPPPGPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
             PPP+GRG PPPG                   PP   + PMG PPTG        PP  
Sbjct: 181 GPPPPMGRGRPPPG----------------MMAPPPGMRPPMG-PPTGM-------PPGR 238

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP 272
           G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 GAPMGIPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]

BLAST of MS011089 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 138/259 (53.28%), Postives = 163/259 (62.93%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPVGRGMPPP---GPPQFSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPP 240
             PPP+GRG PPP   GPP      PG  PP   P  +PP     PMG PP G  MR   
Sbjct: 181 GPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPG-RGTPMGMPPPG--MR--- 238

Query: 241 PPPRPGMPAPPPRPGMPPP 254
            PP PGM  PPP PGM PP
Sbjct: 241 -PPPPGMRGPPP-PGMRPP 238

[Close]

BLAST of MS011089 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-45
Identity = 137/259 (52.90%), Postives = 163/259 (62.93%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPVGRGMPPP---GPPQFSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPP 240
             PPP+GRG PPP   GPP      PG  PP   P  +PP     PMG PP G  MR   
Sbjct: 181 GPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPG-RGTPMGMPPPG--MR--- 238

Query: 241 PPPRPGMPAPPPRPGMPPP 254
            PP PGM  PPP PG+ PP
Sbjct: 241 -PPPPGMRGPPP-PGLRPP 238

[Close]

BLAST of MS011089 vs. ExPASy Swiss-Prot
Match: P17136 (Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=10116 GN=Snrpb PE=2 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 129/244 (52.87%), Postives = 154/244 (63.11%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPVGRGMPPP---GPPQFSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPP 239
             PPP+GRG PPP   GPP      PG  PP   P  +PP     PMG PP G  MR PP
Sbjct: 181 GPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPG-RGTPMGMPPPG--MRPPP 228

[Close]

BLAST of MS011089 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-44
Identity = 135/274 (49.27%), Postives = 161/274 (58.76%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+      
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----A 180

Query: 181 QAPPPVGRGMPPPGPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PP 240
             PPP+GRG PPPG                           MGPPP  +   GPP   PP
Sbjct: 181 GPPPPMGRGAPPPG--------------------------MMGPPPGMRPPMGPPMGIPP 238

Query: 241 RPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP 272
             G P   P PGM PPP G   + GPP PGM PP
Sbjct: 241 GRGTPMGMPPPGMRPPPPG---MRGPPPPGMRPP 238

[Close]

BLAST of MS011089 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 279/284 (98.24%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPPG-PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPVGRGMPPPG PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.6e-142
Identity = 278/284 (97.89%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP  PPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.9e-141
Identity = 276/284 (97.18%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP  PPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.4e-141
Identity = 276/282 (97.87%), Postives = 278/282 (98.58%), Query Frame = 0


Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPVGRGMPPP-GPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           PP+GRGMPPP  PPQFSAARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           PAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of MS011089 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 8.4e-141
Identity = 275/284 (96.83%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPVGRGMPPPG-PPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPVGRGMPPPG PPQFSAARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of MS011089 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-93
Identity = 215/284 (75.70%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPP 240
            GQ  PP+GRG PPP        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPP
Sbjct: 181 GGQG-PPMGRGPPPP-----YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPP 240

Query: 241 PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ 280
           PP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Sbjct: 241 PPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of MS011089 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-93
Identity = 215/284 (75.70%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPP 240
            GQ  PP+GRG PPP        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPP
Sbjct: 181 GGQG-PPMGRGPPPP-----YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPP 240

Query: 241 PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ 280
           PP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Sbjct: 241 PPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of MS011089 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-93
Identity = 215/284 (75.70%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPP 240
            GQ  PP+GRG PPP        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPP
Sbjct: 181 GGQG-PPMGRGPPPP-----YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPP 240

Query: 241 PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ 280
           PP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Sbjct: 241 PPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of MS011089 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-93
Identity = 215/284 (75.70%), Postives = 226/284 (79.58%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPVGRGMPPPGPPQFSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPP 240
            GQ  PP+GRG PPP        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPP
Sbjct: 181 GGQG-PPMGRGPPPP-----YGMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPP 240

Query: 241 PPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ 280
           PP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Sbjct: 241 PPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of MS011089 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 315.1 bits (806), Expect = 5.8e-86
Identity = 201/283 (71.02%), Postives = 215/283 (75.97%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKG-KKT 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPP KG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPG 180
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP    
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMP---- 180

Query: 181 QAPPPVGRGMPPPGPPQFSAARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPP 240
             PP  G+G PPP          G  PP P P PPQ+   QRPM  PP G +MRGPPPP 
Sbjct: 181 PQPPFAGQGGPPP--------PYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP- 240

Query: 241 RPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ 279
             GM  PPP RPGMPPP  G  P+F PP PGMPP PPN  NQQ
Sbjct: 241 -HGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQ 253

The following BLAST results are available for this feature:

BLAST of MS011089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882444.1	1.8e-142	98.59	small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >...	[more]
XP_022925730.1	2.4e-142	98.24	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]
XP_008439504.1	1.6e-141	97.89	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]
XP_004134546.1	5.9e-141	97.18	small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN4949...	[more]
KAA0052454.1	1.3e-140	97.87	small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ...	[more]

BLAST of MS011089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9N1Q0	5.7e-46	49.63	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
P14678	1.7e-45	53.28	Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=...	[more]
Q9TU67	3.7e-45	52.90	Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=...	[more]
P17136	1.8e-44	52.87	Small nuclear ribonucleoprotein-associated protein B OS=Rattus norvegicus OX=101...	[more]
Q58DW4	2.4e-44	49.27	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=S...	[more]

BLAST of MS011089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ14	1.2e-142	98.24	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662...	[more]
A0A1S3AZK2	7.6e-142	97.89	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KPA9	2.9e-141	97.18	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
A0A5A7UAP6	6.4e-141	97.87	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O...	[more]
A0A6J1IQN3	8.4e-141	96.83	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of MS011089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20440.1	2.9e-93	75.70	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.2	2.9e-93	75.70	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	2.9e-93	75.70	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.4	2.9e-93	75.70	small nuclear ribonucleoprotein associated protein B	[more]
AT5G44500.1	5.8e-86	71.02	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 150..166 score: 32.94 coord: 183..195 score: 36.92 coord: 202..223 score: 40.91 coord: 233..249 score: 40.0
None	No IPR available	GENE3D	2.30.30.100		coord: 1..93 e-value: 9.1E-33 score: 113.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..283
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 1..258
None	No IPR available	PANTHER	PTHR10701:SF14	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN	coord: 1..258
None	No IPR available	CDD	cd01717	Sm_B	coord: 5..85 e-value: 1.50724E-53 score: 166.958
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 e-value: 3.9E-22 score: 89.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 e-value: 7.9E-19 score: 67.1
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIRSF	PIRSF037187	SmB_SmN	coord: 1..274 e-value: 7.3E-76 score: 252.8
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011089.1	MS011089.1	mRNA