MS011008 (gene) Bitter gourd (TR) v1

Overview


Name	MS011008
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	la-related protein 6A
Location	scaffold35: 3558533 .. 3563326 (-)
RNA-Seq Expression	MS011008
Synteny	MS011008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCGATGAGCGTCCGACTCCGTCCTCCGCCGCTGTCGTCTCCTGCCCCGTCGCCGAGTCCATTCCGTCGCCTCCACCGCAAGATCCCGTCGGATCACCTAGTCGCGATATGCCTGAGATTCAATCATTGACATCCGAAGACGATCACGACCACGGAAACAGGGAGAATCACGATCACGCCCACGAACACGCAGTTAGGGCCGCTGTTCTCTTGGAGGATCTGAAGCACAGGATCATTAAGCAGGTAAACTCTGCCTCCTCCACCATCCTCACTCTCCTCCGCCCTTCATATTTGACCCTCGAATTTCTTTGCTTCGTTAGGTCTGGCATGCGGTTTTTTTAATTCTCTATCTGTATACGTAGAGCAGATACTGGCGTTAGAAATTTATTGGTTCTGTATGCATTGAAATTGCTGTGATTCAGAAGCCTTGTTAGGATTTGAGAATTAGTGTGCGAATCCGTTTACCGTCGTGGACATATATTTTATTTTCTATATGTGACCTTCGTGGATATTAGAACGTAGGGAAGCTTATGGTTTGATTATCAACTGCAAGGGGGATATGATTTCAGTTGATTATTTCACGGTTGTGATATCATGGAGTTGGTGGTGTGTTACACCACTATTAGCTTGGTCTTTTTGATGCAAGACCTCAATAGAGCATTTAGATTATGGAAATGTAGATTTTACTTCGTTTAGTTTTTCTTTAATTTTGTAAAGCATATTATTTTAGAGTACGTGTTCTTTATGCTAATTCTAAATGTCGTCGCAGGTAGAGTACTACTTCAGCGATGAAAACTTGCCCACTGATAAGCACTTGATGGGAATAATTAAGAAAAACAAGGAAGGTTTTGGTATGTTACTTGGCCATTAATAATAATTTGATATGGTTCTTCATTTTTATGTAGATTTTGTTATCTTTCAATGGAAATGAAAACTCCCAATGGTATTGAAATTCTCAAGGGGTTCAAGAAGCATAACAAGTCATGAGAGAATTTAGTTTCTTTATGATTTTTATGAAAATCTCAACTATGGGAATTAAATAAATAGTTCCAAGAATGCTTTGGACGAATATTCTGCCTAGCCACACTTGAACAAAACCATCAGAAAGAAGTTTTTTGTACTTTTAAGTATCTTCTCTGTTGTATGACCATGACTTATGGAAACCAAAGGCTTTGTATTGTTTTTCTTAGCTCTATAGCAGGGGCTTCAGTTCTTAATTTTTAACCTTTCAGATCTTAATTTTAAACCGGTAAACTTTAGAATCAAACAGGCAACAAAGATTATTACAAAAATGATGAAACCGAAGGGATGGTTCAGAAGCTGTGACTTGTGACTCCTTGGAGACTTGGAGTTCAATCATCTGAAATACCCGAACATGGCTCCACATAGTATTTTATTATTCGCTTTCCAGCATCTTGTTAATATGGAAGAGTTCTGGGGGTGGCAGCCTTGCATGACTTATTAATTTTCTTTTTCATATTATTTCCCAGAACTTTGGAATTAACATCAATTTTATAGAAAGGTCACTTTGCATGACTAGAAAAAGAGATGGGATGATGAGCCATGCAGTTTTTTCTGACAAGTTGCATTACTTGGACATTTCCTGGTGCAGCCAGATTTGGATCTGCTGTGCTGCCGAACTTCATGGACTGCTCTGAATGAAGTTCAATTGATTGTTGACAGATCCCTTTTCTATTTATGAAATTATGGCCTTTGCATGATTTTTCATGTAATGGACTAGAACGATATAACAATAAACTTTTTTATCTCACAATGCTTCTAGCCTTTGTTAATATTCAACATGGCCTGTTTGGCTTGTTTCCTTCCGCGGTATATAATAAATATAAATATCTTGAAGTAAAGTCGAAGCATGAAAAGGTTGCATATTCTAGCTCAAGCACAGTGCACATAGTTATTATATGGCTCTGCACTTGTTTCTTTATATGCTCGTTTTTTGTATTTTTATATACATTTGATGATTGAAAATAAGACTGTTTACCTCATTTTATTACAATTTGATCATCTTACTTCATGTTCTTTGCTCTACTACTTTTTTTTTTTTTTTTTTTTGGTTGTCTGGGGATTCTGATTTTTCCTTATATCTTGTAGTAAGCAGTTGTATTTCTATCAATGCATAAATAAGTTGAAATGTTTCCTCTTTATTTGTCTAGTTCCTATAGCTCTTATTGCTGCCTTCAGGAGAATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTGCTTGTAAGATACTCCATGTTCCCTTTTAAAATGTTGCAACCAAGGCCTCTTTTTGTATGAGCACATGAGCACTCACTAATTTATCTGCCAACTACAGGTTGTGAGTCCTAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCTGAGACTAGGGATTCGAAGGTACATATTTGTATACTGTGAACTTGTTTGTTGATGTGTAACGTATGTTAACTTTATGACATTTCTATGTGGGGTATAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCCAACGAATTTTCGGAGCTGCTGGACGGTATGCTATCCTCATTTCCAAAGCTATGTTTTCATAAAACTATTTTTCCCTTTAGACTTTAGTGCATGAAGAATTATTTTCTATTTTTAGCGTAAGAAGTATTACCATTTGTGACCCACATGCGGCAGACAAGTCGGGGAAAAGTGGGAAGGGCGATGTGCTGATCAGTAATAAGGTATATTATGAAACCAACTTATAAAATAAAATATTTCAGTTTTTTCTTAAAGGGGACATTATGGCTATGTATTTGGGGTTATTACTCATGCTTTTCATTTGAGCTCTAGTAAAGAAAGTGGTTTCTGTGGAAGGACATTGTGCTTTCTTCCGTGTTTCTTTATATTCACACACATTAACCATGCAAGAAGTGTTTTCTTTCTCTTTTCTTTTATTTCTTTTTCCCGTATGTGAAGAGGAAAACTATGGATAAGAGTTTCTTTGTCATCACCTTTTCACAATCTATTTTTGTTTTAATTCCTAATTCTAAGAAAAAAATATATTCCCCTTGTCTTTTGAGCTGAGCTGAGGAAAACGTGAAAATTTTATAATTTATGAGATTTACAAGCGTTAAGAGAGAATAGAGAGTAAGTAAGGTGAAAAAGAGGCTATAAGTAGGCCGTTTGCTATTGCTAGTTGGGCTGCTCGACCTGCCACAGGCGCATCCATGGATTCTATGGATACTTTGCGCTTAAAGGCTTCTATTATTCTGGAGTCATATTTGGATTCCCTTACTCGTCTGGCCTTTTTGATCTTTCGCAAAGCTTGGATAAAAGCCTGATTTTCCTAAATATTGGCTAGCTTTTTGTCAAAATCATAGCAAGCAAATTACATTGTGGTGAGAGGACTTTATGATAGTTGGGTAGGAAAGTTAGGTAGGAAATGAAAACAAAATGAAGAATGGAACCAAATGGTTCTCTTTCACCAGACTGAATTTTTGTGGGAAGTAGTAGGTTGGGACCTAAAAATAAGGAGGGGGATTATTACAATGCTTGGGTTTGATAATGCCGGTGCAGAGAAAATTATACGTGTGTCACCGTTCAATACAGCATGTTGATTGAACTTCTGAGTATCCTATTCTGTTCCTTAATATAGAAGTGAAGAGAAGAAAGCAACAATGTCCATTGATTTTTTTTGGCTGGTGCCATGTTTATGATAAATAGTAGTTGGACAATTTAGCTACGTGTCGACTTATTCAATTGTCCTTTTTCTTGGTTACTATGTACAGTTACATGCCCTTGTGGAGTATGAGACTTTTGAAGCTTCTGAGAAAGCTGTGAGTGATCAGATCTATGCCATTTGCCTTAAACTTAACAATTTTACTATGTTTGAGTTGATATCGATAGTCAATTTTCTAATTCTTCATTAGGTGGCAACTTTAAATGATGAGCGAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTTAAGCATCTGGTACTGTCCTTCACTTTACTTATATGTCTAGTTGAAGGGTATTTACAATACAGTTCTCAACTTCAGAGTAAGCATGGCCAGAGGAAACAACACCGGAGAGGATCTGATCCAGAAAAGAACAGCACCGGACGAATAACTGAACAAAATGGGGATGAAGAAATTCAGAACATAGTTGACCATCATGATGATGTGCCTGATGAGGAGGTTAATGTTGCTCTTCTACATGTCTATTAAATTTGTCGGTTATTTTTAAAATTTGTTGATTAATTATTCTGAATATTTTTCTTCCAACTTCCTCGGGACCAGTCGGAGTCCCCAGTAATGTGATTACTATGTGATTGCATTGAGAGAAACTTGGGAGTTTACCTAGCACTCGGAACCTAAAACGTGAAATTTTCTATGAGATGTGAATGCAAGGAAAAGTTTGTTGTAATAACAATATCAAGTTTGCCAATCTTAGGAGGGCGATCATCAAACCAAGGACAAACATGGGCATAGAGGTCGAAATCAAAATCAAGGACGAACAAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGTATACTGATCTGCTCACCTCATTGTAGATTTCATGTTATTAAGAATTTAGCCGCCTAATATTTTGCCCTCCTCTAGGCCATGGAACTACTACATCCTCTGCTCATCCCGTTGAACTCTCGAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGATTCACAATGGGACGTGGACGACCTCCAACCTCGAACCAGAGTTCA

mRNA sequence

ATGGCCGGCGATGAGCGTCCGACTCCGTCCTCCGCCGCTGTCGTCTCCTGCCCCGTCGCCGAGTCCATTCCGTCGCCTCCACCGCAAGATCCCGTCGGATCACCTAGTCGCGATATGCCTGAGATTCAATCATTGACATCCGAAGACGATCACGACCACGGAAACAGGGAGAATCACGATCACGCCCACGAACACGCAGTTAGGGCCGCTGTTCTCTTGGAGGATCTGAAGCACAGGATCATTAAGCAGGTAGAGTACTACTTCAGCGATGAAAACTTGCCCACTGATAAGCACTTGATGGGAATAATTAAGAAAAACAAGGAAGGTTTTGTTCCTATAGCTCTTATTGCTGCCTTCAGGAGAATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTGCTTGTTGTGAGTCCTAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCTGAGACTAGGGATTCGAAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCCAACGAATTTTCGGAGCTGCTGGACGCGTAAGAAGTATTACCATTTGTGACCCACATGCGGCAGACAAGTCGGGGAAAAGTGGGAAGGGCGATGTGCTGATCAGTAATAAGTTACATGCCCTTGTGGAGTATGAGACTTTTGAAGCTTCTGAGAAAGCTGTGGCAACTTTAAATGATGAGCGAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTTAAGCATCTGGTACTGTCCTTCACTTTACTTATATGTCTAGTTGAAGGGTATTTACAATACAGTTCTCAACTTCAGAGTAAGCATGGCCAGAGGAAACAACACCGGAGAGGATCTGATCCAGAAAAGAACAGCACCGGACGAATAACTGAACAAAATGGGGATGAAGAAATTCAGAACATAGTTGACCATCATGATGATGTGCCTGATGAGGAGGTTAATGTTGCTCTTCTACATGAGGGCGATCATCAAACCAAGGACAAACATGGGCATAGAGGTCGAAATCAAAATCAAGGACGAACAAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGCCATGGAACTACTACATCCTCTGCTCATCCCGTTGAACTCTCGAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGATTCACAATGGGACGTGGACGACCTCCAACCTCGAACCAGAGTTCA

Coding sequence (CDS)

ATGGCCGGCGATGAGCGTCCGACTCCGTCCTCCGCCGCTGTCGTCTCCTGCCCCGTCGCCGAGTCCATTCCGTCGCCTCCACCGCAAGATCCCGTCGGATCACCTAGTCGCGATATGCCTGAGATTCAATCATTGACATCCGAAGACGATCACGACCACGGAAACAGGGAGAATCACGATCACGCCCACGAACACGCAGTTAGGGCCGCTGTTCTCTTGGAGGATCTGAAGCACAGGATCATTAAGCAGGTAGAGTACTACTTCAGCGATGAAAACTTGCCCACTGATAAGCACTTGATGGGAATAATTAAGAAAAACAAGGAAGGTTTTGTTCCTATAGCTCTTATTGCTGCCTTCAGGAGAATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTGCTTGTTGTGAGTCCTAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCTGAGACTAGGGATTCGAAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCCAACGAATTTTCGGAGCTGCTGGACGCGTAAGAAGTATTACCATTTGTGACCCACATGCGGCAGACAAGTCGGGGAAAAGTGGGAAGGGCGATGTGCTGATCAGTAATAAGTTACATGCCCTTGTGGAGTATGAGACTTTTGAAGCTTCTGAGAAAGCTGTGGCAACTTTAAATGATGAGCGAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTTAAGCATCTGGTACTGTCCTTCACTTTACTTATATGTCTAGTTGAAGGGTATTTACAATACAGTTCTCAACTTCAGAGTAAGCATGGCCAGAGGAAACAACACCGGAGAGGATCTGATCCAGAAAAGAACAGCACCGGACGAATAACTGAACAAAATGGGGATGAAGAAATTCAGAACATAGTTGACCATCATGATGATGTGCCTGATGAGGAGGTTAATGTTGCTCTTCTACATGAGGGCGATCATCAAACCAAGGACAAACATGGGCATAGAGGTCGAAATCAAAATCAAGGACGAACAAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGCCATGGAACTACTACATCCTCTGCTCATCCCGTTGAACTCTCGAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGATTCACAATGGGACGTGGACGACCTCCAACCTCGAACCAGAGTTCA

Protein sequence

MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHDHAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVATLNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNSTGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGHRGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS

Homology

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BLAST of MS011008 vs. NCBI nr
Match: XP_022146647.1 (la-related protein 6A [Momordica charantia])

HSP 1 Score: 732.3 bits (1889), Expect = 2.4e-207
Identity = 380/411 (92.46%), Postives = 381/411 (92.70%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD
Sbjct: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
           HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR
Sbjct: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLH LVEYETFEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHVLVEYETFEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNS 300
           LNDERDWRNGMRVKPLKHL                      SKHGQRKQHRRGSDPEKNS
Sbjct: 241 LNDERDWRNGMRVKPLKHL----------------------SKHGQRKQHRRGSDPEKNS 300

Query: 301 TGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGHRGRNQNQGRTRRQK 360
           TGR+TEQNGDEEIQNIVDHHDDVPDEE       EGDHQTKDKHGHRGRNQNQGRTRRQK
Sbjct: 301 TGRVTEQNGDEEIQNIVDHHDDVPDEE-------EGDHQTKDKHGHRGRNQNQGRTRRQK 360

Query: 361 YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 412
           YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 382

[Close]

BLAST of MS011008 vs. NCBI nr
Match: XP_038882123.1 (la-related protein 6A [Benincasa hispida])

HSP 1 Score: 610.5 bits (1573), Expect = 1.0e-170
Identity = 328/425 (77.18%), Postives = 348/425 (81.88%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE PT SS A VS  VAESI SPPP+DPVGSPSRD+PE QSL SEDDHD G RE+HD
Sbjct: 1   MAGDEPPTTSSNAAVSSSVAESILSPPPRDPVGSPSRDVPETQSLISEDDHDQGPRESHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
           H HE AV+ AVL EDLK RI+KQVEYYFSDENLPTDKHL+G+IKKNKEGFVPIA+IAAF+
Sbjct: 61  HGHEPAVKPAVLPEDLKQRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLTQDHSFI AALRESSVLV+S NGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFITAALRESSVLVISSNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENI+RIFGAAGR+RSITICDPH  +K GKS KGDVLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIKRIFGAAGRIRSITICDPHVVEKLGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNS 300
           LNDE+DWRNGMRVKPLKHL                      SKHGQRKQH RG DP+KNS
Sbjct: 241 LNDEQDWRNGMRVKPLKHL----------------------SKHGQRKQHWRGPDPDKNS 300

Query: 301 TGRI--------------TEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGH 360
           TGRI              T+QNGDEEI N+ +HHDDVPDEE       EGDHQ KDKHGH
Sbjct: 301 TGRITDQSGPDKNIPGRTTDQNGDEEIHNVNEHHDDVPDEE-------EGDHQHKDKHGH 360

Query: 361 RGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPT 412
           RGR  NQGRTRRQKYKGVNGMGHGTTT SAH +ELSKPPPGPKMPDGTRGFTMGRGRPPT
Sbjct: 361 RGR--NQGRTRRQKYKGVNGMGHGTTT-SAHHIELSKPPPGPKMPDGTRGFTMGRGRPPT 393

[Close]

BLAST of MS011008 vs. NCBI nr
Match: KAA0052548.1 (la-related protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 600.1 bits (1546), Expect = 1.4e-167
Identity = 328/427 (76.81%), Postives = 354/427 (82.90%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE PT SS A VS PVA+SI SPPPQDPVGSPSRD+PEIQSL S+DDHD G+REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
             HE A +AAVL EDLK RI   VEYYFSDENLP+DK+L+G+IKKNKEG+VPIA+IA+F+
Sbjct: 61  QGHEPAAKAAVLPEDLKQRI---VEYYFSDENLPSDKYLLGLIKKNKEGYVPIAIIASFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLT D SFI AALRESSVLVVS NGKKVKRLHPI LPETRDSKLFTILVENLPEDHS
Sbjct: 121 RMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLPETRDSKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENI+RIFG AGR+RSITICDPH  DK GKS KGDVLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLL--ICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEK 300
           LNDE+DWRNGMRVKPLKH+VL    L    L+  Y Q S QLQSKHGQRKQH RG +P+K
Sbjct: 241 LNDEQDWRNGMRVKPLKHMVLYLISLAFFKLIVFYSQCSFQLQSKHGQRKQHWRGPEPDK 300

Query: 301 NSTGRI--------------TEQNGDEEIQNIV-DHHDDVPDEEVNVALLHEGDHQTKDK 360
           NS+GRI              T+QNGDEEI N+V +HHD VPDEE       EGDHQ KDK
Sbjct: 301 NSSGRIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEE-------EGDHQHKDK 360

Query: 361 HGHRGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGR 411
           HGHRG  QNQGRTRRQKYKGVNGMGHGTTTS+ H +ELSKPPPGPKMPDGTRGFTMGRGR
Sbjct: 361 HGHRG--QNQGRTRRQKYKGVNGMGHGTTTST-HHIELSKPPPGPKMPDGTRGFTMGRGR 414

[Close]

BLAST of MS011008 vs. NCBI nr
Match: XP_023002906.1 (la-related protein 6A isoform X1 [Cucurbita maxima])

HSP 1 Score: 597.0 bits (1538), Expect = 1.2e-166
Identity = 324/425 (76.24%), Postives = 347/425 (81.65%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE P+ +S A VSC V ESIPSP  QDPVGSPS D+PEIQSLTSEDDH+ G+  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
               H VRAAVL EDLKHRIIKQVEYYFS+ENLPTDK+++G+IKKNKEGFVP+ALIAAF+
Sbjct: 61  ----HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLT+DHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGR+R ITICDPH  +KSGKS KG VLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSD----- 300
           LNDERDWRNG+RVKP KHLV                      KHGQ+KQH R S+     
Sbjct: 241 LNDERDWRNGVRVKPFKHLV----------------------KHGQKKQHWRLSNPDKNG 300

Query: 301 ---------PEKNSTGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGH 360
                    P+KNSTGR T+QN DEEIQNI +HH+DVPDEEVN AL  EGDHQ KDKH H
Sbjct: 301 TGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDVPDEEVNSAL--EGDHQHKDKHEH 360

Query: 361 RGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPT 412
           RGR  NQGRTRRQKYKGVNGMGHGTTT SAH +EL KPPPGPKMPDGTRGFTMGRGRP T
Sbjct: 361 RGR--NQGRTRRQKYKGVNGMGHGTTT-SAHHIELPKPPPGPKMPDGTRGFTMGRGRPAT 394

[Close]

BLAST of MS011008 vs. NCBI nr
Match: XP_022926362.1 (la-related protein 6A isoform X1 [Cucurbita moschata])

HSP 1 Score: 592.8 bits (1527), Expect = 2.3e-165
Identity = 322/425 (75.76%), Postives = 346/425 (81.41%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE P+ +S A VSC V ESIPS   QDPVGSPS D+PEIQS +SEDDH+ G+  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
               HAVRAAVL EDLK RIIKQVEYYFS+ENLPTDK+++G+IKKNKEGFVP+A+IAAF+
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGR++SITICDPH  +KSGKS KG VLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSD----- 300
           LNDE+DWRNGMRVKP KHLV                      KHGQ+KQH R SD     
Sbjct: 241 LNDEQDWRNGMRVKPFKHLV----------------------KHGQKKQHWRVSDPDKNG 300

Query: 301 ---------PEKNSTGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGH 360
                    P+KNSTGR T+QN DEEIQNI +HH+DVPDEEVN AL  EGDHQ KDKH H
Sbjct: 301 TGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDVPDEEVNFAL--EGDHQHKDKHRH 360

Query: 361 RGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPT 412
           RGR  NQGRTRRQKYKGVN MGHGTTT SAH +EL KPPPGPKMPDGTRGFTMGRGRPPT
Sbjct: 361 RGR--NQGRTRRQKYKGVNAMGHGTTT-SAHHIELPKPPPGPKMPDGTRGFTMGRGRPPT 394

[Close]

BLAST of MS011008 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 6.5e-91
Identity = 212/439 (48.29%), Postives = 274/439 (62.41%), Query Frame = 0


Query: 5   ERPTPSSAAVVSCPVAESIPSPPPQD--------PVGSPSRD----MPEIQSLT-SEDDH 64
           E P+ S A  +  P   +     PQ         PV   S D    + EI +L+ S+DD 
Sbjct: 13  ESPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDF 72

Query: 65  DHGNRENHDHAHEHAVR------AAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKK 124
           DH      D   +H           V +++L  +II+QVEYYFSDENLPTDK L+  +K+
Sbjct: 73  DHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKR 132

Query: 125 NKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDS 184
           NK+GFVPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS + KKVKRL   PLPE RD 
Sbjct: 133 NKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLS--PLPEIRDP 192

Query: 185 KLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHAL 244
           K+FT+LVENLPEDHS ENI+ IFG AG ++S++ICDP+A ++S K GK +  I  +LHA 
Sbjct: 193 KIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 252

Query: 245 VEYETFEASEKAVATLNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHG 304
           VEYET EA+EKA ATLN+E+DWRNG+RVK L+                     Q   K  
Sbjct: 253 VEYETVEAAEKAAATLNNEQDWRNGLRVKLLE---------------------QAAGKFA 312

Query: 305 QRKQHRRGSDPEKNSTGRITEQNGDE------EIQNIVDHHDDVPDEEVNVALLHEGDHQ 364
           QR+  RR  D EK++TGR+ +Q G E      E QN   HH D P ++       +G + 
Sbjct: 313 QRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADD-------DGGNH 372

Query: 365 TKDKHGHRGRNQNQGRTRRQKYKGVNGMGHGTTTSSA----HPVELSKPPPGPKMPDGTR 412
            KDK+G++GR   QG  RRQ ++G NG+GHGT +SS+    HPVE+SK PPGP+MPDGTR
Sbjct: 373 QKDKNGNKGRVVGQG--RRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTR 419

[Close]

BLAST of MS011008 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.7e-44
Identity = 127/346 (36.71%), Postives = 187/346 (54.05%), Query Frame = 0


Query: 71  VLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFRRMKKLTQDHS 130
           +L +DL+ +I+KQVEY F+D +L  ++ +   I K+ EG+VP++ IA+ +++K LT +H 
Sbjct: 139 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 198

Query: 131 FIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHSEENIQRIFGA 190
            ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IFG 
Sbjct: 199 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 258

Query: 191 AGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVATLNDERDWRNG 250
            G V++I IC  H  + +    KGD L+SNK+HAL+EY+    ++KAV  LNDER+WR G
Sbjct: 259 VGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKG 318

Query: 251 MRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNSTGRITEQNGD 310
           +RV+          LL C  +  L              ++RR  D      G +     D
Sbjct: 319 LRVR---------LLLRCSPKSVL--------------KNRRNFD------GILI----D 378

Query: 311 EEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGHRGRNQNQGRTRRQKYKGVNG--MG 370
           +E+ +     D          L ++GD         +GR + +GR+ R    G  G   G
Sbjct: 379 DELPSYESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFG 438

Query: 371 HGTTTSSAHPV----ELSKP---PPGPKMPDGTRGFTMGRGRPPTS 408
            G   S   P     E S P     GP+MPDGTRGFTMGRG+P  S
Sbjct: 439 IGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of MS011008 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 6.2e-41
Identity = 132/397 (33.25%), Postives = 200/397 (50.38%), Query Frame = 0


Query: 49  DDHDHGNREN-HDHAHEHAVRAAV-----LLEDLKHRIIKQVEYYFSDENLPTDKHLMGI 108
           D  DH  RE+ +D   E     ++     L ED   +I+ QVEYYFSD NL T  HLM  
Sbjct: 160 DRRDHSKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRF 219

Query: 109 IKKNKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPET 168
           I K+ EG+VPI ++A+F+++K +  ++S +AA L+ S+ L VS +GKKV+R+ PI     
Sbjct: 220 ICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAI 279

Query: 169 RDSKLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPH-----AADKSGKSGKGD-V 228
            + +   I+ ENLPEDH  +N+ +IF   G V++I  C P      A   +  + K D  
Sbjct: 280 EELQSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGT 339

Query: 229 LISNKLHALVEYETFEASEKAVATLNDERDWRNGMRVK-PLKHLVLSFTLLICLVEGYLQ 288
           L SNK+HA VEYE  E +E+AV  L++  +WR+G++V+  LKH                Q
Sbjct: 340 LFSNKVHAFVEYEIVELAERAVTELSEAGNWRSGLKVRLMLKH----------------Q 399

Query: 289 YSSQLQSKHGQRKQHRRGSDPEKNSTGRITEQNGDEEIQNIVDHHDDVPDEE-------- 348
                Q +   RK H    + E++      +Q  +++  +     D    E+        
Sbjct: 400 TKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGN 459

Query: 349 VNVALLHEGDHQTKDK-----HGHRGRNQNQGRTRRQKYKGVNGMGH---------GTTT 405
              A   +G ++ + K       H+ +NQN   +  Q +   NG G+         GT  
Sbjct: 460 EKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNH-NGRGNHHHHHHHQVGTQP 519

[Close]

BLAST of MS011008 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-20
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 80  IIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFRRMKKLTQDHSFIAAALRES 139
           I KQV+++F D NL  DK L   I+K+++G+V I+L+ +F +MKKLT D   IA AL+ S
Sbjct: 32  IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91

Query: 140 SVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHSEENIQRIFGAAGRVRSITI 199
           SV+ +   G +++R  P+     +D +  T+ VE LP++ +   I+R+FG  G V  I+I
Sbjct: 92  SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151

Query: 200 CDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVATLND 244
             PH   KS    KG         A VE+ET E + KA+  LN+
Sbjct: 152 --PHY--KSTGDPKG--------FAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of MS011008 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.8e-20
Identity = 66/188 (35.11%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 57  ENHDHAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALI 116
           E  D+  +   R   LL D+K    KQVE++F D NL  D+ +  II+++++G++ IA++
Sbjct: 27  EKKDNEKKKRSRVKQLLSDVK----KQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVL 86

Query: 117 AAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPI-PLPETRDSKLFTILVENL 176
             F RMK LT D   IA AL+ S+++ V+  G +++R  P+   P+  DS+  T+ VE L
Sbjct: 87  TTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPKDVDSR--TVYVELL 146

Query: 177 PEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASE 236
           P+  +   ++R+F   G V  I+I       KS +  KG         A VE+ET E ++
Sbjct: 147 PKTVTHIWLERVFSKCGHVVYISI----PRYKSTRHSKG--------FAFVEFETQEQAQ 196

Query: 237 KAVATLND 244
           KAV  LN+
Sbjct: 207 KAVEMLNN 196

[Close]

BLAST of MS011008 vs. ExPASy TrEMBL
Match: A0A6J1D058 (la-related protein 6A OS=Momordica charantia OX=3673 GN=LOC111015798 PE=4 SV=1)

HSP 1 Score: 732.3 bits (1889), Expect = 1.2e-207
Identity = 380/411 (92.46%), Postives = 381/411 (92.70%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD
Sbjct: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
           HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR
Sbjct: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLH LVEYETFEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHVLVEYETFEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNS 300
           LNDERDWRNGMRVKPLKHL                      SKHGQRKQHRRGSDPEKNS
Sbjct: 241 LNDERDWRNGMRVKPLKHL----------------------SKHGQRKQHRRGSDPEKNS 300

Query: 301 TGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGHRGRNQNQGRTRRQK 360
           TGR+TEQNGDEEIQNIVDHHDDVPDEE       EGDHQTKDKHGHRGRNQNQGRTRRQK
Sbjct: 301 TGRVTEQNGDEEIQNIVDHHDDVPDEE-------EGDHQTKDKHGHRGRNQNQGRTRRQK 360

Query: 361 YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 412
           YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 YKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 382

[Close]

BLAST of MS011008 vs. ExPASy TrEMBL
Match: A0A5A7UBI5 (La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001510 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 6.8e-168
Identity = 328/427 (76.81%), Postives = 354/427 (82.90%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE PT SS A VS PVA+SI SPPPQDPVGSPSRD+PEIQSL S+DDHD G+REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
             HE A +AAVL EDLK RI   VEYYFSDENLP+DK+L+G+IKKNKEG+VPIA+IA+F+
Sbjct: 61  QGHEPAAKAAVLPEDLKQRI---VEYYFSDENLPSDKYLLGLIKKNKEGYVPIAIIASFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLT D SFI AALRESSVLVVS NGKKVKRLHPI LPETRDSKLFTILVENLPEDHS
Sbjct: 121 RMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLPETRDSKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENI+RIFG AGR+RSITICDPH  DK GKS KGDVLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLL--ICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEK 300
           LNDE+DWRNGMRVKPLKH+VL    L    L+  Y Q S QLQSKHGQRKQH RG +P+K
Sbjct: 241 LNDEQDWRNGMRVKPLKHMVLYLISLAFFKLIVFYSQCSFQLQSKHGQRKQHWRGPEPDK 300

Query: 301 NSTGRI--------------TEQNGDEEIQNIV-DHHDDVPDEEVNVALLHEGDHQTKDK 360
           NS+GRI              T+QNGDEEI N+V +HHD VPDEE       EGDHQ KDK
Sbjct: 301 NSSGRIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEE-------EGDHQHKDK 360

Query: 361 HGHRGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGR 411
           HGHRG  QNQGRTRRQKYKGVNGMGHGTTTS+ H +ELSKPPPGPKMPDGTRGFTMGRGR
Sbjct: 361 HGHRG--QNQGRTRRQKYKGVNGMGHGTTTST-HHIELSKPPPGPKMPDGTRGFTMGRGR 414

[Close]

BLAST of MS011008 vs. ExPASy TrEMBL
Match: A0A6J1KMM2 (la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=4 SV=1)

HSP 1 Score: 597.0 bits (1538), Expect = 5.8e-167
Identity = 324/425 (76.24%), Postives = 347/425 (81.65%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE P+ +S A VSC V ESIPSP  QDPVGSPS D+PEIQSLTSEDDH+ G+  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
               H VRAAVL EDLKHRIIKQVEYYFS+ENLPTDK+++G+IKKNKEGFVP+ALIAAF+
Sbjct: 61  ----HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLT+DHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGR+R ITICDPH  +KSGKS KG VLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSD----- 300
           LNDERDWRNG+RVKP KHLV                      KHGQ+KQH R S+     
Sbjct: 241 LNDERDWRNGVRVKPFKHLV----------------------KHGQKKQHWRLSNPDKNG 300

Query: 301 ---------PEKNSTGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGH 360
                    P+KNSTGR T+QN DEEIQNI +HH+DVPDEEVN AL  EGDHQ KDKH H
Sbjct: 301 TGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDVPDEEVNSAL--EGDHQHKDKHEH 360

Query: 361 RGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPT 412
           RGR  NQGRTRRQKYKGVNGMGHGTTT SAH +EL KPPPGPKMPDGTRGFTMGRGRP T
Sbjct: 361 RGR--NQGRTRRQKYKGVNGMGHGTTT-SAHHIELPKPPPGPKMPDGTRGFTMGRGRPAT 394

[Close]

BLAST of MS011008 vs. ExPASy TrEMBL
Match: A0A6J1EEB2 (la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 1.1e-165
Identity = 322/425 (75.76%), Postives = 346/425 (81.41%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE P+ +S A VSC V ESIPS   QDPVGSPS D+PEIQS +SEDDH+ G+  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
               HAVRAAVL EDLK RIIKQVEYYFS+ENLPTDK+++G+IKKNKEGFVP+A+IAAF+
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENIQRIFGAAGR++SITICDPH  +KSGKS KG VLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSD----- 300
           LNDE+DWRNGMRVKP KHLV                      KHGQ+KQH R SD     
Sbjct: 241 LNDEQDWRNGMRVKPFKHLV----------------------KHGQKKQHWRVSDPDKNG 300

Query: 301 ---------PEKNSTGRITEQNGDEEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGH 360
                    P+KNSTGR T+QN DEEIQNI +HH+DVPDEEVN AL  EGDHQ KDKH H
Sbjct: 301 TGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDVPDEEVNFAL--EGDHQHKDKHRH 360

Query: 361 RGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPPT 412
           RGR  NQGRTRRQKYKGVN MGHGTTT SAH +EL KPPPGPKMPDGTRGFTMGRGRPPT
Sbjct: 361 RGR--NQGRTRRQKYKGVNAMGHGTTT-SAHHIELPKPPPGPKMPDGTRGFTMGRGRPPT 394

[Close]

BLAST of MS011008 vs. ExPASy TrEMBL
Match: A0A1S3AYU2 (la-related protein 6A OS=Cucumis melo OX=3656 GN=LOC103484374 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.4e-165
Identity = 321/425 (75.53%), Postives = 346/425 (81.41%), Query Frame = 0


Query: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60
           MAGDE PT SS A VS PVA+SI SPPPQDPVGSPSRD+PEIQSL SEDDHD G+REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISEDDHDQGSRENRD 60

Query: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120
             HE AV+AAVL EDLK RI+KQVEYYFSDENLP+DK+L+G+IKKNKEG+VPIA+IA+F+
Sbjct: 61  QGHEPAVKAAVLPEDLKQRIVKQVEYYFSDENLPSDKYLLGLIKKNKEGYVPIAIIASFK 120

Query: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180
           RMKKLT D SFI AALRESSVLVVS NGKKVKRLHPI LPETRDSKLFTILVENLPEDHS
Sbjct: 121 RMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLPETRDSKLFTILVENLPEDHS 180

Query: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVAT 240
           EENI+RIFG AGR+RSITICDPH  DK GKS K DVLISNKLHALVEYET EASEKAVAT
Sbjct: 181 EENIKRIFGVAGRIRSITICDPHVVDKLGKSNKSDVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNS 300
           LNDE+DWRNGMRVKPLKH+                      SKHGQRKQH RG +P+KNS
Sbjct: 241 LNDEQDWRNGMRVKPLKHM----------------------SKHGQRKQHWRGPEPDKNS 300

Query: 301 TGRI--------------TEQNGDEEIQNIV-DHHDDVPDEEVNVALLHEGDHQTKDKHG 360
           +GRI              T+QNGDEEI N+V +HHD VPDEE       EGDHQ KDKHG
Sbjct: 301 SGRIADQNGPNKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEE-------EGDHQHKDKHG 360

Query: 361 HRGRNQNQGRTRRQKYKGVNGMGHGTTTSSAHPVELSKPPPGPKMPDGTRGFTMGRGRPP 411
           HRG  QNQGRTRRQKYKGVNGMGHGTTTS+ H +ELSKPPPGPKMPDGTRGFTMGRGRPP
Sbjct: 361 HRG--QNQGRTRRQKYKGVNGMGHGTTTST-HHIELSKPPPGPKMPDGTRGFTMGRGRPP 393

[Close]

BLAST of MS011008 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 335.9 bits (860), Expect = 4.6e-92
Identity = 212/439 (48.29%), Postives = 274/439 (62.41%), Query Frame = 0


Query: 5   ERPTPSSAAVVSCPVAESIPSPPPQD--------PVGSPSRD----MPEIQSLT-SEDDH 64
           E P+ S A  +  P   +     PQ         PV   S D    + EI +L+ S+DD 
Sbjct: 13  ESPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDF 72

Query: 65  DHGNRENHDHAHEHAVR------AAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKK 124
           DH      D   +H           V +++L  +II+QVEYYFSDENLPTDK L+  +K+
Sbjct: 73  DHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKR 132

Query: 125 NKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDS 184
           NK+GFVPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS + KKVKRL   PLPE RD 
Sbjct: 133 NKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLS--PLPEIRDP 192

Query: 185 KLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHAL 244
           K+FT+LVENLPEDHS ENI+ IFG AG ++S++ICDP+A ++S K GK +  I  +LHA 
Sbjct: 193 KIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 252

Query: 245 VEYETFEASEKAVATLNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHG 304
           VEYET EA+EKA ATLN+E+DWRNG+RVK L+                     Q   K  
Sbjct: 253 VEYETVEAAEKAAATLNNEQDWRNGLRVKLLE---------------------QAAGKFA 312

Query: 305 QRKQHRRGSDPEKNSTGRITEQNGDE------EIQNIVDHHDDVPDEEVNVALLHEGDHQ 364
           QR+  RR  D EK++TGR+ +Q G E      E QN   HH D P ++       +G + 
Sbjct: 313 QRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADD-------DGGNH 372

Query: 365 TKDKHGHRGRNQNQGRTRRQKYKGVNGMGHGTTTSSA----HPVELSKPPPGPKMPDGTR 412
            KDK+G++GR   QG  RRQ ++G NG+GHGT +SS+    HPVE+SK PPGP+MPDGTR
Sbjct: 373 QKDKNGNKGRVVGQG--RRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTR 419

[Close]

BLAST of MS011008 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 261.9 bits (668), Expect = 8.5e-70
Identity = 163/349 (46.70%), Postives = 211/349 (60.46%), Query Frame = 0


Query: 5   ERPTPSSAAVVSCPVAESIPSPPPQD--------PVGSPSRD----MPEIQSLT-SEDDH 64
           E P+ S A  +  P   +     PQ         PV   S D    + EI +L+ S+DD 
Sbjct: 13  ESPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDF 72

Query: 65  DHGNRENHDHAHEHAVR------AAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKK 124
           DH      D   +H           V +++L  +II+QVEYYFSDENLPTDK L+  +K+
Sbjct: 73  DHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKR 132

Query: 125 NKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDS 184
           NK+GFVPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS + KKVKRL   PLPE RD 
Sbjct: 133 NKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLS--PLPEIRDP 192

Query: 185 KLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHAL 244
           K+FT+LVENLPEDHS ENI+ IFG AG ++S++ICDP+A ++S K GK +  I  +LHA 
Sbjct: 193 KIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 252

Query: 245 VEYETFEASEKAVATLNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHG 304
           VEYET EA+EKA ATLN+E+DWRNG+RVK L+                     Q   K  
Sbjct: 253 VEYETVEAAEKAAATLNNEQDWRNGLRVKLLE---------------------QAAGKFA 312

Query: 305 QRKQHRRGSDPEKNSTGRITEQNGDE------EIQNIVDHHDDVPDEEV 329
           QR+  RR  D EK++TGR+ +Q G E      E QN   HH D P ++V
Sbjct: 313 QRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADDV 338

[Close]

BLAST of MS011008 vs. TAIR 10
Match: AT5G46250.3 (RNA-binding protein )

HSP 1 Score: 261.9 bits (668), Expect = 8.5e-70
Identity = 163/349 (46.70%), Postives = 211/349 (60.46%), Query Frame = 0


Query: 5   ERPTPSSAAVVSCPVAESIPSPPPQD--------PVGSPSRD----MPEIQSLT-SEDDH 64
           E P+ S A  +  P   +     PQ         PV   S D    + EI +L+ S+DD 
Sbjct: 13  ESPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDF 72

Query: 65  DHGNRENHDHAHEHAVR------AAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKK 124
           DH      D   +H           V +++L  +II+QVEYYFSDENLPTDK L+  +K+
Sbjct: 73  DHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKR 132

Query: 125 NKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDS 184
           NK+GFVPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS + KKVKRL   PLPE RD 
Sbjct: 133 NKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLS--PLPEIRDP 192

Query: 185 KLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHAL 244
           K+FT+LVENLPEDHS ENI+ IFG AG ++S++ICDP+A ++S K GK +  I  +LHA 
Sbjct: 193 KIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 252

Query: 245 VEYETFEASEKAVATLNDERDWRNGMRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHG 304
           VEYET EA+EKAV TLN+E+DWRNG+RVK L+                     Q   K  
Sbjct: 253 VEYETVEAAEKAVTTLNNEQDWRNGLRVKLLE---------------------QAAGKFA 312

Query: 305 QRKQHRRGSDPEKNSTGRITEQNGDE------EIQNIVDHHDDVPDEEV 329
           QR+  RR  D EK++TGR+ +Q G E      E QN   HH D P ++V
Sbjct: 313 QRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPADDV 338

[Close]

BLAST of MS011008 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-45
Identity = 127/346 (36.71%), Postives = 187/346 (54.05%), Query Frame = 0


Query: 71  VLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFRRMKKLTQDHS 130
           +L +DL+ +I+KQVEY F+D +L  ++ +   I K+ EG+VP++ IA+ +++K LT +H 
Sbjct: 139 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 198

Query: 131 FIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHSEENIQRIFGA 190
            ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IFG 
Sbjct: 199 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 258

Query: 191 AGRVRSITICDPHAADKSGKSGKGDVLISNKLHALVEYETFEASEKAVATLNDERDWRNG 250
            G V++I IC  H  + +    KGD L+SNK+HAL+EY+    ++KAV  LNDER+WR G
Sbjct: 259 VGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKG 318

Query: 251 MRVKPLKHLVLSFTLLICLVEGYLQYSSQLQSKHGQRKQHRRGSDPEKNSTGRITEQNGD 310
           +RV+          LL C  +  L              ++RR  D      G +     D
Sbjct: 319 LRVR---------LLLRCSPKSVL--------------KNRRNFD------GILI----D 378

Query: 311 EEIQNIVDHHDDVPDEEVNVALLHEGDHQTKDKHGHRGRNQNQGRTRRQKYKGVNG--MG 370
           +E+ +     D          L ++GD         +GR + +GR+ R    G  G   G
Sbjct: 379 DELPSYESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFG 438

Query: 371 HGTTTSSAHPV----ELSKP---PPGPKMPDGTRGFTMGRGRPPTS 408
            G   S   P     E S P     GP+MPDGTRGFTMGRG+P  S
Sbjct: 439 IGLGVSLGIPSLGSHESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of MS011008 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-42
Identity = 132/397 (33.25%), Postives = 200/397 (50.38%), Query Frame = 0


Query: 49  DDHDHGNREN-HDHAHEHAVRAAV-----LLEDLKHRIIKQVEYYFSDENLPTDKHLMGI 108
           D  DH  RE+ +D   E     ++     L ED   +I+ QVEYYFSD NL T  HLM  
Sbjct: 160 DRRDHSKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRF 219

Query: 109 IKKNKEGFVPIALIAAFRRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPET 168
           I K+ EG+VPI ++A+F+++K +  ++S +AA L+ S+ L VS +GKKV+R+ PI     
Sbjct: 220 ICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAI 279

Query: 169 RDSKLFTILVENLPEDHSEENIQRIFGAAGRVRSITICDPH-----AADKSGKSGKGD-V 228
            + +   I+ ENLPEDH  +N+ +IF   G V++I  C P      A   +  + K D  
Sbjct: 280 EELQSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGT 339

Query: 229 LISNKLHALVEYETFEASEKAVATLNDERDWRNGMRVK-PLKHLVLSFTLLICLVEGYLQ 288
           L SNK+HA VEYE  E +E+AV  L++  +WR+G++V+  LKH                Q
Sbjct: 340 LFSNKVHAFVEYEIVELAERAVTELSEAGNWRSGLKVRLMLKH----------------Q 399

Query: 289 YSSQLQSKHGQRKQHRRGSDPEKNSTGRITEQNGDEEIQNIVDHHDDVPDEE-------- 348
                Q +   RK H    + E++      +Q  +++  +     D    E+        
Sbjct: 400 TKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGN 459

Query: 349 VNVALLHEGDHQTKDK-----HGHRGRNQNQGRTRRQKYKGVNGMGH---------GTTT 405
              A   +G ++ + K       H+ +NQN   +  Q +   NG G+         GT  
Sbjct: 460 EKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNH-NGRGNHHHHHHHQVGTQP 519

The following BLAST results are available for this feature:

BLAST of MS011008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146647.1	2.4e-207	92.46	la-related protein 6A [Momordica charantia]	[more]
XP_038882123.1	1.0e-170	77.18	la-related protein 6A [Benincasa hispida]	[more]
KAA0052548.1	1.4e-167	76.81	la-related protein 6A [Cucumis melo var. makuwa]	[more]
XP_023002906.1	1.2e-166	76.24	la-related protein 6A isoform X1 [Cucurbita maxima]	[more]
XP_022926362.1	2.3e-165	75.76	la-related protein 6A isoform X1 [Cucurbita moschata]	[more]

BLAST of MS011008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94A38	6.5e-91	48.29	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q9LHL3	2.7e-44	36.71	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	6.2e-41	33.25	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q05CL8	3.5e-20	39.02	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q7ZWE3	7.8e-20	35.11	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1	[more]

BLAST of MS011008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D058	1.2e-207	92.46	la-related protein 6A OS=Momordica charantia OX=3673 GN=LOC111015798 PE=4 SV=1	[more]
A0A5A7UBI5	6.8e-168	76.81	La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A6J1KMM2	5.8e-167	76.24	la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=...	[more]
A0A6J1EEB2	1.1e-165	75.76	la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 P...	[more]
A0A1S3AYU2	1.4e-165	75.53	la-related protein 6A OS=Cucumis melo OX=3656 GN=LOC103484374 PE=4 SV=1	[more]

BLAST of MS011008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46250.1	4.6e-92	48.29	RNA-binding protein	[more]
AT5G46250.2	8.5e-70	46.70	RNA-binding protein	[more]
AT5G46250.3	8.5e-70	46.70	RNA-binding protein	[more]
AT3G19090.1	1.9e-45	36.71	RNA-binding protein	[more]
AT2G43970.1	4.4e-42	33.25	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 109..124 score: 39.2 coord: 140..153 score: 27.92 coord: 83..100 score: 65.15
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 74..154 e-value: 2.3E-40 score: 150.1
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 80..138 e-value: 7.6E-25 score: 86.7
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 70..161 score: 27.841869
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 69..158 e-value: 2.8E-31 score: 109.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 170..243 e-value: 2.3E-6 score: 27.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..254 score: 9.899693
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 160..258 e-value: 3.7E-10 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 336..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..63
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 19..406
None	No IPR available	PANTHER	PTHR22792:SF102	LA-RELATED PROTEIN 6A	coord: 19..406
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 5.0
None	No IPR available	CDD	cd08033	LARP_6	coord: 77..153 e-value: 1.25978E-36 score: 126.629
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 168..256 e-value: 6.82541E-40 score: 135.723
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 70..163
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 164..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS011008.1	MS011008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding