MS010991 (gene) Bitter gourd (TR) v1

Overview
NameMS010991
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionStarch synthase, chloroplastic/amyloplastic
Locationscaffold35: 3471022 .. 3471207 (-)
RNA-Seq ExpressionMS010991
SyntenyMS010991
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAGTTGCTGCCCAAGAGAACGTACACGTGGAACAGCTGGAAGACAAATTGGAAAGGTTCCAGAAGCAGCTAAATTTCAGTGTAGCTACTGAACAGAGTGACTTTGGTATGCATGAAAATCAGAACATCGTTTCCGTTGATTCTCTTACCAAGGAGCTTCATTTATTGAGTTCAGAAAATGTT

mRNA sequence

ATTAAAGTTGCTGCCCAAGAGAACGTACACGTGGAACAGCTGGAAGACAAATTGGAAAGGTTCCAGAAGCAGCTAAATTTCAGTGTAGCTACTGAACAGAGTGACTTTGGTATGCATGAAAATCAGAACATCGTTTCCGTTGATTCTCTTACCAAGGAGCTTCATTTATTGAGTTCAGAAAATGTT

Coding sequence (CDS)

ATTAAAGTTGCTGCCCAAGAGAACGTACACGTGGAACAGCTGGAAGACAAATTGGAAAGGTTCCAGAAGCAGCTAAATTTCAGTGTAGCTACTGAACAGAGTGACTTTGGTATGCATGAAAATCAGAACATCGTTTCCGTTGATTCTCTTACCAAGGAGCTTCATTTATTGAGTTCAGAAAATGTT

Protein sequence

IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSENV
Homology
BLAST of MS010991 vs. NCBI nr
Match: XP_022142173.1 (probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IKVAAQE VHVE LED+LE+ QKQLNFS  TEQSD GMH NQN V +DSLT+ELHLL SE
Sbjct: 198 IKVAAQEKVHVELLEDQLEKLQKQLNFSGGTEQSDLGMHRNQNSVPIDSLTEELHLLRSE 257

Query: 61  NV 63
           N+
Sbjct: 258 NI 259

BLAST of MS010991 vs. NCBI nr
Match: XP_022142174.1 (probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IKVAAQE VHVE LED+LE+ QKQLNFS  TEQSD GMH NQN V +DSLT+ELHLL SE
Sbjct: 51  IKVAAQEKVHVELLEDQLEKLQKQLNFSGGTEQSDLGMHRNQNSVPIDSLTEELHLLRSE 110

Query: 61  NV 63
           N+
Sbjct: 111 NI 112

BLAST of MS010991 vs. NCBI nr
Match: XP_022926339.1 (probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Cucurbita moschata] >XP_022926340.1 probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE+SD G+H NQN V  DSLTKELHLL SE
Sbjct: 196 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTERSDLGLHGNQNNVLTDSLTKELHLLRSE 255

Query: 61  NV 63
           NV
Sbjct: 256 NV 257

BLAST of MS010991 vs. NCBI nr
Match: XP_022926341.1 (probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE+SD G+H NQN V  DSLTKELHLL SE
Sbjct: 196 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTERSDLGLHGNQNNVLTDSLTKELHLLRSE 255

Query: 61  NV 63
           NV
Sbjct: 256 NV 257

BLAST of MS010991 vs. NCBI nr
Match: XP_023518946.1 (probable starch synthase 4, chloroplastic/amyloplastic [Cucurbita pepo subsp. pepo] >XP_023518947.1 probable starch synthase 4, chloroplastic/amyloplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE SD G+H NQN V  DSLTKELHLL SE
Sbjct: 196 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTEHSDLGLHGNQNNVLTDSLTKELHLLRSE 255

Query: 61  NV 63
           NV
Sbjct: 256 NV 257

BLAST of MS010991 vs. ExPASy TrEMBL
Match: A0A6J1CML4 (probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012356 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IKVAAQE VHVE LED+LE+ QKQLNFS  TEQSD GMH NQN V +DSLT+ELHLL SE
Sbjct: 198 IKVAAQEKVHVELLEDQLEKLQKQLNFSGGTEQSDLGMHRNQNSVPIDSLTEELHLLRSE 257

Query: 61  NV 63
           N+
Sbjct: 258 NI 259

BLAST of MS010991 vs. ExPASy TrEMBL
Match: A0A6J1CKU0 (Starch synthase, chloroplastic/amyloplastic OS=Momordica charantia OX=3673 GN=LOC111012356 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IKVAAQE VHVE LED+LE+ QKQLNFS  TEQSD GMH NQN V +DSLT+ELHLL SE
Sbjct: 51  IKVAAQEKVHVELLEDQLEKLQKQLNFSGGTEQSDLGMHRNQNSVPIDSLTEELHLLRSE 110

Query: 61  NV 63
           N+
Sbjct: 111 NI 112

BLAST of MS010991 vs. ExPASy TrEMBL
Match: A0A6J1EEU0 (probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433519 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE+SD G+H NQN V  DSLTKELHLL SE
Sbjct: 196 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTERSDLGLHGNQNNVLTDSLTKELHLLRSE 255

Query: 61  NV 63
           NV
Sbjct: 256 NV 257

BLAST of MS010991 vs. ExPASy TrEMBL
Match: A0A6J1EEL2 (probable starch synthase 4, chloroplastic/amyloplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433519 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE+SD G+H NQN V  DSLTKELHLL SE
Sbjct: 196 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTERSDLGLHGNQNNVLTDSLTKELHLLRSE 255

Query: 61  NV 63
           NV
Sbjct: 256 NV 257

BLAST of MS010991 vs. ExPASy TrEMBL
Match: A0A6J1KRB6 (probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496933 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1   IKVAAQENVHVEQLEDKLERFQKQLNFSVATEQSDFGMHENQNIVSVDSLTKELHLLSSE 60
           IK   QE VHVE LED+ E+ QKQLNFS  TE SD G+H NQN V  DSLTKELHLL SE
Sbjct: 197 IKADDQEKVHVELLEDQFEKLQKQLNFSGGTELSDLGLHGNQNNVLTDSLTKELHLLRSE 256

Query: 61  NV 63
           NV
Sbjct: 257 NV 258

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142173.14.2e-1575.81probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Momordica cha... [more]
XP_022142174.14.2e-1575.81probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Momordica cha... [more]
XP_022926339.19.7e-1269.35probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Cucurbita mos... [more]
XP_022926341.19.7e-1269.35probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Cucurbita mos... [more]
XP_023518946.11.3e-1169.35probable starch synthase 4, chloroplastic/amyloplastic [Cucurbita pepo subsp. pe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CML42.0e-1575.81probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Momordica c... [more]
A0A6J1CKU02.0e-1575.81Starch synthase, chloroplastic/amyloplastic OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1EEU04.7e-1269.35probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Cucurbita m... [more]
A0A6J1EEL24.7e-1269.35probable starch synthase 4, chloroplastic/amyloplastic isoform X2 OS=Cucurbita m... [more]
A0A6J1KRB61.0e-1169.35probable starch synthase 4, chloroplastic/amyloplastic isoform X1 OS=Cucurbita m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010991.1MS010991.1mRNA