Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCCAAACTGGAAAGGCAAAAAAGAAAAGAGAAGCAATCACCTGAATCAGAGGAGGGAAAAAGCAGTATCCAATCTC CCGCTTCGAGTATTAAAGGCCAGATCCCTCGCCAAGTTTCCCATGAACTTCACGAGCTTCCGTTTCACAGGAAAGTGAAAACTCCGATTCATAGACACACTGCAGAGAAGCGAGCAATGGGAGAGATCTGCTGCAGCCAGATTCACAGACACCCCCTTGCAGCGGAGGACACGTCAGCAAGAAATCGGTGTGTCCGTTTCCCGACACCAAATACAAACAGCCCTTTTTTCTTT mRNA sequence
GAGCCAAACTGGAAAGGCAAAAAAGAAAAGAGAAGCAATCACCTGAATCAGAGGAGGGAAAAAGCAGTATCCAATCTCGCTTCGAGTATTAAAGGCCAGATCCCTCGCCAAGTTTCCCATGAACTTCACGAGCTTCCGTTTCACAGGAAAGTGAAAACTCCGATTCATAGACACACTGCAGAGAAGCGAGCAATGGGAGAGATCTGCTGCAGCCAGATTCACAGACACCCCCTTGCAGCGGAGGACACGTCAGCAAGAAATCGGTGTGTCCGTTTCCCGACACCAAATACAAACAGCCCTTTTTTCTTT Coding sequence (CDS)
GAGCCAAACTGGAAAGGCAAAAAAGAAAAGAGAAGCAATCACCTGAATCAGAGGAGGGAAAAAGCAGTATCCAATCTCGCTTCGAGTATTAAAGGCCAGATCCCTCGCCAAGTTTCCCATGAACTTCACGAGCTTCCGTTTCACAGGAAAGTGAAAACTCCGATTCATAGACACACTGCAGAGAAGCGAGCAATGGGAGAGATCTGCTGCAGCCAGATTCACAGACACCCCCTTGCAGCGGAGGACACGTCAGCAAGAAATCGGTGTGTCCGTTTCCCGACACCAAATACAAACAGCCCTTTTTTCTTT Protein sequence
EPNWKGKKEKRSNHLNQRREKAVSNLASSIKGQIPRQVSHELHELPFHRKVKTPIHRHTAEKRAMGEICCSQIHRHPLAAEDTSARNRCVRFPTPNTNSPFFF
Homology
BLAST of MS010954 vs. NCBI nr
Match:
KGN49329.1 (hypothetical protein Csa_003685 [Cucumis sativus])
HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 0
Query: 1 EPNWKGKKEKRSNHLNQRREKAVSNLAS-SIKGQIPRQVSHELHELPFHRKV-------K 60 E + K +KEK+ NHLNQ+R KAVSN+ IK QI Q SHE HE+ RKV + Sbjct: 98 EEDGKKQKEKKKNHLNQKRGKAVSNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQE 157 Query: 61 TPIHRHTAEKRAMGEICCSQIHRHPLAAEDTSARNRCVRFPTPNTNSPFFF 104 TP+ R+ P E TSA NRCVRF T NT P F Sbjct: 158 TPLQRNGGAD-----------SETPPPPEGTSAVNRCVRFSTQNTPFPSKF 197
BLAST of MS010954 vs. ExPASy TrEMBL
Match:
A0A0A0KKF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520270 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 8.9e-08
Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 0
Query: 1 EPNWKGKKEKRSNHLNQRREKAVSNLAS-SIKGQIPRQVSHELHELPFHRKV-------K 60 E + K +KEK+ NHLNQ+R KAVSN+ IK QI Q SHE HE+ RKV + Sbjct: 98 EEDGKKQKEKKKNHLNQKRGKAVSNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQE 157 Query: 61 TPIHRHTAEKRAMGEICCSQIHRHPLAAEDTSARNRCVRFPTPNTNSPFFF 104 TP+ R+ P E TSA NRCVRF T NT P F Sbjct: 158 TPLQRNGGAD-----------SETPPPPEGTSAVNRCVRFSTQNTPFPSKF 197
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KGN49329.1 1.8e-07 43.24 hypothetical protein Csa_003685 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KKF9 8.9e-08 43.24 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520270 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
G A G C C A A A C T G G A A A G G C A A A A A A G A A A A G A G A A G C A A T C A C C T G A A T C A G A G G A G G G A A A A A G C A G T A T C C A A T C T C G C T T C G A G T A T T A A A G G C C A G A T C C C T C G C C A A G T T T C C C A T G A A C T T C A C G A G C T T C C G T T T C A C A G G A A A G T G A A A A C T C C G A T T C A T A G A C A C A C T G C A G A G A A G C G A G C A A T G G G A G A G A T C T G C T G C A G C C A G A T T C A C A G A C A C C C C C T T G C A G C G G A G G A C A C G T C A G C A A G A A A T C G G T G T G T C C G T T T C C C G A C A C C A A A T A C A A A C A G C C C T T T T T T C T T T 50 100 150 200 250 300 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..18
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..21
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS010954.1 MS010954.1 mRNA