MS010940 (gene) Bitter gourd (TR) v1

Overview


Name	MS010940
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L34, chloroplastic
Location	scaffold35: 3097665 .. 3098579 (-)
RNA-Seq Expression	MS010940
Synteny	MS010940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGATATCAGTGTTATCGACCCCATGGGTTTCAAACGGAGCTGTGGCTGTCCGCGTTCCCTCAGCTTCTCTTGTAATCTCCACTGGCTCTAGAAGTTGCTGCTCCGTATCTCTCAACACTGCAAACAACACTTCCGCTCGTTCTGGATTGCTCCGTTGTTCGTTTCTTCCTTCTTCCTCCCTTTCATGCTCTTCATCTTTTTCAGGTGAGGAACTTTTCTGTATTGATTCATGTAGTTTAGAGATTTTGCATTATTACGTGCTCATTTGCCTATGTACTGGAGTTTGTATTAGTTCACTGATGTATTTATTTGCGCTCATGTGCGTTTGTCATTTTCTAGGTCCTTACATTTCAAATTGTATGCATTCAAGGTCGTTTGATTTAGTAATTTCACTGTTGTTCGATGGCGTGATTTTCGGATGGTTGATTCTTGCTTGCATTGCATTCGATTATTTTCCTTTTTGTGCTTTCCAGTAGTCGAATTGTAAGTGAATGACGAGGCAGGTGGCTGCATATCTCCATTTTTTTTTTAATCTGATAATCAATCCATTGTGTTTTACACTTTGATGGGAAAATTAGGAAGTAATGCACCACCTCCATTCTGTTGATCAAGATTTTATCATAAAATTTATGGGAAAGAAGTACTCATTTGCAGGTTTTTCTTTGGGTTTGGACTGGAACTCCAGAATTGGGGTTGGACAAGGAAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTTAAGCGCAGGCGTGCCAAGGGGAGGAAGGTCCTCTGCACGAAGTCTTACCCTAGTAGCGGAAAGGGTGCT

mRNA sequence

ATGGCAGCGATATCAGTGTTATCGACCCCATGGGTTTCAAACGGAGCTGTGGCTGTCCGCGTTCCCTCAGCTTCTCTTGTAATCTCCACTGGCTCTAGAAGTTGCTGCTCCGTATCTCTCAACACTGCAAACAACACTTCCGCTCGTTCTGGATTGCTCCGTTGTTCGTTTCTTCCTTCTTCCTCCCTTTCATGCTCTTCATCTTTTTCAGGTTTTTCTTTGGGTTTGGACTGGAACTCCAGAATTGGGGTTGGACAAGGAAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTTAAGCGCAGGCGTGCCAAGGGGAGGAAGGTCCTCTGCACGAAGTCTTACCCTAGTAGCGGAAAGGGTGCT

Coding sequence (CDS)

ATGGCAGCGATATCAGTGTTATCGACCCCATGGGTTTCAAACGGAGCTGTGGCTGTCCGCGTTCCCTCAGCTTCTCTTGTAATCTCCACTGGCTCTAGAAGTTGCTGCTCCGTATCTCTCAACACTGCAAACAACACTTCCGCTCGTTCTGGATTGCTCCGTTGTTCGTTTCTTCCTTCTTCCTCCCTTTCATGCTCTTCATCTTTTTCAGGTTTTTCTTTGGGTTTGGACTGGAACTCCAGAATTGGGGTTGGACAAGGAAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGTTTTCGCCGACGAATGCGGACCACCAGTGGTAGAGCTGTTCTTAAGCGCAGGCGTGCCAAGGGGAGGAAGGTCCTCTGCACGAAGTCTTACCCTAGTAGCGGAAAGGGTGCT

Protein sequence

MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA

Homology

[Close]

BLAST of MS010940 vs. NCBI nr
Match: XP_022142342.1 (50S ribosomal protein L34, chloroplastic [Momordica charantia])

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLSTPWV +GAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGFSLGLDWNSRI VGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of MS010940 vs. NCBI nr
Match: XP_008439748.1 (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. NCBI nr
Match: XP_038883793.1 (50S ribosomal protein L34, chloroplastic [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.5e-64
Identity = 142/155 (91.61%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVS GA AVRVPSASLVISTG R CCSVSLNTANNTSARSGLL CSFL S
Sbjct: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGFRGCCSVSLNTANNTSARSGLLHCSFLSS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S+IGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. NCBI nr
Match: XP_004134668.1 (50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypothetical protein Csa_003653 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 139/155 (89.68%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLSTPWVS GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++GVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. NCBI nr
Match: KAA0052628.1 (50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 127/155 (81.94%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL C     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                       SLGLDW+S++GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of MS010940 vs. ExPASy Swiss-Prot
Match: P82244 (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-34
Identity = 101/156 (64.74%), Postives = 113/156 (72.44%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFL-P 60
           MA +S+LST      A+  R PSASL   TGSR+  +    + N  SARSG L CSFL P
Sbjct: 1   MATLSLLSTG--VGAAITNRTPSASLTFITGSRT--TNKRVSFNGGSARSGSLHCSFLAP 60

Query: 61  SSSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL  SS+FSG SLGLD  S  GV   + R  VVRAGKAALC TKR+RSRKSLARTHGF
Sbjct: 61  SSSL--SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGF 120

Query: 121 RRRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           R RM TTSGRA+LKRRRAKGRK+LCTK+ PSSGK A
Sbjct: 121 RLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]

BLAST of MS010940 vs. ExPASy Swiss-Prot
Match: Q9LP37 (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29
Identity = 94/155 (60.65%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 2   AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSS 61
           +A S L  P  SNG +   VPSASL + TG R   S     +  +SA S LL CSFL SS
Sbjct: 11  SASSRLWNPAASNGKIC--VPSASLSLRTGCRRSSS-----SLTSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSG S+  D +S+  G+   + R LVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTTSGRA +KRRRAKGR  LC KS PSSGK A
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

[Close]

BLAST of MS010940 vs. ExPASy Swiss-Prot
Match: B7J3D6 (50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP 104768 / NCIMB 8455) OX=243159 GN=rpmH PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 115 RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC 145
           RTHGFR RM T SGR VLKRRRAKGR+ LC
Sbjct: 14  RTHGFRARMATKSGRLVLKRRRAKGRQRLC 43

[Close]

BLAST of MS010940 vs. ExPASy Swiss-Prot
Match: B5EJJ2 (50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) OX=380394 GN=rpmH PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 115 RTHGFRRRMRTTSGRAVLKRRRAKGRKVLC 145
           RTHGFR RM T SGR VLKRRRAKGR+ LC
Sbjct: 14  RTHGFRARMATKSGRLVLKRRRAKGRQRLC 43

[Close]

BLAST of MS010940 vs. ExPASy TrEMBL
Match: A0A6J1CMH5 (50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012484 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLSTPWV +GAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS
Sbjct: 1   MAAISVLSTPWVLSGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSGFSLGLDWNSRI VGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGFSLGLDWNSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA
Sbjct: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 155

[Close]

BLAST of MS010940 vs. ExPASy TrEMBL
Match: A0A5D3CSJ7 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008120 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. ExPASy TrEMBL
Match: A0A1S3AZG6 (50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. ExPASy TrEMBL
Match: A0A0A0KI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 139/155 (89.68%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLSTPWVS GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSCSSSFSG SLGLDW+S++GVGQGKGR LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of MS010940 vs. ExPASy TrEMBL
Match: A0A5A7UBQ8 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002370 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 127/155 (81.94%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPS 60
           MAAISVLS+PWVSNGA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL C     
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC----- 60

Query: 61  SSLSCSSSFSGFSLGLDWNSRIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
                       SLGLDW+S++GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  -----------LSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 139

[Close]

BLAST of MS010940 vs. TAIR 10
Match: AT1G29070.1 (Ribosomal protein L34 )

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-30
Identity = 94/155 (60.65%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 2   AAISVLSTPWVSNGAVAVRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSS 61
           +A S L  P  SNG +   VPSASL + TG R   S     +  +SA S LL CSFL SS
Sbjct: 11  SASSRLWNPAASNGKIC--VPSASLSLRTGCRRSSS-----SLTSSASSQLLHCSFL-SS 70

Query: 62  SLSCSSSFSGFSLGLDWNSRI-GVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 121
            +S +S FSG S+  D +S+  G+   + R LVVRAGKAALCQTKR+RSRKSLARTHGFR
Sbjct: 71  PVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFR 130

Query: 122 RRMRTTSGRAVLKRRRAKGRKVLCTKSYPSSGKGA 156
           RRMRTTSGRA +KRRRAKGR  LC KS PSSGK A
Sbjct: 131 RRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157

The following BLAST results are available for this feature:

BLAST of MS010940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142342.1	5.1e-70	98.06	50S ribosomal protein L34, chloroplastic [Momordica charantia]	[more]
XP_008439748.1	2.2e-65	92.26	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 5...	[more]
XP_038883793.1	5.5e-64	91.61	50S ribosomal protein L34, chloroplastic [Benincasa hispida]	[more]
XP_004134668.1	4.6e-63	89.68	50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypotheti...	[more]
KAA0052628.1	3.0e-54	81.94	50S ribosomal protein L34 [Cucumis melo var. makuwa]	[more]

BLAST of MS010940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82244	2.8e-34	64.74	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 P...	[more]
Q9LP37	2.7e-29	60.65	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
B7J3D6	8.6e-04	80.00	50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 /...	[more]
B5EJJ2	8.6e-04	80.00	50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) ...	[more]

BLAST of MS010940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMH5	2.5e-70	98.06	50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3CSJ7	1.1e-65	92.26	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZG6	1.1e-65	92.26	50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452...	[more]
A0A0A0KI92	2.2e-63	89.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1	[more]
A0A5A7UBQ8	1.5e-54	81.94	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of MS010940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29070.1	1.9e-30	60.65	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.3980		coord: 97..155 e-value: 4.2E-25 score: 89.1
None	No IPR available	PANTHER	PTHR14503:SF9	BNAC06G17900D PROTEIN	coord: 13..154
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 109..144 e-value: 4.6E-12 score: 45.7
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 110..143 e-value: 1.8E-10 score: 38.8
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 13..154
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 97..145 score: 12.648815

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010940.1	MS010940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome