MS010939 (gene) Bitter gourd (TR) v1

Overview
NameMS010939
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold35: 3096712 .. 3096855 (+)
RNA-Seq ExpressionMS010939
SyntenyMS010939
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATTGAAAAAATGAATGCTAAAGCAAATATACCGAGTTCATCAAGGAAGCAGAGCCAAAAAGCAAATGCACTTACCAACGAAATAGTAAAGTTTTCTCCATCCACCACACAAAATGATGAATTCCCTGACTGGGACGTTATT

mRNA sequence

CAGATTGAAAAAATGAATGCTAAAGCAAATATACCGAGTTCATCAAGGAAGCAGAGCCAAAAAGCAAATGCACTTACCAACGAAATAGTAAAGTTTTCTCCATCCACCACACAAAATGATGAATTCCCTGACTGGGACGTTATT

Coding sequence (CDS)

CAGATTGAAAAAATGAATGCTAAAGCAAATATACCGAGTTCATCAAGGAAGCAGAGCCAAAAAGCAAATGCACTTACCAACGAAATAGTAAAGTTTTCTCCATCCACCACACAAAATGATGAATTCCCTGACTGGGACGTTATT

Protein sequence

QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI
Homology
BLAST of MS010939 vs. NCBI nr
Match: XP_022925761.1 (uncharacterized protein LOC111433073 isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 161 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 208

BLAST of MS010939 vs. NCBI nr
Match: XP_022925763.1 (uncharacterized protein LOC111433073 isoform X3 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 138 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 185

BLAST of MS010939 vs. NCBI nr
Match: KAG6581355.1 (hypothetical protein SDJN03_21357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 113 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 160

BLAST of MS010939 vs. NCBI nr
Match: KAG7034640.1 (hypothetical protein SDJN02_04370 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 125 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 172

BLAST of MS010939 vs. NCBI nr
Match: XP_023544559.1 (uncharacterized protein LOC111804099 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 182 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTIQNDEFPDWEIV 229

BLAST of MS010939 vs. ExPASy TrEMBL
Match: A0A6J1EG60 (uncharacterized protein LOC111433073 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111433073 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 138 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 185

BLAST of MS010939 vs. ExPASy TrEMBL
Match: A0A6J1ED31 (uncharacterized protein LOC111433073 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433073 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 161 EIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 208

BLAST of MS010939 vs. ExPASy TrEMBL
Match: A0A6J1ECJ4 (uncharacterized protein LOC111433073 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433073 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  NAKANI   SRKQSQK NA+T+EI+K SPST QNDEFPDW+++
Sbjct: 155 KIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 202

BLAST of MS010939 vs. ExPASy TrEMBL
Match: A0A0A0KKC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519520 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   QIEKMNAKANIPSSSRKQSQKANALTNEIVKFSPSTTQNDEFPDWDVI 49
           +IE  N KANI   SRKQSQKA     EIVKFSPST QNDEF DW++I
Sbjct: 120 KIENKNVKANISRPSRKQSQKA----KEIVKFSPSTIQNDEFSDWEII 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022925761.12.3e-0868.75uncharacterized protein LOC111433073 isoform X1 [Cucurbita moschata][more]
XP_022925763.12.3e-0868.75uncharacterized protein LOC111433073 isoform X3 [Cucurbita moschata][more]
KAG6581355.12.3e-0868.75hypothetical protein SDJN03_21357, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034640.12.3e-0868.75hypothetical protein SDJN02_04370 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023544559.12.3e-0868.75uncharacterized protein LOC111804099 isoform X3 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EG601.1e-0868.75uncharacterized protein LOC111433073 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1ED311.1e-0868.75uncharacterized protein LOC111433073 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1ECJ41.4e-0868.75uncharacterized protein LOC111433073 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0KKC61.5e-0566.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010939.1MS010939.1mRNA