MS010933 (gene) Bitter gourd (TR) v1

Overview


Name	MS010933
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	scaffold35: 3067501 .. 3068049 (-)
RNA-Seq Expression	MS010933
Synteny	MS010933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGCCAGGGCAACGCGTCGGCGTCGGCGTCGTCGTCGTCGTCTGATCCACAATCACAAGCACAAGCAGCGGTTCCGCTGAGCCGTTACGAGTCGCAGAAGCGGCGAGATTGGAACACGTTCGGGCAGTATCTGAAGAACCAAGCGCCAGCGGTTTCGTTGTCGGAGTGCAACTGTGGGCACGTACTTGAATTTCTCAGGTACCTGGACCAGTTCGGGAAGACCAGGGTTCACTCACATGGGTGTGTCTTTTTCGGACACCCCGACCCTCCGGCCCCTTGTCCTTGCCCCCTCAAGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTACGCGCCGCCTACGAGGAGCACGGCGGCTCCTCTCACGCCAACCCTTTCGGCAACGGAGCCATCCGCACCTACCTCCGAGAGGTCAAGGAGTGTCAAGCCAAAGCCAGGGGAATCCCTTACAAGAAGAAAAAGAAGAAGAAGAAAATCATCATCACATCAAAATCAAATAATAACCCCAACGACGACCCCGCTCCTTTGACCCAGATGGCT

mRNA sequence

ATGTTAGGCCAGGGCAACGCGTCGGCGTCGGCGTCGTCGTCGTCGTCTGATCCACAATCACAAGCACAAGCAGCGGTTCCGCTGAGCCGTTACGAGTCGCAGAAGCGGCGAGATTGGAACACGTTCGGGCAGTATCTGAAGAACCAAGCGCCAGCGGTTTCGTTGTCGGAGTGCAACTGTGGGCACGTACTTGAATTTCTCAGGTACCTGGACCAGTTCGGGAAGACCAGGGTTCACTCACATGGGTGTGTCTTTTTCGGACACCCCGACCCTCCGGCCCCTTGTCCTTGCCCCCTCAAGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTACGCGCCGCCTACGAGGAGCACGGCGGCTCCTCTCACGCCAACCCTTTCGGCAACGGAGCCATCCGCACCTACCTCCGAGAGGTCAAGGAGTGTCAAGCCAAAGCCAGGGGAATCCCTTACAAGAAGAAAAAGAAGAAGAAGAAAATCATCATCACATCAAAATCAAATAATAACCCCAACGACGACCCCGCTCCTTTGACCCAGATGGCT

Coding sequence (CDS)

ATGTTAGGCCAGGGCAACGCGTCGGCGTCGGCGTCGTCGTCGTCGTCTGATCCACAATCACAAGCACAAGCAGCGGTTCCGCTGAGCCGTTACGAGTCGCAGAAGCGGCGAGATTGGAACACGTTCGGGCAGTATCTGAAGAACCAAGCGCCAGCGGTTTCGTTGTCGGAGTGCAACTGTGGGCACGTACTTGAATTTCTCAGGTACCTGGACCAGTTCGGGAAGACCAGGGTTCACTCACATGGGTGTGTCTTTTTCGGACACCCCGACCCTCCGGCCCCTTGTCCTTGCCCCCTCAAGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTACGCGCCGCCTACGAGGAGCACGGCGGCTCCTCTCACGCCAACCCTTTCGGCAACGGAGCCATCCGCACCTACCTCCGAGAGGTCAAGGAGTGTCAAGCCAAAGCCAGGGGAATCCCTTACAAGAAGAAAAAGAAGAAGAAGAAAATCATCATCACATCAAAATCAAATAATAACCCCAACGACGACCCCGCTCCTTTGACCCAGATGGCT

Protein sequence

MLGQGNASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSNNNPNDDPAPLTQMA

Homology

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BLAST of MS010933 vs. NCBI nr
Match: XP_022142146.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Momordica charantia])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MLGQGNASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC 60
           MLGQ NASASASSS    Q+QAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC
Sbjct: 1   MLGQDNASASASSSDPQAQAQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC 60

Query: 61  GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 120
           GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH
Sbjct: 61  GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 120

Query: 121 GGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSNNNPNDDPAPLT 180
           GGSSHANPFGNGAIRTYLREVKECQAKARGIPY+KKKKKKKIIITSKSNNNPNDD +PLT
Sbjct: 121 GGSSHANPFGNGAIRTYLREVKECQAKARGIPYQKKKKKKKIIITSKSNNNPNDDTSPLT 180

Query: 181 QMA 184
           QMA
Sbjct: 181 QMA 183

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BLAST of MS010933 vs. NCBI nr
Match: XP_008465528.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 5.5e-71
Identity = 137/174 (78.74%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 19  QSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRV 78
           Q+Q  A VPLSRYESQKRRDWNTFGQYLKNQ P VSLS CNC HVLEFLRYLDQFGKTRV
Sbjct: 36  QAQPGAVVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRV 95

Query: 79  HSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYL 138
           HSHGCVFFG PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGS   NPFGNGAIRTYL
Sbjct: 96  HSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYL 155

Query: 139 REVKECQAKARGIPYKKKKKKKKIIITSKSN----------NNPNDDPAPLTQM 183
           REVKE QAKARGIPYKKKKKK+       +N          NN ND  APLT +
Sbjct: 156 REVKESQAKARGIPYKKKKKKRNNQTMMMNNMNKQQLQQLPNNNNDTNAPLTHI 209

[Close]

BLAST of MS010933 vs. NCBI nr
Match: KAA0052619.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK13209.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 7.1e-71
Identity = 137/175 (78.29%), Postives = 141/175 (80.57%), Query Frame = 0


Query: 19  QSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRV 78
           Q+Q  A VPLSRYESQKRRDWNTFGQYLKNQ P VSLS CNC HVLEFLRYLDQFGKTRV
Sbjct: 31  QAQPGAVVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRV 90

Query: 79  HSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYL 138
           HSHGCVFFG PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGS   NPFGNGAIRTYL
Sbjct: 91  HSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYL 150

Query: 139 REVKECQAKARGIPYKKKKKKKKIIITSKSN-----------NNPNDDPAPLTQM 183
           REVKE QAKARGIPYKKKKKK+       +N           NN ND  APLT +
Sbjct: 151 REVKESQAKARGIPYKKKKKKRNNQTMMMNNMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of MS010933 vs. NCBI nr
Match: XP_022926651.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926652.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >KAG7026524.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.0 bits (702), Expect = 4.6e-70
Identity = 146/194 (75.26%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MLGQ---GNASASASSSSSDPQSQAQ--------AAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLG    G   +S+ S++ DPQ Q Q        +AVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  APAVSLSECNCGHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDAL 120
            P V LS CN  HVLEFLRYLDQFGKTRVHSHGCVFFG PDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEEHGGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSN 180
           IGRLRAAYEE GGS   NPFGNGAIR YLREVK+CQAKARGIPYKKKKKKK+  I  K N
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQII-KGN 180

Query: 181 NNPNDDPAPLTQMA 184
           +N ND  A LTQMA
Sbjct: 181 DN-NDTNAALTQMA 192

[Close]

BLAST of MS010933 vs. NCBI nr
Match: XP_038881253.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 7.9e-70
Identity = 139/186 (74.73%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 5   GNASASASSSSSDPQSQAQ----AAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC 64
           G A  +    ++ PQ+Q Q    A VPLSRYESQKRRDWNTFGQYLKNQ P VSLS CNC
Sbjct: 14  GLAITADQQQAAQPQTQTQTQVGAGVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSNCNC 73

Query: 65  GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 124
            HVLEFLRYLDQFGKTRVHSHGCVFFG P+PPAPCPCPLKQAWGSLDALIGRLRAAYEEH
Sbjct: 74  NHVLEFLRYLDQFGKTRVHSHGCVFFGQPEPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 133

Query: 125 GGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKK--KIIITSK----SNNNPND 181
           GGS   NPFGNGAIRTYLREVKE QAKARGIPYKKKKKK+  ++++  +    +N+N ND
Sbjct: 134 GGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMMNKQQLPNNNSNNND 193

[Close]

BLAST of MS010933 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 108/141 (76.60%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 20  SQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVH 79
           S ++  V  SRYESQKRRDWNTFGQYLKNQ P V +S C+C HVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 80  SHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLR 139
             GC+F+G P+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG    NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 140 EVKECQAKARGIPYKKKKKKK 161
           EV+ECQAKARGIPYKKKKKKK
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS010933 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-57
Identity = 106/154 (68.83%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 7   ASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEF 66
           A+ + +SSSS   S       LSRYE+QKRRDWNTFGQYL+N  P +SLS C+  HVLEF
Sbjct: 25  ATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEF 84

Query: 67  LRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHA 126
           LRYLDQFGKT+VH+H C FFGHP+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGS   
Sbjct: 85  LRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPET 144

Query: 127 NPFGNGAIRTYLREVKECQAKARGIPYKKKKKKK 161
           NPFG  A+R YLREV++ QAKARGI Y+KKK+K+
Sbjct: 145 NPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of MS010933 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-56
Identity = 95/132 (71.97%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 29  SRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVHSHGCVFFGH 88
           SRYESQKRRDW TFGQYL+N  P + LS C+  HVLEFLRYLDQFGKT+VH+HGC FFGH
Sbjct: 22  SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCPFFGH 81

Query: 89  PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLREVKECQAKA 148
           P PPAPCPCPL+QAWGSLDAL+GRLRAA+EEHGG   +NPFG  A+R YLR++++ Q+KA
Sbjct: 82  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKA 141

Query: 149 RGIPYKKKKKKK 161
           RGI Y+KK++K+
Sbjct: 142 RGIAYEKKRRKR 153

[Close]

BLAST of MS010933 vs. ExPASy Swiss-Prot
Match: Q0E3M2 (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-56
Identity = 95/132 (71.97%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 29  SRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVHSHGCVFFGH 88
           SRYESQKRRDW TFGQYL+N  P + LS C+  HVLEFLRYLDQFGKT+VH+HGC FFGH
Sbjct: 22  SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCPFFGH 81

Query: 89  PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLREVKECQAKA 148
           P PPAPCPCPL+QAWGSLDAL+GRLRAA+EEHGG   +NPFG  A+R YLR++++ Q+KA
Sbjct: 82  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKA 141

Query: 149 RGIPYKKKKKKK 161
           RGI Y+KK++K+
Sbjct: 142 RGIAYEKKRRKR 153

[Close]

BLAST of MS010933 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.7e-56
Identity = 106/159 (66.67%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 3   GQGNASASASSSS-SDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCG 62
           G GN     SSSS S P   A A    SRYE+QKRRDWNTFGQYL+N  P +SL++C+  
Sbjct: 13  GGGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGA 72

Query: 63  HVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHG 122
           HVLEFLRYLDQFGKT+VH+  C FFGHP PPAPCPCPL+QAWGSLDAL+GRLRAA+EE+G
Sbjct: 73  HVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENG 132

Query: 123 GSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKK 161
           G   +NPF   A+R YLREV+E QA+ARG+ Y+KKK+KK
Sbjct: 133 GRPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKK 171

[Close]

BLAST of MS010933 vs. ExPASy TrEMBL
Match: A0A6J1CLC9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 GN=LOC111012341 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MLGQGNASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC 60
           MLGQ NASASASSS    Q+QAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC
Sbjct: 1   MLGQDNASASASSSDPQAQAQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNC 60

Query: 61  GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 120
           GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH
Sbjct: 61  GHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH 120

Query: 121 GGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSNNNPNDDPAPLT 180
           GGSSHANPFGNGAIRTYLREVKECQAKARGIPY+KKKKKKKIIITSKSNNNPNDD +PLT
Sbjct: 121 GGSSHANPFGNGAIRTYLREVKECQAKARGIPYQKKKKKKKIIITSKSNNNPNDDTSPLT 180

Query: 181 QMA 184
           QMA
Sbjct: 181 QMA 183

[Close]

BLAST of MS010933 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71
Identity = 137/174 (78.74%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 19  QSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRV 78
           Q+Q  A VPLSRYESQKRRDWNTFGQYLKNQ P VSLS CNC HVLEFLRYLDQFGKTRV
Sbjct: 36  QAQPGAVVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRV 95

Query: 79  HSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYL 138
           HSHGCVFFG PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGS   NPFGNGAIRTYL
Sbjct: 96  HSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYL 155

Query: 139 REVKECQAKARGIPYKKKKKKKKIIITSKSN----------NNPNDDPAPLTQM 183
           REVKE QAKARGIPYKKKKKK+       +N          NN ND  APLT +
Sbjct: 156 REVKESQAKARGIPYKKKKKKRNNQTMMMNNMNKQQLQQLPNNNNDTNAPLTHI 209

[Close]

BLAST of MS010933 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 137/175 (78.29%), Postives = 141/175 (80.57%), Query Frame = 0


Query: 19  QSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRV 78
           Q+Q  A VPLSRYESQKRRDWNTFGQYLKNQ P VSLS CNC HVLEFLRYLDQFGKTRV
Sbjct: 31  QAQPGAVVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRV 90

Query: 79  HSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYL 138
           HSHGCVFFG PDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGS   NPFGNGAIRTYL
Sbjct: 91  HSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYL 150

Query: 139 REVKECQAKARGIPYKKKKKKKKIIITSKSN-----------NNPNDDPAPLTQM 183
           REVKE QAKARGIPYKKKKKK+       +N           NN ND  APLT +
Sbjct: 151 REVKESQAKARGIPYKKKKKKRNNQTMMMNNMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of MS010933 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.2e-70
Identity = 146/194 (75.26%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 1   MLGQ---GNASASASSSSSDPQSQAQ--------AAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLG    G   +S+ S++ DPQ Q Q        +AVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  APAVSLSECNCGHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDAL 120
            P V LS CN  HVLEFLRYLDQFGKTRVHSHGCVFFG PDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEEHGGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSN 180
           IGRLRAAYEE GGS   NPFGNGAIR YLREVK+CQAKARGIPYKKKKKKK+  I  K N
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQII-KGN 180

Query: 181 NNPNDDPAPLTQMA 184
           +N ND  A LTQMA
Sbjct: 181 DN-NDTNAALTQMA 192

[Close]

BLAST of MS010933 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.5e-69
Identity = 140/184 (76.09%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 8   SASASSSSSDPQSQAQ--------AAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECN 67
           ++S+ S+++D Q Q Q        + VPLSRYESQKRRDWNTFGQYLKNQ P V LS CN
Sbjct: 10  ASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCN 69

Query: 68  CGHVLEFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE 127
             HVLEFLRYLDQFGKTRVHSHGCVFFG PDPPAPCPCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 70  YNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE 129

Query: 128 HGGSSHANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSNNNPNDDPAPL 184
            GGS   NPFGNGAIR YLREVK+CQAKARGIPYKKKKKKK+  I  K N+N ND  A L
Sbjct: 130 SGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQII-KGNDN-NDTNAAL 189

[Close]

BLAST of MS010933 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-62
Identity = 108/141 (76.60%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 20  SQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVH 79
           S ++  V  SRYESQKRRDWNTFGQYLKNQ P V +S C+C HVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 80  SHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLR 139
             GC+F+G P+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG    NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 140 EVKECQAKARGIPYKKKKKKK 161
           EV+ECQAKARGIPYKKKKKKK
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS010933 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-62
Identity = 108/141 (76.60%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 20  SQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRYLDQFGKTRVH 79
           S ++  V  SRYESQKRRDWNTFGQYLKNQ P V +S C+C HVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 80  SHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHANPFGNGAIRTYLR 139
             GC+F+G P+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG    NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 140 EVKECQAKARGIPYKKKKKKK 161
           EV+ECQAKARGIPYKKKKKKK
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS010933 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-58
Identity = 106/154 (68.83%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 7   ASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEF 66
           A+ + +SSSS   S       LSRYE+QKRRDWNTFGQYL+N  P +SLS C+  HVLEF
Sbjct: 25  ATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEF 84

Query: 67  LRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSSHA 126
           LRYLDQFGKT+VH+H C FFGHP+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGS   
Sbjct: 85  LRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPET 144

Query: 127 NPFGNGAIRTYLREVKECQAKARGIPYKKKKKKK 161
           NPFG  A+R YLREV++ QAKARGI Y+KKK+K+
Sbjct: 145 NPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of MS010933 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-56
Identity = 109/171 (63.74%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 10  SASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVLEFLRY 69
           S+SS+        Q   PLSRYESQKRRDWNTF QYLK+Q P + +S+ +  HVL FLRY
Sbjct: 17  SSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRY 76

Query: 70  LDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSS-HANP 129
           LDQFGKT+VH   CVFFG PDPP PC CPLKQAWGSLDALIGRLRAAYEEHGG S   NP
Sbjct: 77  LDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNP 136

Query: 130 FGNGAIRTYLREVKECQAKARGIPYKKKKKKK---KIIITSK---SNNNPN 174
           F NG+IR +LREV+E QAKARGIPY+KKK++K   ++++  K   +++ PN
Sbjct: 137 FANGSIRVHLREVRESQAKARGIPYRKKKRRKTKNEVVVVKKDVANSSTPN 187

[Close]

BLAST of MS010933 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 214.9 bits (546), Expect = 5.3e-56
Identity = 103/167 (61.68%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 5   GNASASASSSSSDPQSQAQAAVPLSRYESQKRRDWNTFGQYLKNQAPAVSLSECNCGHVL 64
           G  +    SSSS P + +      SRYE+QKRRDWNTFGQYL+N  P +SLS C+  HVL
Sbjct: 35  GGEATQPLSSSSSPSANS------SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 94

Query: 65  EFLRYLDQFGKTRVHSHGCVFFGHPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSS 124
           EFLRYLDQFGKT+VH++ C F+GHP+PPAPCPCPL+QAWGSLDALIGRLRAA+EE+GG  
Sbjct: 95  EFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKP 154

Query: 125 HANPFGNGAIRTYLREVKECQAKARGIPYKKKKKKKKIIITSKSNNN 172
             NPFG  A+R YLREV++ Q+KARG+ Y+KKK+K+ +  +S S+++
Sbjct: 155 ETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

The following BLAST results are available for this feature:

BLAST of MS010933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142146.1	1.2e-94	95.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Momordica charantia]	[more]
XP_008465528.1	5.5e-71	78.74	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
KAA0052619.1	7.1e-71	78.29	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_022926651.1	4.6e-70	75.26	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926...	[more]
XP_038881253.1	7.9e-70	74.73	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]

BLAST of MS010933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	3.1e-61	76.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LW68	3.6e-57	68.83	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
B8AIK3	2.3e-56	71.97	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]
Q0E3M2	2.3e-56	71.97	Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1	[more]
A2XVI8	6.7e-56	66.67	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of MS010933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLC9	5.9e-95	95.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 ...	[more]
A0A1S3CP28	2.6e-71	78.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UGI5	3.5e-71	78.29	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1EEZ4	2.2e-70	75.26	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KW42	2.5e-69	76.09	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of MS010933 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	2.2e-62	76.60	Protein of unknown function (DUF640)	[more]
AT2G42610.2	2.2e-62	76.60	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.5e-58	68.83	Protein of unknown function (DUF640)	[more]
AT4G18610.1	4.1e-56	63.74	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.3e-56	61.68	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..143 e-value: 3.4E-60 score: 201.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 30..157 score: 73.076508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..183
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 4..168
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010933.1	MS010933.1	mRNA