MS010887 (gene) Bitter gourd (TR) v1

Overview


Name	MS010887
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein E6-like
Location	scaffold35: 2744248 .. 2745042 (-)
RNA-Seq Expression	MS010887
Synteny	MS010887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCTGTTAACCTCTGTTCTGTTCTTGTTCTTCTCAGTCTTCTGTTACTCCAAATTCATGCAAGAGAGAGCAGCTTCTTCAGCAAAGTACCCAACAATGGCGTCAAGGAAGAAACCGAAATCCCCATCGAACCTTTAACAAAACCAGAAAAAAAAGAGCAGCAACAACAACAACAAGAGCCCAATTTCATCCCTCAAGCCCAAAACAGCGGCTACGGTCTCTACGGCCATGAATCCGGCCAGCTCCCTCCTTCCGACGCCAAATTCTCCGATCCGGCCGCCGGCCGCCCCTTCACCACCACCTCCACCAACTACAACTACCAAAACGACGACGCTTCGTACAAAGCCGAGTCGGAGGAGTACTACGAGGAGGAGGACAACAACAACAATAATGACTACAGCAACGACAACTTCCAAAACGGCAACTCGAAGCCGTACGAGAATTCGTTTTACTACAACAAGGATCTTTACGACAACGGACGACGGAACTTCGGGAGCACGAGACTCTCACGTGGCGATTACACCACAACTCCGTTATACGAGCAGGAAAAAAACAGTTATTACAATGGCGGCGGCGTGGCGGAGAGACAAGGGATGAGCGACACGAGGTTCATGGAGAATGGAAAATACTTTTATGACCTCGACAGGGAGCCTCACCACTACAGAAAGCCCAGGGGTTATTTTGGTAATACCAATGGCAACACGTACGAGTACGGTAACTCCATGGCAGGAAGCAGGTACCAGAACGGCGGCGCAGAGTTCCAGGAGGAACCCGACCAGTTCGTGCCA

mRNA sequence

ATGGCTTCCTCTGTTAACCTCTGTTCTGTTCTTGTTCTTCTCAGTCTTCTGTTACTCCAAATTCATGCAAGAGAGAGCAGCTTCTTCAGCAAAGTACCCAACAATGGCGTCAAGGAAGAAACCGAAATCCCCATCGAACCTTTAACAAAACCAGAAAAAAAAGAGCAGCAACAACAACAACAAGAGCCCAATTTCATCCCTCAAGCCCAAAACAGCGGCTACGGTCTCTACGGCCATGAATCCGGCCAGCTCCCTCCTTCCGACGCCAAATTCTCCGATCCGGCCGCCGGCCGCCCCTTCACCACCACCTCCACCAACTACAACTACCAAAACGACGACGCTTCGTACAAAGCCGAGTCGGAGGAGTACTACGAGGAGGAGGACAACAACAACAATAATGACTACAGCAACGACAACTTCCAAAACGGCAACTCGAAGCCGTACGAGAATTCGTTTTACTACAACAAGGATCTTTACGACAACGGACGACGGAACTTCGGGAGCACGAGACTCTCACGTGGCGATTACACCACAACTCCGTTATACGAGCAGGAAAAAAACAGTTATTACAATGGCGGCGGCGTGGCGGAGAGACAAGGGATGAGCGACACGAGGTTCATGGAGAATGGAAAATACTTTTATGACCTCGACAGGGAGCCTCACCACTACAGAAAGCCCAGGGGTTATTTTGGTAATACCAATGGCAACACGTACGAGTACGGTAACTCCATGGCAGGAAGCAGGTACCAGAACGGCGGCGCAGAGTTCCAGGAGGAACCCGACCAGTTCGTGCCA

Coding sequence (CDS)

ATGGCTTCCTCTGTTAACCTCTGTTCTGTTCTTGTTCTTCTCAGTCTTCTGTTACTCCAAATTCATGCAAGAGAGAGCAGCTTCTTCAGCAAAGTACCCAACAATGGCGTCAAGGAAGAAACCGAAATCCCCATCGAACCTTTAACAAAACCAGAAAAAAAAGAGCAGCAACAACAACAACAAGAGCCCAATTTCATCCCTCAAGCCCAAAACAGCGGCTACGGTCTCTACGGCCATGAATCCGGCCAGCTCCCTCCTTCCGACGCCAAATTCTCCGATCCGGCCGCCGGCCGCCCCTTCACCACCACCTCCACCAACTACAACTACCAAAACGACGACGCTTCGTACAAAGCCGAGTCGGAGGAGTACTACGAGGAGGAGGACAACAACAACAATAATGACTACAGCAACGACAACTTCCAAAACGGCAACTCGAAGCCGTACGAGAATTCGTTTTACTACAACAAGGATCTTTACGACAACGGACGACGGAACTTCGGGAGCACGAGACTCTCACGTGGCGATTACACCACAACTCCGTTATACGAGCAGGAAAAAAACAGTTATTACAATGGCGGCGGCGTGGCGGAGAGACAAGGGATGAGCGACACGAGGTTCATGGAGAATGGAAAATACTTTTATGACCTCGACAGGGAGCCTCACCACTACAGAAAGCCCAGGGGTTATTTTGGTAATACCAATGGCAACACGTACGAGTACGGTAACTCCATGGCAGGAAGCAGGTACCAGAACGGCGGCGCAGAGTTCCAGGAGGAACCCGACCAGTTCGTGCCA

Protein sequence

MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDASYKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTPLYEQEKNSYYNGGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQFVP

Homology

[Close]

BLAST of MS010887 vs. NCBI nr
Match: XP_022142077.1 (protein E6-like [Momordica charantia])

HSP 1 Score: 508.1 bits (1307), Expect = 4.7e-140
Identity = 261/269 (97.03%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKEQQQQQ 60
           MASSV LCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKP KKEQQQQQ
Sbjct: 1   MASSVKLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPGKKEQQQQQ 60

Query: 61  QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDASYKAES 120
           QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDD SYKAES
Sbjct: 61  QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDVSYKAES 120

Query: 121 EEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP 180
           EEYYEEED+NNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP
Sbjct: 121 EEYYEEEDSNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP 180

Query: 181 LYEQEKNSYYN----GGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN 240
           LYEQEKNSYYN    GGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN
Sbjct: 181 LYEQEKNSYYNGGGGGGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN 240

Query: 241 TYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           TYEYGNSMAGSRYQNGGAEFQEEPDQFVP
Sbjct: 241 TYEYGNSMAGSRYQNGGAEFQEEPDQFVP 269

[Close]

BLAST of MS010887 vs. NCBI nr
Match: KAA0052668.1 (protein E6 [Cucumis melo var. makuwa] >TYK13157.1 protein E6 [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 3.7e-76
Identity = 184/303 (60.73%), Postives = 219/303 (72.28%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESS-FFSKVPNNGV--------KEETEIP----IEP 60
           MASS  L + +++L+LL +QIHARES  FFSK+PNN V         +ET+IP    ++P
Sbjct: 1   MASSPKLFTSILILTLLFIQIHARESKYFFSKIPNNNVHNNNNNFDAKETQIPNDENVDP 60

Query: 61  LTKPEKKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAK-FSDPAA--GRPFTTT 120
           LT PEK     Q Q+PNFIPQ Q++GYGLYGHESGQLPP SD+K FSD +   GR FTTT
Sbjct: 61  LTNPEKTTTSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSFTTT 120

Query: 121 STNYN----YQNDDAS-YKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDL 180
           +T  N    ++ND  S YK+ESEEYY  EDNNNNN++    F+N NSKPYENSFYYNKDL
Sbjct: 121 TTYDNNDNKFRNDVVSNYKSESEEYYNYEDNNNNNNF--QTFENSNSKPYENSFYYNKDL 180

Query: 181 YDNGRRNFGSTRLSRGDYTTTPLYEQEK-NSYY---NGGGVAE-------RQGMSDTRFM 240
           YDNGR++F +TRLSR DYTTTPLY+Q K +++Y   NGGG          RQGMSDTRFM
Sbjct: 181 YDNGRQSFQNTRLSRDDYTTTPLYDQGKYDNFYNSNNGGGDNNNNGNNMVRQGMSDTRFM 240

Query: 241 ENGKYFYDLDREPHHYRKPRGYFG-----NTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQ 266
           ENGKY+YDLDREPHHY + RGYFG     N N N+YEYGNSM   + QN  AEFQEEPD+
Sbjct: 241 ENGKYYYDLDREPHHYSRSRGYFGNNINNNNNRNSYEYGNSMGRYQNQNDEAEFQEEPDE 300

[Close]

BLAST of MS010887 vs. NCBI nr
Match: XP_008441080.1 (PREDICTED: protein E6 [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 4.8e-76
Identity = 184/304 (60.53%), Postives = 219/304 (72.04%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESS-FFSKVPNNGV---------KEETEIP----IE 60
           MASS  L + +++L+LL +QIHARES  FFSK+PNN V          +ET+IP    ++
Sbjct: 1   MASSPKLFTSILILTLLFIQIHARESKYFFSKIPNNNVDNNNNNNFDAKETQIPNDENVD 60

Query: 61  PLTKPEKKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAK-FSDPAA--GRPFTT 120
           PLT PEK     Q Q+PNFIPQ Q++GYGLYGHESGQLPP SD+K FSD +   GR FTT
Sbjct: 61  PLTNPEKTTTSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSFTT 120

Query: 121 TSTNYN----YQNDDAS-YKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKD 180
           T+T  N    ++ND  S YK+ESEEYY  EDNNNNN++    F+N NSKPYENSFYYNKD
Sbjct: 121 TTTYDNNDNKFRNDVVSNYKSESEEYYNYEDNNNNNNF--QTFENSNSKPYENSFYYNKD 180

Query: 181 LYDNGRRNFGSTRLSRGDYTTTPLYEQEK-NSYY---NGGGVAE-------RQGMSDTRF 240
           LYDNGR++F +TRLSR DYTTTPLY+Q K +++Y   NGGG          RQGMSDTRF
Sbjct: 181 LYDNGRQSFQNTRLSRDDYTTTPLYDQGKYDNFYNSNNGGGDNNNNGNNMVRQGMSDTRF 240

Query: 241 MENGKYFYDLDREPHHYRKPRGYFG-----NTNGNTYEYGNSMAGSRYQNGGAEFQEEPD 266
           MENGKY+YDLDREPHHY + RGYFG     N N N+YEYGNSM   + QN  AEFQEEPD
Sbjct: 241 MENGKYYYDLDREPHHYSRSRGYFGNNINNNNNRNSYEYGNSMGRYQNQNDEAEFQEEPD 300

[Close]

BLAST of MS010887 vs. NCBI nr
Match: XP_038883950.1 (protein E6-like [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 1.7e-73
Identity = 182/295 (61.69%), Postives = 209/295 (70.85%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESS-FFSKVPNNGV----KEETEIP---IEPLTKPE 60
           MASS  L + ++LLSLLL+QIHARES  FFSKVPNN V     +ET++P   I+PLT PE
Sbjct: 1   MASSPKLLTSILLLSLLLIQIHARESKYFFSKVPNNNVDNFDAKETQLPNNKIDPLTNPE 60

Query: 61  KKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAKFSDPAAGRPFTTTSTNY---N 120
           K     Q QEPNFIPQ Q++ YGLYGHESGQLPP SD KFS    GRPFTTT+T Y   N
Sbjct: 61  KTTTTPQDQEPNFIPQTQDNSYGLYGHESGQLPPNSDNKFS--GGGRPFTTTTTTYDNNN 120

Query: 121 YQNDDA--SYKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNF 180
           Y  +DA  + K ESEEYY    N NNNDY N+ F+N  SKPYENSFYYNKDLYDNG+++F
Sbjct: 121 YYRNDAVPNNKPESEEYY----NYNNNDY-NEYFENSKSKPYENSFYYNKDLYDNGQQSF 180

Query: 181 GSTRLSRGDYTTTPLYEQEK--NSYYNGGGVAE-----------RQGMSDTRFMENGKYF 240
            +TRLS+ DY TTPLY+Q K  N Y N  G              RQGMSDTRFMENGKY+
Sbjct: 181 QNTRLSQDDY-TTPLYDQGKYDNFYSNNNGRGSSNNNDNGNNVVRQGMSDTRFMENGKYY 240

Query: 241 YDLDREPHHYRKPRGYFGNTNG---NTYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           YDL+REPHHY + RGYFGN N    NTYEYGNSM   + QN  AEFQEEP++FVP
Sbjct: 241 YDLNREPHHYSRSRGYFGNNNNNNPNTYEYGNSMGRYQNQNDEAEFQEEPNEFVP 287

[Close]

BLAST of MS010887 vs. NCBI nr
Match: XP_022978743.1 (protein E6-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 4.6e-71
Identity = 171/289 (59.17%), Postives = 195/289 (67.47%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNG---VKEETEIP-----IEPLTKPE 60
           MASS  L S L LL+LL +Q+HARES FFSKVPNNG     +ET+IP      +PLT P+
Sbjct: 1   MASSTKLISTL-LLALLFIQVHARESHFFSKVPNNGGTFYTKETQIPNKEEEEDPLTNPQ 60

Query: 61  KKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAKFSDPAAGRPFTTTSTNYNYQN 120
           K     Q  +PNF+PQ Q++ YGLYGHESGQLPP SD  FS     RP      N   +N
Sbjct: 61  KTSGTPQDHDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFS---GDRP----DDNKYRRN 120

Query: 121 DDASYKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRL 180
           D  SYK+ESEE+Y+           NDNFQNGN+KPYENSFYYNKDLYDNGR++F +TRL
Sbjct: 121 DAVSYKSESEEFYD-----------NDNFQNGNTKPYENSFYYNKDLYDNGRQSFRNTRL 180

Query: 181 SRGDYTTTPLYEQEK-------NSYY-----NGGGVAERQGMSDTRFMENGKYFYDLDRE 240
           SR DYTTTPLY QEK       N YY     N      RQGMSDTRFMENGKY+YDLDRE
Sbjct: 181 SRNDYTTTPLYNQEKYHDDDDNNFYYNSNNNNNANNVVRQGMSDTRFMENGKYYYDLDRE 240

Query: 241 PHHYRKPRGYF---GNTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           PHHY + RGYF    N NGNTY+YGNSM   + QN  AEFQEE D+FVP
Sbjct: 241 PHHYSRSRGYFRTNNNNNGNTYKYGNSMGRYQNQNDEAEFQEELDEFVP 270

[Close]

BLAST of MS010887 vs. ExPASy Swiss-Prot
Match: Q01197 (Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-21
Identity = 97/282 (34.40%), Postives = 138/282 (48.94%), Query Frame = 0


Query: 1   MASSVNL--CSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKE--- 60
           MASS  L   S+L L +L  +QIHARE  +FSK P   + E+     E  T+ +K E   
Sbjct: 1   MASSPKLFSMSILFLFALFSMQIHARE--YFSKFPRVNINEK-----ETTTREQKHETFV 60

Query: 61  ----QQQQQQEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQN 120
               Q+ ++QEP FIP+ QN GYGLYGHESG   PS            FTT  T   Y+ 
Sbjct: 61  PQTTQKPEEQEPRFIPETQN-GYGLYGHESGSSRPS------------FTTKET---YEP 120

Query: 121 DDASYKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGR-RNFGSTR 180
                +   +E Y     ++NN               ++++YYNK+ Y++ + +N G   
Sbjct: 121 YVTPVRFHPDEPYNSIPESSNN---------------KDTYYYNKNAYESTKQQNLGEAI 180

Query: 181 LSRGDYTTTPLYEQEKNSYYNGG---GVAERQGMSDTRFMENGKYFYDLDRE----PHHY 240
            +   ++T    E + N+YYNG       E+QGMSDTR++ENGKY+YD+  E    P+ +
Sbjct: 181 FTEKGWSTK---ENQNNNYYNGNNGYNNGEKQGMSDTRYLENGKYYYDVKSENNYYPNRF 238

Query: 241 RKPRGYFGNTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
              RG       N   Y N     RY     EF+E  ++F P
Sbjct: 241 DNSRGVASRNEFNENRYNNM---GRYHQNQEEFEESEEEFEP 238

[Close]

BLAST of MS010887 vs. ExPASy TrEMBL
Match: A0A6J1CLM0 (protein E6-like OS=Momordica charantia OX=3673 GN=LOC111012294 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.3e-140
Identity = 261/269 (97.03%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKEQQQQQ 60
           MASSV LCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKP KKEQQQQQ
Sbjct: 1   MASSVKLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPGKKEQQQQQ 60

Query: 61  QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDASYKAES 120
           QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDD SYKAES
Sbjct: 61  QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDVSYKAES 120

Query: 121 EEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP 180
           EEYYEEED+NNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP
Sbjct: 121 EEYYEEEDSNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTP 180

Query: 181 LYEQEKNSYYN----GGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN 240
           LYEQEKNSYYN    GGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN
Sbjct: 181 LYEQEKNSYYNGGGGGGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGYFGNTNGN 240

Query: 241 TYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           TYEYGNSMAGSRYQNGGAEFQEEPDQFVP
Sbjct: 241 TYEYGNSMAGSRYQNGGAEFQEEPDQFVP 269

[Close]

BLAST of MS010887 vs. ExPASy TrEMBL
Match: A0A5D3CMI3 (Protein E6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007690 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.8e-76
Identity = 184/303 (60.73%), Postives = 219/303 (72.28%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESS-FFSKVPNNGV--------KEETEIP----IEP 60
           MASS  L + +++L+LL +QIHARES  FFSK+PNN V         +ET+IP    ++P
Sbjct: 1   MASSPKLFTSILILTLLFIQIHARESKYFFSKIPNNNVHNNNNNFDAKETQIPNDENVDP 60

Query: 61  LTKPEKKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAK-FSDPAA--GRPFTTT 120
           LT PEK     Q Q+PNFIPQ Q++GYGLYGHESGQLPP SD+K FSD +   GR FTTT
Sbjct: 61  LTNPEKTTTSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSFTTT 120

Query: 121 STNYN----YQNDDAS-YKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDL 180
           +T  N    ++ND  S YK+ESEEYY  EDNNNNN++    F+N NSKPYENSFYYNKDL
Sbjct: 121 TTYDNNDNKFRNDVVSNYKSESEEYYNYEDNNNNNNF--QTFENSNSKPYENSFYYNKDL 180

Query: 181 YDNGRRNFGSTRLSRGDYTTTPLYEQEK-NSYY---NGGGVAE-------RQGMSDTRFM 240
           YDNGR++F +TRLSR DYTTTPLY+Q K +++Y   NGGG          RQGMSDTRFM
Sbjct: 181 YDNGRQSFQNTRLSRDDYTTTPLYDQGKYDNFYNSNNGGGDNNNNGNNMVRQGMSDTRFM 240

Query: 241 ENGKYFYDLDREPHHYRKPRGYFG-----NTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQ 266
           ENGKY+YDLDREPHHY + RGYFG     N N N+YEYGNSM   + QN  AEFQEEPD+
Sbjct: 241 ENGKYYYDLDREPHHYSRSRGYFGNNINNNNNRNSYEYGNSMGRYQNQNDEAEFQEEPDE 300

[Close]

BLAST of MS010887 vs. ExPASy TrEMBL
Match: A0A1S3B2M6 (protein E6 OS=Cucumis melo OX=3656 GN=LOC103485307 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.3e-76
Identity = 184/304 (60.53%), Postives = 219/304 (72.04%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESS-FFSKVPNNGV---------KEETEIP----IE 60
           MASS  L + +++L+LL +QIHARES  FFSK+PNN V          +ET+IP    ++
Sbjct: 1   MASSPKLFTSILILTLLFIQIHARESKYFFSKIPNNNVDNNNNNNFDAKETQIPNDENVD 60

Query: 61  PLTKPEKKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAK-FSDPAA--GRPFTT 120
           PLT PEK     Q Q+PNFIPQ Q++GYGLYGHESGQLPP SD+K FSD +   GR FTT
Sbjct: 61  PLTNPEKTTTSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSFTT 120

Query: 121 TSTNYN----YQNDDAS-YKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKD 180
           T+T  N    ++ND  S YK+ESEEYY  EDNNNNN++    F+N NSKPYENSFYYNKD
Sbjct: 121 TTTYDNNDNKFRNDVVSNYKSESEEYYNYEDNNNNNNF--QTFENSNSKPYENSFYYNKD 180

Query: 181 LYDNGRRNFGSTRLSRGDYTTTPLYEQEK-NSYY---NGGGVAE-------RQGMSDTRF 240
           LYDNGR++F +TRLSR DYTTTPLY+Q K +++Y   NGGG          RQGMSDTRF
Sbjct: 181 LYDNGRQSFQNTRLSRDDYTTTPLYDQGKYDNFYNSNNGGGDNNNNGNNMVRQGMSDTRF 240

Query: 241 MENGKYFYDLDREPHHYRKPRGYFG-----NTNGNTYEYGNSMAGSRYQNGGAEFQEEPD 266
           MENGKY+YDLDREPHHY + RGYFG     N N N+YEYGNSM   + QN  AEFQEEPD
Sbjct: 241 MENGKYYYDLDREPHHYSRSRGYFGNNINNNNNRNSYEYGNSMGRYQNQNDEAEFQEEPD 300

[Close]

BLAST of MS010887 vs. ExPASy TrEMBL
Match: A0A6J1IU58 (protein E6-like OS=Cucurbita maxima OX=3661 GN=LOC111478608 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.2e-71
Identity = 171/289 (59.17%), Postives = 195/289 (67.47%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNG---VKEETEIP-----IEPLTKPE 60
           MASS  L S L LL+LL +Q+HARES FFSKVPNNG     +ET+IP      +PLT P+
Sbjct: 1   MASSTKLISTL-LLALLFIQVHARESHFFSKVPNNGGTFYTKETQIPNKEEEEDPLTNPQ 60

Query: 61  KKEQQQQQQEPNFIPQAQNSGYGLYGHESGQLPP-SDAKFSDPAAGRPFTTTSTNYNYQN 120
           K     Q  +PNF+PQ Q++ YGLYGHESGQLPP SD  FS     RP      N   +N
Sbjct: 61  KTSGTPQDHDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFS---GDRP----DDNKYRRN 120

Query: 121 DDASYKAESEEYYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRL 180
           D  SYK+ESEE+Y+           NDNFQNGN+KPYENSFYYNKDLYDNGR++F +TRL
Sbjct: 121 DAVSYKSESEEFYD-----------NDNFQNGNTKPYENSFYYNKDLYDNGRQSFRNTRL 180

Query: 181 SRGDYTTTPLYEQEK-------NSYY-----NGGGVAERQGMSDTRFMENGKYFYDLDRE 240
           SR DYTTTPLY QEK       N YY     N      RQGMSDTRFMENGKY+YDLDRE
Sbjct: 181 SRNDYTTTPLYNQEKYHDDDDNNFYYNSNNNNNANNVVRQGMSDTRFMENGKYYYDLDRE 240

Query: 241 PHHYRKPRGYF---GNTNGNTYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           PHHY + RGYF    N NGNTY+YGNSM   + QN  AEFQEE D+FVP
Sbjct: 241 PHHYSRSRGYFRTNNNNNGNTYKYGNSMGRYQNQNDEAEFQEELDEFVP 270

[Close]

BLAST of MS010887 vs. ExPASy TrEMBL
Match: A0A6J1EM79 (protein E6 OS=Cucurbita moschata OX=3662 GN=LOC111433831 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69
Identity = 177/293 (60.41%), Postives = 201/293 (68.60%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKEQQQQQ 60
           MASS  L S L LLSL  +QIH RES+FFSKVPNN  + +    ++PLT  E K    Q 
Sbjct: 1   MASSTKLLS-LFLLSLFFIQIHGRESNFFSKVPNNNGESQIPNKVDPLTNSE-KTTTPQD 60

Query: 61  QEPNFIPQAQNSGYGLYGHESGQLPPSDAKFSDPAA---GRPFTTTST-----NYNYQND 120
           Q+PNFIPQ Q++GYGLYGHESGQ  PSDAKFSDP A   GRPF+TT+T     N   +ND
Sbjct: 61  QDPNFIPQTQDNGYGLYGHESGQFSPSDAKFSDPNARTGGRPFSTTTTYDDGENNYKRND 120

Query: 121 DASYKAESEEYYEEEDNNNNNDYSNDNFQNGN-SKPYENSFYYNKDLYDNGRRNFGSTRL 180
           D SYK+ESEEYY     N NN+Y+NDNFQN N  KPYENSFYYNKDLYDN R++F +TRL
Sbjct: 121 DVSYKSESEEYY-----NYNNNYNNDNFQNSNWKKPYENSFYYNKDLYDNRRQSFQNTRL 180

Query: 181 SRGDY----TTTPLYEQEK-------NSYY------NGGGVAERQGMSDTRFMENGKYFY 240
           SR +Y    TTTP Y++EK       N++Y      N   VA RQGMSDTRFMENGKYFY
Sbjct: 181 SRNEYATTTTTTPSYDEEKYNDDNNNNNFYANNRNDNENNVA-RQGMSDTRFMENGKYFY 240

Query: 241 DLDREPHHY-RKPRGYFGNTNG-NTYEYGNSMAGSRYQNGGAEFQEEPDQFVP 266
           DL REP H  R  R  F N N  NTYEYGNSM   RYQN   EFQEE D+FVP
Sbjct: 241 DLHREPQHQSRSSRNNFRNNNNYNTYEYGNSM--GRYQNDETEFQEESDEFVP 283

[Close]

BLAST of MS010887 vs. TAIR 10
Match: AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-16
Identity = 97/288 (33.68%), Postives = 130/288 (45.14%), Query Frame = 0


Query: 1   MASSVNLCSVLVLLSLLLL--QIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKKEQQQ 60
           MA S + C    LL+L+L   QI AR S  F K      KE+    + P+   EKKE   
Sbjct: 1   MAFSTSSCLFFFLLTLVLFSTQISARNSYSFGKFQREDPKEQNPNNLVPIETNEKKE--P 60

Query: 61  QQQEPNFIPQAQNSGYGLYGHESGQLPPS-------------DAKFSDPAAGRPFTTTST 120
             Q P FIPQ++N GYGLYGHE+                   D  FS P+      T  T
Sbjct: 61  DDQNPAFIPQSEN-GYGLYGHETTDNNNEELNNNKYEDNVNYDDSFSTPSLSE---TAQT 120

Query: 121 NYNYQNDDASYKAESEEYYEEEDNN---NNNDYSNDNFQNGNSKPYENSFYYNKDL-YDN 180
             +Y+N   SY   +E Y   +D +   N+N Y  D   N  + PY+   Y NKD  Y  
Sbjct: 121 QESYKNYKESYPKTTEIYDNNKDTSYYENSNAYGTDKRDNDINDPYKG--YSNKDTSYYE 180

Query: 181 GRRNFGSTRLSRGDYTTTPLYEQEKNSYYNG-GGVAERQGMSDTRFMENGKYFYDLDREP 240
               +G+ +             +EK   Y G     ERQGMSDTR+M NGKY+YDLD + 
Sbjct: 181 NPNTYGTEK-------------REKEPAYRGYNNNVERQGMSDTRYMANGKYYYDLDDDR 240

Query: 241 HHYRKPRGYFGNTNGNTYEYGNSMAGSRY-QNGGAEF--QEEPDQFVP 266
           +H R  + ++ N     Y    S   + Y  N  +E   +E+ DQ  P
Sbjct: 241 NHGRFYQNHYYNYKPTGYNEKKSNFKNPYDSNQQSEMLGEEQGDQITP 267

[Close]

BLAST of MS010887 vs. TAIR 10
Match: AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-15
Identity = 95/311 (30.55%), Postives = 139/311 (44.69%), Query Frame = 0


Query: 14  LSLLLLQIHARESSFFSKVPNNGVKEETEIPIEPLTKPEKK-------EQQQQQQEPNFI 73
           L LL  QIHAR+S FF K      K++      PL   EK         +++Q+Q+P F+
Sbjct: 16  LVLLSTQIHARDSYFFGKFHRESPKDQNPNSFIPLETSEKTTVEESVLNKKEQEQDPTFV 75

Query: 74  PQAQNSGYGLYGHESGQLPPSD--------AKFSDPAAGRPFTTTS---TNYNYQNDDAS 133
           P++ N GYGLYGHE+     +D         K  +    + F+T S   T  ++ N + +
Sbjct: 76  PESGN-GYGLYGHETTYNNNNDNKEEFNNNNKNDEKVNSKTFSTPSLSETEESFNNYEEN 135

Query: 134 YKAESEE-----YYEEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTR 193
           Y  ++E      Y  EE NNNNN Y  +  +  N+  Y+ ++   +   +N   N+    
Sbjct: 136 YPKKTENYGTKGYNNEEFNNNNNKYDANFKEEFNNNKYDENYAKEEFNNNNNNNNYNYKY 195

Query: 194 LSRGDYTTTP-LYEQEKNSYYNGGGVA----------------ERQGMSDTRFMENGKYF 253
                  + P   E  K + YN                     ERQGMSDTRFME G Y+
Sbjct: 196 DENVKEESFPENNEDNKKNVYNSNAYGTELERETPYKGYSHNLERQGMSDTRFMEKGSYY 255

Query: 254 YDL--DR-EPHHYRK-----PRGYFG------NTNGNTYEYGNSMAGSRYQ---NGGAE- 265
           YDL  DR   H+YRK     P GY+       N    +Y YGN+   + ++   N   E 
Sbjct: 256 YDLYNDRNHGHYYRKSHSKSPAGYYSSPATETNYEQQSYSYGNNNEENSFKDPYNSKWEK 315

[Close]

BLAST of MS010887 vs. TAIR 10
Match: AT1G03820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04
Identity = 68/251 (27.09%), Postives = 103/251 (41.04%), Query Frame = 0


Query: 11  LVLLSLLLLQIHARESS-FFSKVPNNGVKEETEIPIEPLTKPEKKEQQQQQQEPNFIPQA 70
           + +   ++  + ARE   FFSK  +       ++ + P   P              + QA
Sbjct: 13  IAVFCFIVHNVEAREGKLFFSKFTHIDRPNNKDVALSPAPAPG-------------LAQA 72

Query: 71  QNS-GYGLYGHESGQLPPSDAKFSDPAAGRPFTTTSTNYNYQNDDASYKAESE----EYY 130
               G G +G  SG +P +   +       P ++T+T+  ++   A++  E      E +
Sbjct: 73  NGRLGNGSFGPGSGMIPQTKESW-------PSSSTTTDEEFEKLMATFDEEKNTKLPEAF 132

Query: 131 EEEDNNNNNDYSNDNFQNGNSKPYENSFYYNKDLYDNGRRNFGSTRLSRGDYTTTPLYEQ 190
           EEE+ + +++  N+                 KD Y+N   N G T      YTT   Y  
Sbjct: 133 EEEEESEDSEDLNE----------------PKDKYNNNNNNNGYT------YTTNN-YND 192

Query: 191 EKNSYYNGGGVAERQGMSDTRFMENGKYFYDLDREPHHYRKPRGY---FGNTNGNTY--- 249
               Y   G   E+QGMSDTR MENGKYFYD           RGY    GN + N +   
Sbjct: 193 NGRGY---GNEEEKQGMSDTRVMENGKYFYDTRGRNSENTPSRGYENARGNDHTNEFETM 217

The following BLAST results are available for this feature:

BLAST of MS010887 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142077.1	4.7e-140	97.03	protein E6-like [Momordica charantia]	[more]
KAA0052668.1	3.7e-76	60.73	protein E6 [Cucumis melo var. makuwa] >TYK13157.1 protein E6 [Cucumis melo var. ...	[more]
XP_008441080.1	4.8e-76	60.53	PREDICTED: protein E6 [Cucumis melo]	[more]
XP_038883950.1	1.7e-73	61.69	protein E6-like [Benincasa hispida]	[more]
XP_022978743.1	4.6e-71	59.17	protein E6-like [Cucurbita maxima]	[more]

BLAST of MS010887 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01197	4.6e-21	34.40	Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1	[more]

BLAST of MS010887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLM0	2.3e-140	97.03	protein E6-like OS=Momordica charantia OX=3673 GN=LOC111012294 PE=4 SV=1	[more]
A0A5D3CMI3	1.8e-76	60.73	Protein E6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007690 PE...	[more]
A0A1S3B2M6	2.3e-76	60.53	protein E6 OS=Cucumis melo OX=3656 GN=LOC103485307 PE=4 SV=1	[more]
A0A6J1IU58	2.2e-71	59.17	protein E6-like OS=Cucurbita maxima OX=3661 GN=LOC111478608 PE=4 SV=1	[more]
A0A6J1EM79	1.2e-69	60.41	protein E6 OS=Cucurbita moschata OX=3662 GN=LOC111433831 PE=4 SV=1	[more]

BLAST of MS010887 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33850.1	5.9e-16	33.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28400.1	1.7e-15	30.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G03820.1	2.3e-04	27.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57
None	No IPR available	PANTHER	PTHR35274:SF2	E6-LIKE PROTEIN	coord: 1..265
IPR040290	Protein E6-like	PANTHER	PTHR35274	E6-LIKE PROTEIN	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010887.1	MS010887.1	mRNA