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MS010885 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCACCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCAGATCAACCGTAGCGCGGGCCGCTATCTCCGGGAGACTTACCGGCGGTGCCAAAGTGAAATCAGCGCGTTCTCCGTTCGGCATGCCCAAGCAGAACCCACTCTCCCAATCCCATCGCATTTTGAGGTAAATTTTCGATGCAACTTTTCTGTTTTTTGGATTCTGTTATGCGTGTGACAAACTTGTGCTGTGATTTGTGAAGGTCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACCGCATCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGGAGTTACGGTTGGACCCCTGAAGGTATTTCCTTGCTCCTATCGTGGAATTGTTCTCTC ATGTCCACCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCAGATCAACCGTAGCGCGGGCCGCTATCTCCGGGAGACTTACCGGCGGTGCCAAAGTGAAATCAGCGCGTTCTCCGTTCGGCATGCCCAAGCAGAACCCACTCTCCCAATCCCATCGCATTTTGAGGTCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACCGCATCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGGAGTTACGGTTGGACCCCTGAAGGTATTTCCTTGCTCCTATCGTGGAATTGTTCTCTC ATGTCCACCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCAGATCAACCGTAGCGCGGGCCGCTATCTCCGGGAGACTTACCGGCGGTGCCAAAGTGAAATCAGCGCGTTCTCCGTTCGGCATGCCCAAGCAGAACCCACTCTCCCAATCCCATCGCATTTTGAGGTCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACCGCATCTGCATTGCTTACGTCTATGCTTTCCGTCTCTCGTCGGAGTTACGGTTGGACCCCTGAAGGTATTTCCTTGCTCCTATCGTGGAATTGTTCTCTC MSTAAAMAARSALRSTVARAAISGRLTGGAKVKSARSPFGMPKQNPLSQSHRILRSPVEMSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEGISLLLSWNCSL Homology
BLAST of MS010885 vs. NCBI nr
Match: XP_022142288.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 [Momordica charantia]) HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of MS010885 vs. NCBI nr
Match: XP_022142284.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Momordica charantia]) HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of MS010885 vs. NCBI nr
Match: XP_022142285.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Momordica charantia]) HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. NCBI nr
Match: XP_022142286.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Momordica charantia] >XP_022142287.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Momordica charantia]) HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. NCBI nr
Match: XP_022142289.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 [Momordica charantia]) HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10 Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 0
BLAST of MS010885 vs. ExPASy TrEMBL
Match: A0A6J1CL53 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of MS010885 vs. ExPASy TrEMBL
Match: A0A6J1CMX8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of MS010885 vs. ExPASy TrEMBL
Match: A0A6J1CMC1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 8.3e-41 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. ExPASy TrEMBL
Match: A0A6J1CKI3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 8.3e-41 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. ExPASy TrEMBL
Match: A0A6J1CL58 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 8.3e-41 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of MS010885 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19 Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 0
BLAST of MS010885 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.9 bits (224), Expect = 6.7e-19 Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 0
BLAST of MS010885 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 88.6 bits (218), Expect = 3.3e-18 Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 0
BLAST of MS010885 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 88.6 bits (218), Expect = 3.3e-18 Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 0
BLAST of MS010885 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 88.6 bits (218), Expect = 3.3e-18 Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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