MS010883 (gene) Bitter gourd (TR) v1

Overview
NameMS010883
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDYW_deaminase domain-containing protein
Locationscaffold35: 2722103 .. 2722216 (-)
RNA-Seq ExpressionMS010883
SyntenyMS010883
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTGGAGCTTTTCGTCTTGGGCTGTACCGGAGTTGTGGTCTTCCTCCATGGCGCTAATTTCTTCTTCCACGCTTTCTGGCACCGCTTCACCGTCCGATCTCTCAGGTAC

mRNA sequence

ATGGCGTTGGAGCTTTTCGTCTTGGGCTGTACCGGAGTTGTGGTCTTCCTCCATGGCGCTAATTTCTTCTTCCACGCTTTCTGGCACCGCTTCACCGTCCGATCTCTCAGGTAC

Coding sequence (CDS)

ATGGCGTTGGAGCTTTTCGTCTTGGGCTGTACCGGAGTTGTGGTCTTCCTCCATGGCGCTAATTTCTTCTTCCACGCTTTCTGGCACCGCTTCACCGTCCGATCTCTCAGGTAC

Protein sequence

MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLRY
Homology
BLAST of MS010883 vs. NCBI nr
Match: KAG7034606.1 (hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLRY 39
          MALEL VLGCTGVV+FLHGANFFFHA W  FTVRSLR+
Sbjct: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRH 38

BLAST of MS010883 vs. NCBI nr
Match: KAG8634527.1 (hypothetical protein MANES_17G048550v8 [Manihot esculenta])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLRY 39
          MA+ELFVLGCTGVV+FLHGANFFFHA      VRSL +
Sbjct: 1  MAVELFVLGCTGVVMFLHGANFFFHALSQHLAVRSLSF 38

BLAST of MS010883 vs. NCBI nr
Match: PON37879.1 (hypothetical protein PanWU01x14_317000 [Parasponia andersonii])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3  LELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          +ELF+LGCTG+VVFLHGANFFFHA     T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

BLAST of MS010883 vs. NCBI nr
Match: PON61367.1 (hypothetical protein TorRG33x02_281910 [Trema orientale])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3  LELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          +ELF+LGCTG+VVFLHGANFFFHA     T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

BLAST of MS010883 vs. NCBI nr
Match: TYI04626.1 (hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          M +ELFVLGCTGVVVFLHGANFFFH       VRSLR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

BLAST of MS010883 vs. ExPASy TrEMBL
Match: A0A2P5AMV0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3  LELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          +ELF+LGCTG+VVFLHGANFFFHA     T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

BLAST of MS010883 vs. ExPASy TrEMBL
Match: A0A5D2NLM3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-06
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          M +ELFVLGCTGVVVFLHGANFFFH       VRSLR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

BLAST of MS010883 vs. ExPASy TrEMBL
Match: A0A2P5CJZ9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3  LELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLR 38
          +ELF+LGCTG+VVFLHGANFFFHA     T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

BLAST of MS010883 vs. ExPASy TrEMBL
Match: A0A5D2AZA5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLRY 39
          M +ELFVLGCTGVVVFLHGANFFFH       VRSL +
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLSF 38

BLAST of MS010883 vs. ExPASy TrEMBL
Match: A0A5J5TXY1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 1  MALELFVLGCTGVVVFLHGANFFFHAFWHRFTVRSLRY 39
          M +ELFVLGCTGVVVFLHGANFFFH       VRSL +
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLSF 38

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034606.16.1e-0984.21hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG8634527.11.4e-0573.68hypothetical protein MANES_17G048550v8 [Manihot esculenta][more]
PON37879.11.8e-0574.29hypothetical protein PanWU01x14_317000 [Parasponia andersonii][more]
PON61367.11.8e-0574.29hypothetical protein TorRG33x02_281910 [Trema orientale][more]
TYI04626.11.8e-0575.68hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5AMV08.9e-0674.29Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE... [more]
A0A5D2NLM38.9e-0675.68Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 P... [more]
A0A2P5CJZ98.9e-0674.29Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV... [more]
A0A5D2AZA52.6e-0571.05Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=... [more]
A0A5J5TXY12.6e-0571.05Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010883.1MS010883.1mRNA