Homology
BLAST of MS010864 vs. NCBI nr
Match:
KGN49226.1 (hypothetical protein Csa_003120 [Cucumis sativus])
HSP 1 Score: 2425.6 bits (6285), Expect = 0.0e+00
Identity = 1204/1224 (98.37%), Postives = 1214/1224 (99.18%), Query Frame = 0
Query: 24 GTGRSFELAQGSLPKNSTPLGTL-EMDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWA 83
G RSFELA+GS P+N T TL +M++YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWA
Sbjct: 25 GRVRSFELARGSFPRNHTSSVTLTKMEDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWA 84
Query: 84 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI 143
VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI
Sbjct: 85 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI 144
Query: 144 SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ 203
SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ
Sbjct: 145 SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ 204
Query: 204 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 263
DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST
Sbjct: 205 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 264
Query: 264 NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 323
NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI
Sbjct: 265 NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 324
Query: 324 RTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK 383
R EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK
Sbjct: 325 RNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK 384
Query: 384 RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED 443
RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED
Sbjct: 385 RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED 444
Query: 444 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG 503
DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG
Sbjct: 445 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG 504
Query: 504 LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 563
LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS
Sbjct: 505 LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 564
Query: 564 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 623
QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA
Sbjct: 565 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 624
Query: 624 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 683
TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL
Sbjct: 625 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 684
Query: 684 FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ 743
FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ
Sbjct: 685 FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ 744
Query: 744 ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 803
ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
Sbjct: 745 ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 804
Query: 804 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 863
QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
Sbjct: 805 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 864
Query: 864 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 923
IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV
Sbjct: 865 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 924
Query: 924 SGEDVIIGKTTPLSQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR 983
SGEDVIIGKTTP+SQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR
Sbjct: 925 SGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR 984
Query: 984 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 1043
VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI
Sbjct: 985 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 1044
Query: 1044 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 1103
ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL
Sbjct: 1045 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 1104
Query: 1104 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1163
GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL
Sbjct: 1105 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1164
Query: 1164 KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM 1223
KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM
Sbjct: 1165 KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM 1224
Query: 1224 AMAIAPRMFTKEIKPLKDQKKKGS 1247
AMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1225 AMAIAPRMFTKEIKPLKDQKKKGS 1248
BLAST of MS010864 vs. NCBI nr
Match:
XP_022142367.1 (DNA-directed RNA polymerase II subunit RPB2 [Momordica charantia])
HSP 1 Score: 2418.3 bits (6266), Expect = 0.0e+00
Identity = 1199/1199 (100.00%), Postives = 1199/1199 (100.00%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. NCBI nr
Match:
XP_008439859.1 (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis melo] >KAA0052688.1 DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis melo var. makuwa] >TYK13136.1 DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 2407.1 bits (6237), Expect = 0.0e+00
Identity = 1191/1199 (99.33%), Postives = 1197/1199 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MD+YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. NCBI nr
Match:
XP_004134705.1 (DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativus])
HSP 1 Score: 2405.6 bits (6233), Expect = 0.0e+00
Identity = 1190/1199 (99.25%), Postives = 1197/1199 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
M++YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MEDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. NCBI nr
Match:
XP_022925785.1 (DNA-directed RNA polymerase II subunit RPB2 [Cucurbita moschata] >XP_022978631.1 DNA-directed RNA polymerase II subunit RPB2 [Cucurbita maxima] >XP_023543828.1 DNA-directed RNA polymerase II subunit RPB2 [Cucurbita pepo subsp. pepo] >KAG7034592.1 DNA-directed RNA polymerase II subunit RPB2 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 2404.8 bits (6231), Expect = 0.0e+00
Identity = 1190/1200 (99.17%), Postives = 1198/1200 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMN-EDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 107
MDEYEEYDRNMN +DDDIDQ+M DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
Sbjct: 1 MDEYEEYDRNMNDDDDDIDQTMHDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 60
Query: 108 NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP 167
NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 61 NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP 120
Query: 168 KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 227
KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
Sbjct: 121 KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 180
Query: 228 SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA 287
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA
Sbjct: 181 SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA 240
Query: 288 ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 347
ESQNRPPSTMFVRMLS+TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
Sbjct: 241 ESQNRPPSTMFVRMLSQTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 300
Query: 348 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM 407
ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM
Sbjct: 301 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM 360
Query: 408 LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 467
LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
Sbjct: 361 LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 420
Query: 468 FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 527
FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
Sbjct: 421 FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 480
Query: 528 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 587
VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
Sbjct: 481 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 540
Query: 588 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 647
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR
Sbjct: 541 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 600
Query: 648 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP 707
RLRRRVDVNTEVGVVRD+RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP
Sbjct: 601 RLRRRVDVNTEVGVVRDVRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP 660
Query: 708 EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLIL 767
EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQAR+NPVEAYSDTYTHCEIHPSLIL
Sbjct: 661 EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARVNPVEAYSDTYTHCEIHPSLIL 720
Query: 768 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 827
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
Sbjct: 721 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 780
Query: 828 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 887
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
Sbjct: 781 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 840
Query: 888 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAAR 947
VKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAAR
Sbjct: 841 VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAAR 900
Query: 948 YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 1007
YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
Sbjct: 901 YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 960
Query: 1008 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1067
MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 961 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1020
Query: 1068 VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1127
VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
Sbjct: 1021 VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1080
Query: 1128 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI 1187
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI
Sbjct: 1081 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI 1140
Query: 1188 ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKE+KPLKDQKKKGS
Sbjct: 1141 ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEVKPLKDQKKKGS 1200
BLAST of MS010864 vs. ExPASy Swiss-Prot
Match:
Q42877 (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=RPB2 PE=2 SV=1)
HSP 1 Score: 2307.3 bits (5978), Expect = 0.0e+00
Identity = 1137/1199 (94.83%), Postives = 1173/1199 (97.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MD +EY+ N D DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDMEDEYEPQYNVD--------DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSD AETIYKI+FGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDV+KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA+
Sbjct: 181 EKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAD 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
Sbjct: 241 TQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDF+DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEML
Sbjct: 301 CYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGE+CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDI LQQRESP+
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPD 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
+GGWHDLVAKG+IEYIDTEEEETTMISMTI+DL+QAR+NP +AYSDTYTHCEIHPSLILG
Sbjct: 661 EGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ++AQGQA+RY
Sbjct: 841 KEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
+R+DHS SLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 TRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKK+SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM TK++K KDQKKKG+
Sbjct: 1141 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191
BLAST of MS010864 vs. ExPASy Swiss-Prot
Match:
P38420 (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB2 PE=1 SV=2)
HSP 1 Score: 2260.7 bits (5857), Expect = 0.0e+00
Identity = 1111/1193 (93.13%), Postives = 1154/1193 (96.73%), Query Frame = 0
Query: 50 EYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 109
EY EY+ +D DD+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM
Sbjct: 2 EYNEYEPEPQYVED------DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 61
Query: 110 QEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 169
QEIVDESADIEIRPESQHNPGHQSD AETIYKISFGQIYLSKPMMTESDGETATLFPKAA
Sbjct: 62 QEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 121
Query: 170 RLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 229
RLRNLTYSAPLYVDV+KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEK
Sbjct: 122 RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEK 181
Query: 230 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQ 289
DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V EVRSMAE+Q
Sbjct: 182 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQ 241
Query: 290 NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 349
NRPPSTMFVRML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICY
Sbjct: 242 NRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICY 301
Query: 350 DFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPH 409
DF+DTQMMELLRPSLEEAFVIQNQ VALDYIGKRG+TVGVTKEKRIKYA++ILQKEMLPH
Sbjct: 302 DFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPH 361
Query: 410 VGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 469
VG+GE CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRK
Sbjct: 362 VGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 421
Query: 470 LTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 529
LTRDVR YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN
Sbjct: 422 LTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 481
Query: 530 RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 589
RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY
Sbjct: 482 RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 541
Query: 590 ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 649
ITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLR
Sbjct: 542 ITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLR 601
Query: 650 RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDG 709
RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKK+DI+ALQQRES E+
Sbjct: 602 RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEED 661
Query: 710 GWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVC 769
GWH LVAKGFIEYIDTEEEETTMISMTISDL+QAR+ P EAY++ YTHCEIHPSLILGVC
Sbjct: 662 GWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVC 721
Query: 770 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 829
ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL
Sbjct: 722 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 781
Query: 830 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 889
HFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE
Sbjct: 782 HFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 841
Query: 890 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSR 949
DFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+EAQGQ++RY+R
Sbjct: 842 DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTR 901
Query: 950 RDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 1009
RDHSISLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY
Sbjct: 902 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 961
Query: 1010 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1069
TQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN
Sbjct: 962 TQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1021
Query: 1070 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1129
ISKALHKCGYQMRGFE MYNGHTGR L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL
Sbjct: 1022 ISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1081
Query: 1130 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANL 1189
TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIAIANL
Sbjct: 1082 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANL 1141
Query: 1190 KKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQK 1243
KK+SFECRGCKNKTDIVQVYIPYACKLLFQELM+MAIAPRM TK +K K ++
Sbjct: 1142 KKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188
BLAST of MS010864 vs. ExPASy Swiss-Prot
Match:
Q54J75 (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum OX=44689 GN=polr2b PE=3 SV=1)
HSP 1 Score: 1658.7 bits (4294), Expect = 0.0e+00
Identity = 813/1175 (69.19%), Postives = 976/1175 (83.06%), Query Frame = 0
Query: 65 DQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 124
D S + +I+QED W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI+DES I +RPE
Sbjct: 8 DDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPE 67
Query: 125 SQHNPGHQSDVAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 184
SQH+PG Q+ V+ + + + FGQIYLSKP E DG + + P AR+RNLTYSAPL+V
Sbjct: 68 SQHHPG-QAVVSNNVSTFSVKFGQIYLSKP-TAEIDGVSQQVTPNQARIRNLTYSAPLFV 127
Query: 185 DVSKRVIKKGHD-GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 244
D++K V+ G+E + ++FIGKVPIMLRS YC L + ++DLT +GEC +DQ
Sbjct: 128 DITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQ 187
Query: 245 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRML 304
GGYFIINGSEKVLIAQEKM+ NHVYVFKK P+KY++VAE+RS E+ +RP STM+++ML
Sbjct: 188 GGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKML 247
Query: 305 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR 364
T+ G G I+AT+PYI+ ++P+IIVFRALGFVADKDILEHICYDF D QMM+L+R
Sbjct: 248 HNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMR 307
Query: 365 PSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKA 424
PSLEE+FVIQ+Q+VALDY+GKRGST+G T+E+RIK+A+E+LQKEMLPHV V EF ETKKA
Sbjct: 308 PSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKA 367
Query: 425 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKC 484
+YFGYI HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR Y+Q+C
Sbjct: 368 FYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRC 427
Query: 485 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 544
+D K+ A+K+KTITSGLKYSLATGNWG + + GT++GV+QVLNRLT+ASTLSHLR
Sbjct: 428 IDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLR 487
Query: 545 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 604
RLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI+VGSA+ PILE
Sbjct: 488 RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE 547
Query: 605 FLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 664
FLEEW TEN EEIS + I ATKIFVNG WVGIH P+ L+ TLR LRR DV+ EV V
Sbjct: 548 FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV 607
Query: 665 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFI 724
VRDIR KELR+YTD GRC RPLF+V+ ++ IKK+ I+ L + + W DL+++G +
Sbjct: 608 VRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYK---WQDLLSEGIV 667
Query: 725 EYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 784
EYID EEEET +I+MT DL+ P E TYTHCEIHPS+ILG+C SIIPFPDHNQ
Sbjct: 668 EYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQ 727
Query: 785 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 844
SPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG N
Sbjct: 728 SPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNV 787
Query: 845 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 904
VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK +L++E F +P+R
Sbjct: 788 CVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCA 847
Query: 905 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPL--SQEEAQGQAARYSRRDHSISLRH 964
GMRHGSY+K+DDDGL PG RV+G+D+IIGKTTPL S ++ + R+++RD S +LR
Sbjct: 848 GMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRS 907
Query: 965 SENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 1024
SE GIVDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQKGT GM Y QED+P+TV
Sbjct: 908 SETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTV 967
Query: 1025 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1084
EGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A G EGDATPFTDVTV+ IS+ALHK G
Sbjct: 968 EGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIG 1027
Query: 1085 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1144
YQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 1028 YQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRS 1087
Query: 1145 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRG 1204
RDGGLRFGEMERDCMI+HGAA FLKERLFDQSD+YR+H+C+ CGLIAIANLKK+SFECR
Sbjct: 1088 RDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRR 1147
Query: 1205 CKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTK 1234
CKNKT I Q+ +PYA KLLFQELM+M+IAPRMFT+
Sbjct: 1148 CKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
BLAST of MS010864 vs. ExPASy Swiss-Prot
Match:
P30876 (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1)
HSP 1 Score: 1577.4 bits (4083), Expect = 0.0e+00
Identity = 792/1183 (66.95%), Postives = 943/1183 (79.71%), Query Frame = 0
Query: 61 DDDIDQSMQDDEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 120
D D D +D++EIT QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++
Sbjct: 3 DADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62
Query: 121 ADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 180
I+++ E+QH G + Y + F QIYLSKP E DG + + P ARLRNLTY
Sbjct: 63 PPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY 122
Query: 181 SAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 240
SAPLYVD++K VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL E
Sbjct: 123 SAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNE 182
Query: 241 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTM 300
CP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYA+ E RS E+ +RP ST+
Sbjct: 183 CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTI 242
Query: 301 FVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT 360
+V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 243 WVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDP 302
Query: 361 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGE 420
+MME+++PSL+EAFVIQ Q VAL++IG RG+ GVTKEKRIKYAKE+LQKEMLPHVGV +
Sbjct: 303 EMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSD 362
Query: 421 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 480
FCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++V
Sbjct: 363 FCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEV 422
Query: 481 RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 540
R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+
Sbjct: 423 RIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 482
Query: 541 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 600
ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VG
Sbjct: 483 ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 542
Query: 601 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 660
S PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D
Sbjct: 543 SQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMD 602
Query: 661 -VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWH 720
+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KK+ I L++RE + W
Sbjct: 603 IIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQ 662
Query: 721 DLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASI 780
DLVA G +EYIDT EEET M++MT DL + + AY TYTHCEIHPS+ILGVCASI
Sbjct: 663 DLVASGVVEYIDTLEEETVMLAMTPDDLQEKEV----AYCSTYTHCEIHPSMILGVCASI 722
Query: 781 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 840
IPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR
Sbjct: 723 IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR 782
Query: 841 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 900
+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F
Sbjct: 783 ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFE 842
Query: 901 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PLSQEEAQGQAARYSRR 960
+P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P +++E + RY++R
Sbjct: 843 KPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKR 902
Query: 961 DHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 1020
D S LR SE GIVDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 903 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 962
Query: 1021 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDN 1080
QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V
Sbjct: 963 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQK 1022
Query: 1081 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1140
IS L GY +RG E +YNG TGR++++ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL
Sbjct: 1023 ISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1082
Query: 1141 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANL 1200
RQP EGRSRDGGLRFGEMERDC IAHGAA FL+ERLF+ SD Y++HVC CG++AIAN
Sbjct: 1083 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1142
Query: 1201 KKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFT 1233
+ ++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM +
Sbjct: 1143 RTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
BLAST of MS010864 vs. ExPASy Swiss-Prot
Match:
Q8CFI7 (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2)
HSP 1 Score: 1575.8 bits (4079), Expect = 0.0e+00
Identity = 791/1183 (66.86%), Postives = 943/1183 (79.71%), Query Frame = 0
Query: 61 DDDIDQSMQDDEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 120
D D D +D++EIT QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++
Sbjct: 3 DADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62
Query: 121 ADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 180
I+++ E+QH G + Y + F QIYLSKP E DG + + P ARLRNLTY
Sbjct: 63 PPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY 122
Query: 181 SAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 240
SAPLYVD++K VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL E
Sbjct: 123 SAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNE 182
Query: 241 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTM 300
CP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYA+ E RS E+ +RP ST+
Sbjct: 183 CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTI 242
Query: 301 FVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT 360
+V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 243 WVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDP 302
Query: 361 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGE 420
+MME+++PSL+EAFVIQ Q VAL++IG RG+ GVTKEKRIKYAKE+LQKEMLPHVGV +
Sbjct: 303 EMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSD 362
Query: 421 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 480
FCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++V
Sbjct: 363 FCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEV 422
Query: 481 RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 540
R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+
Sbjct: 423 RIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 482
Query: 541 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 600
ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VG
Sbjct: 483 ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 542
Query: 601 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 660
S PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D
Sbjct: 543 SQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMD 602
Query: 661 -VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWH 720
+ +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KK+ I L++RE + W
Sbjct: 603 IIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQ 662
Query: 721 DLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASI 780
DLVA G +EYIDT EEET M++MT DL + + AY TYTHCEIHPS+ILGVCASI
Sbjct: 663 DLVASGVVEYIDTLEEETVMLAMTPDDLQEKEV----AYCSTYTHCEIHPSMILGVCASI 722
Query: 781 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 840
IPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR
Sbjct: 723 IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR 782
Query: 841 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 900
+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F
Sbjct: 783 ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFE 842
Query: 901 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PLSQEEAQGQAARYSRR 960
+P R GMRH Y+KLDDDGL PG RVSG+DVIIGKT P +++E + RY++R
Sbjct: 843 KPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKR 902
Query: 961 DHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 1020
D S LR SE GIVDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 903 DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 962
Query: 1021 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDN 1080
QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V
Sbjct: 963 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQK 1022
Query: 1081 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1140
IS L GY +RG E +YNG TGR++++ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL
Sbjct: 1023 ISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1082
Query: 1141 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANL 1200
RQP EGRSRDGGLRFGEMERDC IAHGAA FL+ERLF+ SD Y++HVC CG++AIAN
Sbjct: 1083 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANT 1142
Query: 1201 KKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFT 1233
+ ++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM +
Sbjct: 1143 RTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
BLAST of MS010864 vs. ExPASy TrEMBL
Match:
A0A0A0KNB9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G517340 PE=3 SV=1)
HSP 1 Score: 2425.6 bits (6285), Expect = 0.0e+00
Identity = 1204/1224 (98.37%), Postives = 1214/1224 (99.18%), Query Frame = 0
Query: 24 GTGRSFELAQGSLPKNSTPLGTL-EMDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWA 83
G RSFELA+GS P+N T TL +M++YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWA
Sbjct: 25 GRVRSFELARGSFPRNHTSSVTLTKMEDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWA 84
Query: 84 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI 143
VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI
Sbjct: 85 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKI 144
Query: 144 SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ 203
SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ
Sbjct: 145 SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQ 204
Query: 204 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 263
DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST
Sbjct: 205 DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 264
Query: 264 NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 323
NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI
Sbjct: 265 NHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 324
Query: 324 RTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK 383
R EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK
Sbjct: 325 RNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGK 384
Query: 384 RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED 443
RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED
Sbjct: 385 RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAED 444
Query: 444 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG 503
DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG
Sbjct: 445 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSG 504
Query: 504 LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 563
LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS
Sbjct: 505 LKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 564
Query: 564 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 623
QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA
Sbjct: 565 QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 624
Query: 624 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 683
TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL
Sbjct: 625 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 684
Query: 684 FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ 743
FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ
Sbjct: 685 FIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ 744
Query: 744 ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 803
ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
Sbjct: 745 ARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 804
Query: 804 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 863
QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
Sbjct: 805 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 864
Query: 864 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 923
IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV
Sbjct: 865 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 924
Query: 924 SGEDVIIGKTTPLSQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR 983
SGEDVIIGKTTP+SQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR
Sbjct: 925 SGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVR 984
Query: 984 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 1043
VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI
Sbjct: 985 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 1044
Query: 1044 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 1103
ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL
Sbjct: 1045 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 1104
Query: 1104 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1163
GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL
Sbjct: 1105 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1164
Query: 1164 KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM 1223
KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM
Sbjct: 1165 KERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELM 1224
Query: 1224 AMAIAPRMFTKEIKPLKDQKKKGS 1247
AMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1225 AMAIAPRMFTKEIKPLKDQKKKGS 1248
BLAST of MS010864 vs. ExPASy TrEMBL
Match:
A0A6J1CMJ7 (DNA-directed RNA polymerase subunit beta OS=Momordica charantia OX=3673 GN=LOC111012507 PE=3 SV=1)
HSP 1 Score: 2418.3 bits (6266), Expect = 0.0e+00
Identity = 1199/1199 (100.00%), Postives = 1199/1199 (100.00%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. ExPASy TrEMBL
Match:
A0A5A7UBV7 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007460 PE=3 SV=1)
HSP 1 Score: 2407.1 bits (6237), Expect = 0.0e+00
Identity = 1191/1199 (99.33%), Postives = 1197/1199 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MD+YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. ExPASy TrEMBL
Match:
A0A1S3B0D2 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103484522 PE=3 SV=1)
HSP 1 Score: 2407.1 bits (6237), Expect = 0.0e+00
Identity = 1191/1199 (99.33%), Postives = 1197/1199 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 107
MD+YEEYDRNMN+DDD+DQ++ DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
Sbjct: 1 MDDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 60
Query: 108 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 167
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
Sbjct: 61 TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK 120
Query: 168 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 227
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 121 AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 180
Query: 228 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 287
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
Sbjct: 181 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE 240
Query: 288 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 347
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHI
Sbjct: 241 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI 300
Query: 348 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 407
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
Sbjct: 301 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML 360
Query: 408 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 467
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 361 PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420
Query: 468 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 527
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 421 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 480
Query: 528 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 587
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
Sbjct: 481 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 540
Query: 588 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 647
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
Sbjct: 541 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 600
Query: 648 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 707
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
Sbjct: 601 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE 660
Query: 708 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 767
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
Sbjct: 661 DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG 720
Query: 768 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 827
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
Sbjct: 721 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 780
Query: 828 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 887
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 781 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 840
Query: 888 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARY 947
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAARY
Sbjct: 841 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY 900
Query: 948 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 1007
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 901 SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 960
Query: 1008 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1067
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
Sbjct: 961 TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1020
Query: 1068 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1127
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
Sbjct: 1021 DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1080
Query: 1128 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1187
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
Sbjct: 1081 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA 1140
Query: 1188 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
Sbjct: 1141 NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
BLAST of MS010864 vs. ExPASy TrEMBL
Match:
A0A6J1INB9 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111478551 PE=3 SV=1)
HSP 1 Score: 2404.8 bits (6231), Expect = 0.0e+00
Identity = 1190/1200 (99.17%), Postives = 1198/1200 (99.83%), Query Frame = 0
Query: 48 MDEYEEYDRNMN-EDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 107
MDEYEEYDRNMN +DDDIDQ+M DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
Sbjct: 1 MDEYEEYDRNMNDDDDDIDQTMHDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 60
Query: 108 NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP 167
NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 61 NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP 120
Query: 168 KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 227
KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
Sbjct: 121 KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 180
Query: 228 SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA 287
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA
Sbjct: 181 SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA 240
Query: 288 ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 347
ESQNRPPSTMFVRMLS+TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
Sbjct: 241 ESQNRPPSTMFVRMLSQTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 300
Query: 348 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM 407
ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM
Sbjct: 301 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM 360
Query: 408 LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 467
LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
Sbjct: 361 LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 420
Query: 468 FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 527
FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
Sbjct: 421 FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 480
Query: 528 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 587
VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
Sbjct: 481 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 540
Query: 588 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 647
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR
Sbjct: 541 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 600
Query: 648 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP 707
RLRRRVDVNTEVGVVRD+RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP
Sbjct: 601 RLRRRVDVNTEVGVVRDVRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP 660
Query: 708 EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLIL 767
EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQAR+NPVEAYSDTYTHCEIHPSLIL
Sbjct: 661 EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARVNPVEAYSDTYTHCEIHPSLIL 720
Query: 768 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 827
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
Sbjct: 721 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 780
Query: 828 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 887
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
Sbjct: 781 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 840
Query: 888 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAAR 947
VKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQEEAQGQAAR
Sbjct: 841 VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAAR 900
Query: 948 YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 1007
YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
Sbjct: 901 YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 960
Query: 1008 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1067
MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 961 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1020
Query: 1068 VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1127
VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
Sbjct: 1021 VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1080
Query: 1128 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI 1187
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI
Sbjct: 1081 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI 1140
Query: 1188 ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1247
ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKE+KPLKDQKKKGS
Sbjct: 1141 ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEVKPLKDQKKKGS 1200
BLAST of MS010864 vs. TAIR 10
Match:
AT4G21710.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 2260.7 bits (5857), Expect = 0.0e+00
Identity = 1111/1193 (93.13%), Postives = 1154/1193 (96.73%), Query Frame = 0
Query: 50 EYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 109
EY EY+ +D DD+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM
Sbjct: 2 EYNEYEPEPQYVED------DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 61
Query: 110 QEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 169
QEIVDESADIEIRPESQHNPGHQSD AETIYKISFGQIYLSKPMMTESDGETATLFPKAA
Sbjct: 62 QEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 121
Query: 170 RLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 229
RLRNLTYSAPLYVDV+KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEK
Sbjct: 122 RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEK 181
Query: 230 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQ 289
DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V EVRSMAE+Q
Sbjct: 182 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQ 241
Query: 290 NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 349
NRPPSTMFVRML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICY
Sbjct: 242 NRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICY 301
Query: 350 DFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPH 409
DF+DTQMMELLRPSLEEAFVIQNQ VALDYIGKRG+TVGVTKEKRIKYA++ILQKEMLPH
Sbjct: 302 DFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPH 361
Query: 410 VGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 469
VG+GE CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRK
Sbjct: 362 VGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 421
Query: 470 LTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 529
LTRDVR YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN
Sbjct: 422 LTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 481
Query: 530 RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 589
RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY
Sbjct: 482 RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 541
Query: 590 ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 649
ITVGSAAYPILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLR
Sbjct: 542 ITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLR 601
Query: 650 RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDG 709
RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKK+DI+ALQQRES E+
Sbjct: 602 RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEED 661
Query: 710 GWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVC 769
GWH LVAKGFIEYIDTEEEETTMISMTISDL+QAR+ P EAY++ YTHCEIHPSLILGVC
Sbjct: 662 GWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVC 721
Query: 770 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 829
ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL
Sbjct: 722 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 781
Query: 830 HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 889
HFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE
Sbjct: 782 HFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 841
Query: 890 DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSR 949
DFGRPDR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+EAQGQ++RY+R
Sbjct: 842 DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTR 901
Query: 950 RDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 1009
RDHSISLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY
Sbjct: 902 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 961
Query: 1010 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1069
TQEDMPWT+EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN
Sbjct: 962 TQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1021
Query: 1070 ISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1129
ISKALHKCGYQMRGFE MYNGHTGR L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL
Sbjct: 1022 ISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1081
Query: 1130 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANL 1189
TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGLIAIANL
Sbjct: 1082 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANL 1141
Query: 1190 KKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQK 1243
KK+SFECRGCKNKTDIVQVYIPYACKLLFQELM+MAIAPRM TK +K K ++
Sbjct: 1142 KKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188
BLAST of MS010864 vs. TAIR 10
Match:
AT5G45140.1 (nuclear RNA polymerase C2 )
HSP 1 Score: 709.5 bits (1830), Expect = 4.7e-204
Identity = 431/1198 (35.98%), Postives = 656/1198 (54.76%), Query Frame = 0
Query: 60 EDDDIDQSMQD---DEEEI-----TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 119
+ +D+D + D D+E++ + D + ++ + + +GLV+Q LDSF+ FI + +
Sbjct: 4 DQEDLDLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHK 63
Query: 120 IVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARL 179
IV ++ I S V +IY + F ++ + +P + + + P RL
Sbjct: 64 IVKANSRI------------TSTVDPSIY-LRFKKVRVGEPSIINVN-TVENINPHMCRL 123
Query: 180 RNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 239
++TY+AP++V++ G G + +D V IG++PIMLRS C L+ E++L
Sbjct: 124 ADMTYAAPIFVNIE---YVHGSHGNKAKSAKD--NVIIGRMPIMLRSCRCVLHGKDEEEL 183
Query: 240 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNR 299
LGECP D GGYFII G+EKVL+ QE++S N + + ++ N A V M +S+
Sbjct: 184 ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKT- 243
Query: 300 PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 359
++M + I L +IPIIIV +A+G +D++I++ +
Sbjct: 244 -----VIQM----------EKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMV---G 303
Query: 360 SDTQMMELLRPSLEEAFV--IQNQQVALDYIGKRGSTVGV-TKEKRIKYAKEILQKEMLP 419
D + L PS+EE + Q+ ALDY+ + + T ++ A IL+ L
Sbjct: 304 RDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALSILRDLFLA 363
Query: 420 HVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 479
HV V + +K +Y G ++ R++ L + A DD+D+ GNKRL+L+G L+ LF LF+
Sbjct: 364 HVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 423
Query: 480 KL----TRDVRGYVQKCVDNGKDVNLQFAIKAK--TITSGLKYSLATGNWGQANAAGTRA 539
+ ++V + K + + Q K +I+ GL+ +L+TGN+ R
Sbjct: 424 TMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRK 483
Query: 540 GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 599
G++QVL RL++ ++ + +++ + K++ PR L SQWGM+CP +TPEG++CGLVK
Sbjct: 484 GMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVK 543
Query: 600 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEM 659
NLALM ++T P++ + G + E +S + P + + +NG +G H P+
Sbjct: 544 NLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQY 603
Query: 660 LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHAL 719
+LRRLRR + V V + + + + +D GR RPL I +K +K+ + L
Sbjct: 604 FANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKEL 663
Query: 720 QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEI 779
Q D D + G IEY+D EE +I++ SD EA TH EI
Sbjct: 664 QDGVRTFD----DFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEI 723
Query: 780 HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 839
P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RMDTL Y+L YPQ+PL
Sbjct: 724 EPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPL 783
Query: 840 VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 899
+TTR +E + + +L AG NA VA+ +SGY+ ED+++MN+SS+DRGF R + +
Sbjct: 784 LTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMS 843
Query: 900 KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEA 959
+K + P R+ G LDDDGLA PG + D+ I K P+
Sbjct: 844 QKYDNCTADRILIPQRT---GPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTK 903
Query: 960 QGQA---ARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 1019
A ++Y E +VD+V L ++ G +K +R R P++GDKFSS
Sbjct: 904 FTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSS 963
Query: 1020 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1079
RHGQKG G+ QED P++ GI PD+I+NPH PSRMT+G++IE + K G+
Sbjct: 964 RHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFH 1023
Query: 1080 DATPFTDVT-----VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKH 1139
+ F + + V+ IS L + G+ G + +Y+G +G + A IF+GP YYQ+LKH
Sbjct: 1024 YGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKH 1083
Query: 1140 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDA 1199
MV DK+H+RG GP ++TRQP EG+S++GGLR GEMERDC+IA+GA+ + ERL SD
Sbjct: 1084 MVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDP 1143
Query: 1200 YRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRM 1231
+ + VC CGL+ N K C CKN +I + +PYACKLLFQEL +M + PR+
Sbjct: 1144 FEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRL 1156
BLAST of MS010864 vs. TAIR 10
Match:
AT3G23780.1 (nuclear RNA polymerase D2A )
HSP 1 Score: 652.1 bits (1681), Expect = 8.8e-187
Identity = 432/1235 (34.98%), Postives = 643/1235 (52.06%), Query Frame = 0
Query: 46 LEMDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFI 105
+++ + EE++ E ++ + E Q +++F++ GL+ QL+S++ FI
Sbjct: 6 IDVKDLEEFEATTGE-----INLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFI 65
Query: 106 QNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLF 165
++ +Q + ++ + P +D K FG++ + KP D E L
Sbjct: 66 EHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVK--FGEVTVEKPTFFSDDKELEFL- 125
Query: 166 PKAARLRNLTYSAPLYVDVSKRVIKK----------GHDGEEVTETQDFTK--VFIGKVP 225
P ARL+N+TYSA + V+V V K G D + D K + IG +P
Sbjct: 126 PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIP 185
Query: 226 IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 285
+M++S C + K+ + G+C +DQGGYF+I G+EKV IAQE+M T +++ P
Sbjct: 186 VMVKSILCKTSEKG-KENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI--SNSP 245
Query: 286 NKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 345
+F +E +NR VR+ A+ + + T+ ++ TEIP+ ++F
Sbjct: 246 WTVSFRSE-----NKRNR----FIVRLSENEKAEDYKRREKV-LTVYFLSTEIPVWLLFF 305
Query: 346 ALGFVADKDILEHICYDFSDTQMMELLRPSLE------EAFVIQNQQVALDYIGKRGSTV 405
ALG +DK+ ++ I +D D + L S+ EAF N AL Y+ ++ +
Sbjct: 306 ALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNN--ALTYVEQQ---I 365
Query: 406 GVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 465
TK + E L + P G KKA + GY++ LL G+R ++RD +
Sbjct: 366 KSTKFPPAESVDECLHLYLFP----GLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSF 425
Query: 466 GNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYS 525
NKR++LAG LL R+ R + +QK + D+ ++ + A IT+GL +
Sbjct: 426 RNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRA 485
Query: 526 LATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 585
+TG W R +GV L R TL LRR + GK+ R H S WG
Sbjct: 486 FSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWG 545
Query: 586 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 645
+C TP+G+ CGLVKN++L+ ++ S ++E L G E + + + K+
Sbjct: 546 RVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFACGMEELMDDTCTPLFGKHKV 605
Query: 646 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 705
+NG WVG+ D E V L+ RR+ ++ E+ + RD E+RI+TD GR RPL +V
Sbjct: 606 LLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVV 665
Query: 706 EKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARI 765
E + L ++E P + L+ G +E I EEEE + I L++
Sbjct: 666 ENLQKL----------KQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKE-- 725
Query: 766 NPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQF 825
YTHCE+ S +LGV +++PF +H+ R YQS +QA+G TN
Sbjct: 726 ------PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNI 785
Query: 826 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 885
R DTL+ L+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++
Sbjct: 786 RCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLE 845
Query: 886 RGFFRSLFFRSYR--------DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 945
RG FRS RSY+ ++ KKM LV+ FG+ + G D L+DDG
Sbjct: 846 RGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ--FGKTH------SKIGKVDSLEDDGFP 905
Query: 946 PPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGL 1005
G +S D++IG+ T S DHSI L+H+E GIV +V+L++N +G
Sbjct: 906 FIGANMSTGDIVIGRCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGK 965
Query: 1006 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 1065
F V +R VR P +GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR
Sbjct: 966 NFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQ 1025
Query: 1066 TIGQLIECIMGK-VAAHMGKEGD----------ATPFTDVTVDNISKALHKCGYQMRGFE 1125
T GQL+E + K +A + KEG ATPF+ V I++ LH+ G+ G E
Sbjct: 1026 TPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNE 1085
Query: 1126 TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1185
+YNG +G + +MIF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++F
Sbjct: 1086 RVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1145
Query: 1186 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIA-------IANLKKSSFECRG 1234
GEMERDC+IAHGA+ L ERLF SD+ ++H+C C A + K CR
Sbjct: 1146 GEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRV 1170
BLAST of MS010864 vs. TAIR 10
Match:
AT3G23780.2 (nuclear RNA polymerase D2A )
HSP 1 Score: 652.1 bits (1681), Expect = 8.8e-187
Identity = 432/1235 (34.98%), Postives = 643/1235 (52.06%), Query Frame = 0
Query: 46 LEMDEYEEYDRNMNEDDDIDQSMQDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFI 105
+++ + EE++ E ++ + E Q +++F++ GL+ QL+S++ FI
Sbjct: 6 IDVKDLEEFEATTGE-----INLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFI 65
Query: 106 QNTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLF 165
++ +Q + ++ + P +D K FG++ + KP D E L
Sbjct: 66 EHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVK--FGEVTVEKPTFFSDDKELEFL- 125
Query: 166 PKAARLRNLTYSAPLYVDVSKRVIKK----------GHDGEEVTETQDFTK--VFIGKVP 225
P ARL+N+TYSA + V+V V K G D + D K + IG +P
Sbjct: 126 PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIP 185
Query: 226 IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 285
+M++S C + K+ + G+C +DQGGYF+I G+EKV IAQE+M T +++ P
Sbjct: 186 VMVKSILCKTSEKG-KENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI--SNSP 245
Query: 286 NKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 345
+F +E +NR VR+ A+ + + T+ ++ TEIP+ ++F
Sbjct: 246 WTVSFRSE-----NKRNR----FIVRLSENEKAEDYKRREKV-LTVYFLSTEIPVWLLFF 305
Query: 346 ALGFVADKDILEHICYDFSDTQMMELLRPSLE------EAFVIQNQQVALDYIGKRGSTV 405
ALG +DK+ ++ I +D D + L S+ EAF N AL Y+ ++ +
Sbjct: 306 ALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNN--ALTYVEQQ---I 365
Query: 406 GVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 465
TK + E L + P G KKA + GY++ LL G+R ++RD +
Sbjct: 366 KSTKFPPAESVDECLHLYLFP----GLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSF 425
Query: 466 GNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYS 525
NKR++LAG LL R+ R + +QK + D+ ++ + A IT+GL +
Sbjct: 426 RNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRA 485
Query: 526 LATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 585
+TG W R +GV L R TL LRR + GK+ R H S WG
Sbjct: 486 FSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWG 545
Query: 586 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 645
+C TP+G+ CGLVKN++L+ ++ S ++E L G E + + + K+
Sbjct: 546 RVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFACGMEELMDDTCTPLFGKHKV 605
Query: 646 FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 705
+NG WVG+ D E V L+ RR+ ++ E+ + RD E+RI+TD GR RPL +V
Sbjct: 606 LLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVV 665
Query: 706 EKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARI 765
E + L ++E P + L+ G +E I EEEE + I L++
Sbjct: 666 ENLQKL----------KQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKE-- 725
Query: 766 NPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQF 825
YTHCE+ S +LGV +++PF +H+ R YQS +QA+G TN
Sbjct: 726 ------PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNI 785
Query: 826 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 885
R DTL+ L+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++
Sbjct: 786 RCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLE 845
Query: 886 RGFFRSLFFRSYR--------DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 945
RG FRS RSY+ ++ KKM LV+ FG+ + G D L+DDG
Sbjct: 846 RGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ--FGKTH------SKIGKVDSLEDDGFP 905
Query: 946 PPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGL 1005
G +S D++IG+ T S DHSI L+H+E GIV +V+L++N +G
Sbjct: 906 FIGANMSTGDIVIGRCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGK 965
Query: 1006 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 1065
F V +R VR P +GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR
Sbjct: 966 NFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQ 1025
Query: 1066 TIGQLIECIMGK-VAAHMGKEGD----------ATPFTDVTVDNISKALHKCGYQMRGFE 1125
T GQL+E + K +A + KEG ATPF+ V I++ LH+ G+ G E
Sbjct: 1026 TPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNE 1085
Query: 1126 TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1185
+YNG +G + +MIF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++F
Sbjct: 1086 RVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1145
Query: 1186 GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIA-------IANLKKSSFECRG 1234
GEMERDC+IAHGA+ L ERLF SD+ ++H+C C A + K CR
Sbjct: 1146 GEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRV 1170
BLAST of MS010864 vs. TAIR 10
Match:
AT3G18090.1 (nuclear RNA polymerase D2B )
HSP 1 Score: 629.8 bits (1623), Expect = 4.7e-180
Identity = 404/1113 (36.30%), Postives = 590/1113 (53.01%), Query Frame = 0
Query: 168 AARLRNLTYSAPLYVDVSKRVIKK----------GHDGEEVTETQDFTK--VFIGKVPIM 227
A RL+N+TYSA + V+ V KK G D E D K + IG +P+M
Sbjct: 2 ACRLQNMTYSARIKVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVM 61
Query: 228 LRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 287
++S C + K+ + G C +DQGGYF+I G+EKV IAQE+M T +++ P
Sbjct: 62 VKSVLCKTSEKG-KENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI--SNSPWT 121
Query: 288 YAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRAL 347
+F +E + +NR VR+ A+ + + T+ ++ TEIP+ ++F AL
Sbjct: 122 VSFRSETK-----RNR----FIVRLSENEKAEDYKIMEKV-LTVYFLSTEIPVWLLFFAL 181
Query: 348 GFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI----QNQQVALDYIGKRGSTVGVTK 407
G +DK+ ++ I +D D + L S+ EA + + AL Y+ + + TK
Sbjct: 182 GVSSDKEAMDLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQ---IKSTK 241
Query: 408 EKRIKYAKEILQKEMLPHV-GVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 467
+ + L+ + P + G+ KKA + GY++ LL G+R ++RD + NK
Sbjct: 242 FPPAESVDDCLRLYLFPCLQGL-----KKKARFLGYMVKCLLSAYAGKRKCENRDSFRNK 301
Query: 468 RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLAT 527
R++LAG LL R+ R + +QK + D+ ++ + A IT+GL + +T
Sbjct: 302 RIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFST 361
Query: 528 GNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 587
G W R +GV L R TL LRR + GK+ R H S WG +C
Sbjct: 362 GAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVC 421
Query: 588 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 647
TP+G+ CGLVKN++L+ ++ ++E L G E + + K+ +N
Sbjct: 422 FLSTPDGENCGLVKNMSLLGLVST-QGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLN 481
Query: 648 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 707
G WVG+ D E V L+ RR+ ++ E+ + RD E+RI+TD GR RPL +VE
Sbjct: 482 GDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVE-- 541
Query: 708 RLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPV 767
++H L+Q + P + L+ +G +E I EEEE + I L++ N
Sbjct: 542 -------NLHKLKQ-DKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKN-- 601
Query: 768 EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQFRMD 827
YTHCE+ S +LGV +I+PF +H+ R YQS +QA+G TN R D
Sbjct: 602 ------YTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCD 661
Query: 828 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 887
TL+ L+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++RG
Sbjct: 662 TLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGM 721
Query: 888 FRSLFFRSYR--------DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 947
FRS RSY+ ++ KKM LV+ FG+ + G D L+DDG G
Sbjct: 722 FRSEQIRSYKAEVDTKDSEKRKKMDELVQ--FGK------TYSKIGKVDSLEDDGFPFIG 781
Query: 948 TRVSGEDVIIGKTTPLSQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFV 1007
+S D++IG+ T S DHSI L+H+E GIV +V+L++N +G F
Sbjct: 782 ANMSTGDIVIGRCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFA 841
Query: 1008 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1067
V +R VR P +GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR T G
Sbjct: 842 AVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPG 901
Query: 1068 QLIECIM------------GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1127
QL+E + G AA+ ATPF+ V I++ LH+ G+ G E +
Sbjct: 902 QLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERV 961
Query: 1128 YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1187
YNG +G + ++IF+GPT+YQRL HM ++K+ R GPV LTRQP R R GG+RFGE
Sbjct: 962 YNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGE 1021
Query: 1188 MERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIA-------IANLKKSSFECRGCK 1234
MERDC+IAHGA+ L ERLF SD+ ++H+C C A + K CR C
Sbjct: 1022 MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCA 1053
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN49226.1 | 0.0e+00 | 98.37 | hypothetical protein Csa_003120 [Cucumis sativus] | [more] |
XP_022142367.1 | 0.0e+00 | 100.00 | DNA-directed RNA polymerase II subunit RPB2 [Momordica charantia] | [more] |
XP_008439859.1 | 0.0e+00 | 99.33 | PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis melo]... | [more] |
XP_004134705.1 | 0.0e+00 | 99.25 | DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativus] | [more] |
XP_022925785.1 | 0.0e+00 | 99.17 | DNA-directed RNA polymerase II subunit RPB2 [Cucurbita moschata] >XP_022978631.1... | [more] |
Match Name | E-value | Identity | Description | |
Q42877 | 0.0e+00 | 94.83 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=R... | [more] |
P38420 | 0.0e+00 | 93.13 | DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB... | [more] |
Q54J75 | 0.0e+00 | 69.19 | DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum OX=44689... | [more] |
P30876 | 0.0e+00 | 66.95 | DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE... | [more] |
Q8CFI7 | 0.0e+00 | 66.86 | DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b P... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KNB9 | 0.0e+00 | 98.37 | DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G517... | [more] |
A0A6J1CMJ7 | 0.0e+00 | 100.00 | DNA-directed RNA polymerase subunit beta OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A5A7UBV7 | 0.0e+00 | 99.33 | DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A1S3B0D2 | 0.0e+00 | 99.33 | DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103484522... | [more] |
A0A6J1INB9 | 0.0e+00 | 99.17 | DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11147... | [more] |