MS010859 (gene) Bitter gourd (TR) v1

Overview


Name	MS010859
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF1771 domain-containing protein
Location	scaffold35: 2542332 .. 2548746 (+)
RNA-Seq Expression	MS010859
Synteny	MS010859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAAAGGAAGCATATGGAGTGAACGCATCAAAATTCGGCAAGGAGGACGTGGTGCTCAAGTCTTTGCTTGATGCTTTTGGTTCTACATTTTCACTTGATGAAATAGCTTCTGCCTATTTGAAGGCAGACTACAGTGCAGATTTGGCTGCTGAAATCTTGTACCAAACGCAGGGAAGCACCCCTAGCTCCGCATCTAATGGCAAGATAGGAAATGGAGATAATTTGGGTAAAGGTTCTGAGAATTCATACCAGGTCAATGGGAGCCAGAAAACTGCAAAGCCAAAGATTCAGCCTTTCTCAGCAGGCACAGTTTCGAGCGTTATTGGTAAAGAATATGCTAGGTCGAAGTCATCAGCAAATCAGTTTACTCAGGTATATAAACCGGTGCAGGTGGGGGTAAAGGTTTTGCATGAATCTTCGAGTGAAGGAGATTGTACGAATTTCACTAGTGAGTCCCACCTGCATCAAGATATGGAAAATTTCCTCTTCAAAATGCTTGGGGATGGGTTCAGGTTGAAGAGGGAAGTGATTCGAGAAGTTCTTGGTAGGCTGTTTTTTTTTTATCTTTGCTAGTTATCTTCAATGGTGTCTTTCAAATATCAAGTTATGGGAAATTAACCAGATACCTTATGTTTGTCCAGTAGGCCAAGATTTGTTTGTTGTCTGTCTGATTTGCATTACATACTATTAAAATCACAACAGTTTAATTGTGTGTGAAGATTGTTAGAATCATAGGGAATTGTGTTAGAAGTTTGTGGGTCAGAACCTTACAATAATTATCATGATTTATAAGTTACAAATCTGTCTAAAAATAAGATTATTGTTTGGCCTTTTGAAATACAAGTTTTTTTGAGACGTGTTAATTGAATATTTCAGAACTCTCTACCGTAATACTTCTAAACAACTCTTTTATTTGATTGTTTCATCTCAACCTTATGCATTGTTCGGAACTTCAATAGTTAGTATCTTCAATATAAAAGAATTGAACCAACAATAGCCTTGAAATGTCTGTTTTGGTTTGGTATTTCTAAATTCTTTGAGGGTCAAGAAGTGTTTTAGATGAAATTATGTTTTTATTTCATCAAACAGAAATTCCTCCGTGAATTATAGTGCTTTCACAGCGAAGTAATTGTTTAAATATTATGTAAGTCCTACTAGTCTCTTTAACCATTGTACTTAATATCCAAGACTTATTTGTATTGCTGATGGTTTGAGATATGTGCCAGCTTTAAGTATTTGACCCAGCTAGCCCTACAAAGGAAAGTTGTTGAAAGCAACTTGATTTCGAAGATGACAATTAGTTTAGTATTTATAAGCCTAGAAGAGAGTTTAGAATAAATAACAATAATATAAGAATTTCCATCTATTGCAATAGAATTCTGGGTTTGTATATTGTCTTGTTTATAGTTTACTTGTATTAGTATGAAGTATTTTCATGGAAATTGGCTTCTTATTGAAATGCTTATTATTGAATAATATGTGAAAAATCTAACCAGTAACCAGAATTTGTATTGTTTTTGCAGGTAGTTGTGGATATGATATGAAAAAGGTATGCATATTGTCAGTTTTAATGGCTTTTTCAGCCTCTGATGCTTTTCGAGAATTGCAGTTCTGAGTGGAGTCTATCCTCTCTTTATGACCCTCAGCACTCAGCAGTTTCTTTTGATAACTCTTTCTCTCTCTAATTGTATATGTCATGACTTCTTCAAATTTGTGCCGACCTTCATTACTTATTTTGTAAAAATCCAAGAAATTAGTTTTGAAAAATTAAATAACTGTTGCGAAATGCTTCTTACTAACCTGACCATGGGGTTTTGGGGGAAGTTATAGTTATATCTGTGTGGGGCTTATTGGTCATGTAAAAGCGTAGATATCAAATGGCTTTAAAGTGCAGCTAAGGCTGTGAACATCCAGGATGGAATACGAGATCTAAACTTTAGAAAGATTTAAGTTCTTAATTTGTTTATGTTCATTGTTTGATCGATAATGACGTCTGAGATACCTTCTAATAGCGTCATGAGCAGACATGCATCTTGTTTTCACGCTCTATCTATTTCTTATAAAGAGATTTCACCATAATAATTTGCCATTAATTCCTCTAAAGAGTATCCTTTTGAGTTTTCAGAGCATGGAGAATTTGCTTAATCGGTCAACAATTCCAGTGGAGGAAAGACGTGGTTCGGGTAATAAGCCCAATGGCACGGTTAGTTGACTTGAGTACTCATTTTCACATAGAAGGTTGTGTAAAGGCTAAAGGGTCGTTACAATTAATGAAATCATTTTAATTTGTCCGCTGGTTACTGGTTAAAATTATGGTGGAAGTTCCTCTAATAATTTAAAGGCAAAAAATCAATTGAAAAACCCCTAAAGTATGCAGTTGAATTAATTAAAACCTTAAACTAATAATTATATTGATTAAAACTATAAACTTTCACAAGTGAATCAATTTACACCCTCTGCTATGGTTACATTTAAAAATCGTTAATGTATAATTCTCACATATGTGTAGACTTATTTAAATGAAGAATTAATGAAATATTAGAGGGTAATGCTGAATTAAGTGAGTTGCAGAGGCTTTCATCAAAAGAAAGATAGAGGAAGAAGAGAAGATGAAAAACTTACCATATTGATAAAAGATACTACCACCCACTTGTTTTAGCATTTTCCTTTAATATTTCGTTAGTCTTGCATTTGAAGAAGTCTGCACACACTTGTGAGAATTATGTGTGTTAATGGTTTTCAAAGGAAGAACCCTACAACATTCATCTAGAAAAGTTTAAGAGTTTTAATTAATAAAATTATTAGTTTAGGGGTTTAATTGATTCAACCTGCAAAGTTTAAAGGTATAAATGATTTTTTCCCTAGTTTAAAAGTTCAACCTTTGCTTGATTATAGAATGACATTTTTGCTTTGTGAAATATGAGTTCATTTTAATATATATTTTCTTTCTTACTCGAGTTTTTTTTTTTTTTTTTTGCAGACTACAGCTTCGTCTTCAAGTCCTGGAGGGTATGCATGTTTGCTTGGTCTATTCATTCACTCATTGTTCCATATTCAGTCGTGTAGCCTATGTCATTGTTAAAAGTAGAATAACCATTATTCTACGTATCCATTTTAGAACAAATATTATGTTAAGAATTTTCCTGACATGCTAGTAATCTGGATAAGACTTCTTTATGGACAAAGTTAACTTGTTATTCGTTACTTAGTTTGAAATTAATGTTCATTTTTTGTCCATCCAGGAATGGAAATATGGCCTCAAGCAAAAAAGGCTTGGAGTTGACTAACCTGGGGAAGACTAGATTCGATCTTCAAAAGGAGATTCTAACTACTTTATTTAATGCTTCTGAGGAACCAGAAGAGGAGTTACCAAGAAGAAGAACAGTATCAAAGATGAAGCGGTCTGGAGCATTTGGACAGTTGGTGAGTGAACCATTCAAAGACATGGATGCAGAGGATGAAAAGCATGTGGAACATCAGGCGGAGAATAGTTTGGATGGTAACTGCAGAATTATCTTTTTCGACATTTATTTACGGAGCCATAGAAGATTAAAGCATTGGCTGTGGAGTTGGACGAAAAATAGATTCTCAATATTGATTGTTTACTTTCTAAACGCTCAACATTCTATATCTTACAATTCTAATTTTCAAATGATTAAAGTTTCTTTCTCATGGCACAATTGTTTGTATAAGTAAATCACTAAAATTTTAGAAGTATTTCTATTTTTTTAATAGGAATAATCACATTGTCTTTTGGACCACATAACTAATATAATATCAGTAATCGTGTATCACATTTTGAAGAAATCAAAAAGTTTCACGGGGGTGCATCATTTAGCATAATCAAGGGGGTAAATAAAGTAAATTGCTGAATATATCTTTAGGGAGGTAAGAATGCCTCGACCATTATGCTCATGTCGCATTGCTGGTACATATATTATTGAAATGTTCTGGGGCAAGATCTCCTACTGCACAGTTCAAGAAGTATAGAATCGTCCTGTCATGTAGACCTGTTAAAAGATTATTCTAGGAATGTAATTGGTACTAGTTTGAGTTTATTACTGGATTTTTTAATTTGTTATTTTGGCCGTTGAATTATTCTTGATCTGACAAGTGCTCTACAAACTGCAGTTGATGATGAAGAAAATACATACCAACTTCTTCGTAAGGCTGTTAGGGAGTACCGGGGCACAATGAATGAATATTATGCAGCGGTAGGTGGATTTTGTGCCTTGGTTTGACTTTTCCACACACGTGTATAATCTGCCATAAACTGATTTTTTTCAGTGTCATTCGAATCACTTCTAAGATGAGAAAATTAATTTGTTCATAGGCCATAGATGCATTTGCTAAAGGGGATTATGTTCGAGCAGCCAAACTCACAGATGAGGTAATGGTGTAGTGTTTTTCATCTTGTATTTCCATATTTCTTTTATTATTATTTTTTTAAAATAAGAAACAAACTATATTTCATTGAAGAGATGGGATTGTGAAAAGAAAAGTTAGAAAGAAATTACCTCCGCCCCTTGGCCAAAGGATTATAGAAAATCTTTCACATTGGTAGCTGTATAAGAAACTGTGTAATTTCAAAACAAAGAGTGAGAAAATGCCATGAAGAAGCTATGAAAATATTGATGTCCCAAATATCTTCCCTGACGTCATCCTATATCCTGGGAGAATTTGTATTTCTTTCCAACTAAACTTCTCAAAGAAGAGCAAGAGCTCATTTCTCCAAGTAATCTTATCTTGGCGTGCTATTGAGATTTGAGCTACTATTCAACCTGATGATGATCATAGTTATAACATCAAAACAGAAGCACACTTGTAAATTTTTTTGAACAAGAAACAAACTTGTCATGTTTTTTTTGATAAGAAACTGCACTTTCATTGAGATAAATGAATAAAAACTACAAAAAGAGGGCATACAAAAAAACAGCCCAGCAATAGGAAACCCCTAAAGAAACAGGCTCCAATCCAAAAGAATGACTCCTAACTGATAATTACAAAAAGCCTTAGTGACCGATCTCCATAGAGAAGTGTTAAATCTAATAAGATCCCACACATAATCCACAGATCTCTCCACTCCCCTAAAAATTCTATTGTTTCTCTCCTGCCAAATACCCCATAGAGTAGCCAGAAAACACGCTTGCCAAAGAAAACGCCCTTTGTCTCGAAACGGGGGGAATAACAATACTTCTTCCATCATCGCCCTACAATCTCTGGAATGGGCCCAAACAATCCCAAAACGCCCAAACAATCCCAAAACATCTAAAGAAACGAACTTGTCATTGAAATAATGAAAAGTTACAAAAATTGTTCAAAGGAAACAAACTCCAAAAAGGAGCGAAGGAAAAAGCAAAACAGAGAAGGAAAAGGCAAAGCAAAACTCTTAGAAGTTTAAAATCTCAGACGGTTAGTGCCAAAACCTTCCAGTAAGATTGGGCTTGGTTTGATGGAGTTTTCAACCAACAACATTCTGATCCTGTTTACTTATTATATGTGAGAAAATGAAACTACGAGTATGCAGTAATTTCTTTACATGACAAAAGATGAACACGATTTCTTTCAACTGGGGAAATGGGATAGTGGTCAACTATTTTATGTACAAATGTTATCATGACCTCGTATATTGAGGTGTAAACTCATGTTCCTAAAATGCATGATGTAGGGGCACTTTTTTCGTAAAAAGGCTCAAGAAGCAGATGAACAATCGTGCCAGTTAATTTTTGACCCCAGGTTGGTGGTTATGATCTTTACAAGTATGCCTTGTCAAACTACAGCATTTTTTAGATGTCTGTAAATCAATTTCAGGCTCACTTTTTCTGTTTTGTTCGTAAGCAGAAATGCAGATACTGAAGATGATGAAATATTGCTTGATTTGCACAACCTTGGTGGCAGGGAGGCAGTGAGCGTTTTGAAGTCTCAAATTTCTTCGCTATCTCAAATCCCATGTGAGTTCCTCTGTTTTTATTTACTTACTTATTTTCAGTTCGTAATTGCATTTTTTAGGCCCCATTTAATATCTATTTTGTTGTCTACTCCTATCAGTATTTTTCTTTGTTTAGTAATCTACTTTTCAAAAATGTCTTCAATATCTCAGCTAAATATTAAAAGCTAAACAAAAAATAGTTTTTAAAAATTTGTTTCTATTTTTTGAAATTTAGTTAAAAATTCATCTGTGTTCTTTAAGAAAGGTAAAAAATACCTCAAACAAAATTGTGAAAGAAATTAGCCATTCTTATAAATCAAAAACTAAAAACAAAACAATTATCAAATGGGGCTCAGTTATCCATTTTATATATTGATACAACTTATTTTCGTTTTCTTTTCAGCAATCAAACATCTTAAAGTAATAATAGAGGCAAATGATAAAGATACCTCGAAACGGTCTTGTAGACGTTTGGTAAGA

mRNA sequence

ATGACAGGAAAGGAAGCATATGGAGTGAACGCATCAAAATTCGGCAAGGAGGACGTGGTGCTCAAGTCTTTGCTTGATGCTTTTGGTTCTACATTTTCACTTGATGAAATAGCTTCTGCCTATTTGAAGGCAGACTACAGTGCAGATTTGGCTGCTGAAATCTTGTACCAAACGCAGGGAAGCACCCCTAGCTCCGCATCTAATGGCAAGATAGGAAATGGAGATAATTTGGGTAAAGGTTCTGAGAATTCATACCAGGTCAATGGGAGCCAGAAAACTGCAAAGCCAAAGATTCAGCCTTTCTCAGCAGGCACAGTTTCGAGCGTTATTGGTAAAGAATATGCTAGGTCGAAGTCATCAGCAAATCAGTTTACTCAGGTATATAAACCGGTGCAGGTGGGGGTAAAGGTTTTGCATGAATCTTCGAGTGAAGGAGATTGTACGAATTTCACTAGTGAGTCCCACCTGCATCAAGATATGGAAAATTTCCTCTTCAAAATGCTTGGGGATGGGTTCAGGTTGAAGAGGGAAGTGATTCGAGAAGTTCTTGGTAGGCTTATCCTTTTGAGTTTTCAGAGCATGGAGAATTTGCTTAATCGGTCAACAATTCCAGTGGAGGAAAGACGTGGTTCGGGTAATAAGCCCAATGGCACGTTAACTTGTTATTCGTTACTTAGTTTGAAATTAATGTTCATTTTTTGTCCATCCAGGAATGGAAATATGGCCTCAAGCAAAAAAGGCTTGGAGTTGACTAACCTGGGGAAGACTAGATTCGATCTTCAAAAGGAGATTCTAACTACTTTATTTAATGCTTCTGAGGAACCAGAAGAGGAGTTACCAAGAAGAAGAACAGTATCAAAGATGAAGCGGTCTGGAGCATTTGGACAGTTGGTGAGTGAACCATTCAAAGACATGGATGCAGAGGATGAAAAGCATGTGGAACATCAGGCGGAGAATAGTTTGGATGTTGATGATGAAGAAAATACATACCAACTTCTTCGTAAGGCTGTTAGGGAGTACCGGGGCACAATGAATGAATATTATGCAGCGGCCATAGATGCATTTGCTAAAGGGGATTATGTTCGAGCAGCCAAACTCACAGATGAGGGGCACTTTTTTCGTAAAAAGGCTCAAGAAGCAGATGAACAATCGTGCCAGTTAATTTTTGACCCCAGCAGAAATGCAGATACTGAAGATGATGAAATATTGCTTGATTTGCACAACCTTGGTGGCAGGGAGGCAGTGAGCGTTTTGAAGTCTCAAATTTCTTCGCTATCTCAAATCCCATCAATCAAACATCTTAAAGTAATAATAGAGGCAAATGATAAAGATACCTCGAAACGGTCTTGTAGACGTTTGGTAAGA

Coding sequence (CDS)

ATGACAGGAAAGGAAGCATATGGAGTGAACGCATCAAAATTCGGCAAGGAGGACGTGGTGCTCAAGTCTTTGCTTGATGCTTTTGGTTCTACATTTTCACTTGATGAAATAGCTTCTGCCTATTTGAAGGCAGACTACAGTGCAGATTTGGCTGCTGAAATCTTGTACCAAACGCAGGGAAGCACCCCTAGCTCCGCATCTAATGGCAAGATAGGAAATGGAGATAATTTGGGTAAAGGTTCTGAGAATTCATACCAGGTCAATGGGAGCCAGAAAACTGCAAAGCCAAAGATTCAGCCTTTCTCAGCAGGCACAGTTTCGAGCGTTATTGGTAAAGAATATGCTAGGTCGAAGTCATCAGCAAATCAGTTTACTCAGGTATATAAACCGGTGCAGGTGGGGGTAAAGGTTTTGCATGAATCTTCGAGTGAAGGAGATTGTACGAATTTCACTAGTGAGTCCCACCTGCATCAAGATATGGAAAATTTCCTCTTCAAAATGCTTGGGGATGGGTTCAGGTTGAAGAGGGAAGTGATTCGAGAAGTTCTTGGTAGGCTTATCCTTTTGAGTTTTCAGAGCATGGAGAATTTGCTTAATCGGTCAACAATTCCAGTGGAGGAAAGACGTGGTTCGGGTAATAAGCCCAATGGCACGTTAACTTGTTATTCGTTACTTAGTTTGAAATTAATGTTCATTTTTTGTCCATCCAGGAATGGAAATATGGCCTCAAGCAAAAAAGGCTTGGAGTTGACTAACCTGGGGAAGACTAGATTCGATCTTCAAAAGGAGATTCTAACTACTTTATTTAATGCTTCTGAGGAACCAGAAGAGGAGTTACCAAGAAGAAGAACAGTATCAAAGATGAAGCGGTCTGGAGCATTTGGACAGTTGGTGAGTGAACCATTCAAAGACATGGATGCAGAGGATGAAAAGCATGTGGAACATCAGGCGGAGAATAGTTTGGATGTTGATGATGAAGAAAATACATACCAACTTCTTCGTAAGGCTGTTAGGGAGTACCGGGGCACAATGAATGAATATTATGCAGCGGCCATAGATGCATTTGCTAAAGGGGATTATGTTCGAGCAGCCAAACTCACAGATGAGGGGCACTTTTTTCGTAAAAAGGCTCAAGAAGCAGATGAACAATCGTGCCAGTTAATTTTTGACCCCAGCAGAAATGCAGATACTGAAGATGATGAAATATTGCTTGATTTGCACAACCTTGGTGGCAGGGAGGCAGTGAGCGTTTTGAAGTCTCAAATTTCTTCGCTATCTCAAATCCCATCAATCAAACATCTTAAAGTAATAATAGAGGCAAATGATAAAGATACCTCGAAACGGTCTTGTAGACGTTTGGTAAGA

Protein sequence

MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQGSTPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSSANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIREVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGNMASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSEPFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDYVRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLVR

Homology

[Close]

BLAST of MS010859 vs. NCBI nr
Match: XP_022142234.1 (putative nuclear RNA export factor SDE5 isoform X1 [Momordica charantia])

HSP 1 Score: 793.9 bits (2049), Expect = 7.4e-226
Identity = 425/454 (93.61%), Postives = 427/454 (94.05%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 420

Query: 421 QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV
Sbjct: 421 QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 444

[Close]

BLAST of MS010859 vs. NCBI nr
Match: XP_022142235.1 (putative nuclear RNA export factor SDE5 isoform X2 [Momordica charantia])

HSP 1 Score: 747.3 bits (1928), Expect = 7.9e-212
Identity = 400/429 (93.24%), Postives = 402/429 (93.71%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 419

Query: 421 QISSLSQIP 430
           QISSLSQIP
Sbjct: 421 QISSLSQIP 419

[Close]

BLAST of MS010859 vs. NCBI nr
Match: XP_022142236.1 (putative nuclear RNA export factor SDE5 isoform X3 [Momordica charantia])

HSP 1 Score: 747.3 bits (1928), Expect = 7.9e-212
Identity = 401/434 (92.40%), Postives = 404/434 (93.09%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 420

Query: 421 QISSLSQIPSIKHL 435
           QISSLSQIP  + L
Sbjct: 421 QISSLSQIPCYEAL 424

[Close]

BLAST of MS010859 vs. NCBI nr
Match: XP_038881794.1 (putative nuclear RNA export factor SDE5 [Benincasa hispida])

HSP 1 Score: 583.6 bits (1503), Expect = 1.5e-162
Identity = 334/467 (71.52%), Postives = 375/467 (80.30%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKE YGV+ASK  +EDV LKSL+DAFGS FSL EIASAY +A + ADLA EIL+Q QG
Sbjct: 1   MTGKETYGVSASKCAEEDVALKSLIDAFGSAFSLQEIASAYFEAGHKADLAGEILFQMQG 60

Query: 61  STPSSASNGKIGNGDNLGKG--SENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSK 120
           ST SSASNG++ NGDNL KG  SE SYQV G+ KTAK K+QPFS GTVS++IGKE+A SK
Sbjct: 61  STSSSASNGEVRNGDNLAKGKVSERSYQVKGNLKTAKLKVQPFSTGTVSNIIGKEFACSK 120

Query: 121 SSANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREV 180
            SAN+FT+VYKPV+VGVKVLHESS EGDCT+  S+ HLH DME+FLFKMLGDGF LKREV
Sbjct: 121 PSANKFTKVYKPVKVGVKVLHESSCEGDCTSLPSDFHLHHDMEDFLFKMLGDGFSLKREV 180

Query: 181 IREVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSR- 240
           IREV+G       +SMENLLNRST P EER GSGNK +  +T  S     L  I C    
Sbjct: 181 IREVIGSCGYDMKKSMENLLNRSTTPAEERLGSGNK-STDMTAASCSRSDL--ISCQRNK 240

Query: 241 --------NGNMASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMK 300
                   NGNMASSKK LELTNL KTR DLQKEIL  LF+ASEEPEEE P RRTV + K
Sbjct: 241 ADNHYTGGNGNMASSKKVLELTNLEKTRSDLQKEILIALFDASEEPEEESP-RRTVPRRK 300

Query: 301 RSGAFGQLVSEPFKDMDAEDEKHVEHQAENSLD--VDDEENTYQLLRKAVREYRGTMNEY 360
           +  A+GQLVSEPF+DMDAE EK V+++ +  LD  V+DEEN+YQLLRKAVREYR TM EY
Sbjct: 301 QFKAYGQLVSEPFEDMDAEHEKLVQYKEQIDLDVEVEDEENSYQLLRKAVREYRRTMKEY 360

Query: 361 YAAAIDAFAKGDYVRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLH 420
           YAAAIDAFAKGD VRA KL DEGHF+ KKAQEADEQS QLIF+P RNADTE+DEILLDL+
Sbjct: 361 YAAAIDAFAKGDSVRAVKLIDEGHFYHKKAQEADEQSNQLIFEP-RNADTEEDEILLDLN 420

Query: 421 NLGGREAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           +LGGREAVSVLKSQISSLS IPSIKHLKV +EA+DKDTSKRSCRRLV
Sbjct: 421 DLGGREAVSVLKSQISSLSGIPSIKHLKVTMEADDKDTSKRSCRRLV 462

[Close]

BLAST of MS010859 vs. NCBI nr
Match: XP_008439864.1 (PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439865.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439866.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439867.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo])

HSP 1 Score: 583.2 bits (1502), Expect = 2.0e-162
Identity = 329/467 (70.45%), Postives = 374/467 (80.09%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKE YG+NASK  +ED+VL SL+DAFGS FSL+EIASAY KA Y ADLA EIL+Q + 
Sbjct: 1   MTGKETYGLNASKCSEEDIVLNSLVDAFGSEFSLEEIASAYFKAGYKADLAGEILFQMRE 60

Query: 61  STPSSASNGKIGNGDNLGKG--SENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSK 120
           ST +SA N  +GNGDNLGKG  SE  YQV G+ KTAK K+QPFS GTVS++IGKEYA SK
Sbjct: 61  STSNSALNDDVGNGDNLGKGKVSEKKYQVKGNLKTAKLKVQPFSTGTVSNIIGKEYACSK 120

Query: 121 SSANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREV 180
            S N FT+V KPV+V +KVLHESSSEGDCT+  S+  LH +ME+FLFKMLGDGFRLKREV
Sbjct: 121 PSGNNFTKVNKPVKVEMKVLHESSSEGDCTSLPSDFDLHHEMEDFLFKMLGDGFRLKREV 180

Query: 181 IREVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGT--LTCYSLLSLKLM------ 240
           IREV+G       +SMENLLNRST PV+ER GSGNK   +   TC    S+         
Sbjct: 181 IREVIGSCGYDMKKSMENLLNRSTTPVDERLGSGNKSTDSTAATCSRSGSISCQRNKAEN 240

Query: 241 -FIFCPSRNGNMASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMK 300
            +    SRNGN+ASSKK LE+TNL KTR DLQKE+LT LFNASEEPEEE P RR V + K
Sbjct: 241 HYPGGSSRNGNLASSKKVLEMTNLEKTRSDLQKEVLTALFNASEEPEEESP-RRIVPRRK 300

Query: 301 RSGAFGQLVSEPFKDMDAEDEKHVEHQAENSLD--VDDEENTYQLLRKAVREYRGTMNEY 360
           + GA+GQLVSEPFKD+DAE EK VE+  +  LD  V+DEEN+YQLLRKAVREYRGTM EY
Sbjct: 301 QFGAYGQLVSEPFKDVDAEREKRVEYNDQIDLDVEVEDEENSYQLLRKAVREYRGTMKEY 360

Query: 361 YAAAIDAFAKGDYVRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLH 420
           YAAAIDAFAKGD VRAAKL DEGHFF KKAQEADEQS QLIF+P R+ADTEDDE+LLDLH
Sbjct: 361 YAAAIDAFAKGDSVRAAKLIDEGHFFHKKAQEADEQSNQLIFEP-RHADTEDDEMLLDLH 420

Query: 421 NLGGREAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           +LGG+EAV VLKSQISSLS IPSIKHLKVI+EA+DK+TSKRSCRRLV
Sbjct: 421 DLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

[Close]

BLAST of MS010859 vs. ExPASy Swiss-Prot
Match: Q9LUQ3 (Putative nuclear RNA export factor SDE5 OS=Arabidopsis thaliana OX=3702 GN=SDE5 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.3e-43
Identity = 149/444 (33.56%), Postives = 231/444 (52.03%), Query Frame = 0


Query: 21  LKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQGSTPSS---ASNGKIGNGDNL 80
           L+ LLD FGS FSLD+IA+AY +A  + D+A EIL      TP                +
Sbjct: 17  LQVLLDTFGSRFSLDDIAAAYCQASQNVDVAGEILSAMAEKTPQCDQVEMKTATSKPTQV 76

Query: 81  GKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSSANQFTQVYKPVQVGVKV 140
               E   Q +   K  +PK    S GTVSSVIGKEYAR++  +N   +  KP+++  + 
Sbjct: 77  YVPKEVPRQEDSKAKVWRPKRNSISNGTVSSVIGKEYARTRPISNAPKEATKPLKINSRD 136

Query: 141 LHES---SSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIREVLGRLILLSFQSM 200
           + E+   S E   +N    S    D+E F+ KMLG+GF+  +EVI +VLG       +S 
Sbjct: 137 IPETEIWSEEMRKSNEGKISRAPTDVEEFIVKMLGEGFQASQEVIHQVLGVCGYDVKKST 196

Query: 201 ENLLNRSTIPVEERRGSGNK------PNGTLTCYSLLSLKLMFIFCPSRNGNMASSKKGL 260
           E LL+ S        G  N+      P    T  + + L+ +     +R      S++G 
Sbjct: 197 EKLLDFSDTKKYADVGISNEVMSKVDPQRQSTSCNQMELQKISQSVGAR--TFTGSQEGR 256

Query: 261 ELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSEPFKDMDAE 320
              N       L+KE+L  LF+ +E   ++ P+       +R G  G+ V +P +D   E
Sbjct: 257 NAKN------GLEKEVLEALFSGAERYVDK-PKVTRHFGERRPGVAGRPVFKPLEDPFQE 316

Query: 321 DEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDYVRAAKLTD 380
               V+ Q+ N+   DD+EN ++  RKAVRE+   M EYY AA +AF+KG+  RA +L +
Sbjct: 317 RVVAVK-QSSNTSKEDDDENEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVE 376

Query: 381 EGHFFRKKAQEADEQSCQLIFDPSRNADT---EDDEILLDLHNLGGREAVSVLKSQISSL 440
           +GHFF +KA+EAD++S   + D ++  D+   ED+ + ++++    +EA+ +LK Q+   
Sbjct: 377 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 436

Query: 441 SQIPSIKHLKVIIEANDKD-TSKR 449
           S I S K+L+V +    +D  SKR
Sbjct: 437 SGISSFKYLRVQLGEKKEDFKSKR 450

[Close]

BLAST of MS010859 vs. ExPASy TrEMBL
Match: A0A6J1CL01 (putative nuclear RNA export factor SDE5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012400 PE=4 SV=1)

HSP 1 Score: 793.9 bits (2049), Expect = 3.6e-226
Identity = 425/454 (93.61%), Postives = 427/454 (94.05%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 420

Query: 421 QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV
Sbjct: 421 QISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 444

[Close]

BLAST of MS010859 vs. ExPASy TrEMBL
Match: A0A6J1CLL7 (putative nuclear RNA export factor SDE5 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111012400 PE=4 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 3.8e-212
Identity = 401/434 (92.40%), Postives = 404/434 (93.09%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 420

Query: 421 QISSLSQIPSIKHL 435
           QISSLSQIP  + L
Sbjct: 421 QISSLSQIPCYEAL 424

[Close]

BLAST of MS010859 vs. ExPASy TrEMBL
Match: A0A6J1CKC5 (putative nuclear RNA export factor SDE5 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012400 PE=4 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 3.8e-212
Identity = 400/429 (93.24%), Postives = 402/429 (93.71%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG
Sbjct: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60

Query: 61  STPSSASNGKIGNGDNLGKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120
           STPSSASNGKIGNGDNL KGSENSYQ NGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS
Sbjct: 61  STPSSASNGKIGNGDNLCKGSENSYQGNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSS 120

Query: 121 ANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180
           ANQFTQVYKPV+VGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR
Sbjct: 121 ANQFTQVYKPVKVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIR 180

Query: 181 EVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGTLTCYSLLSLKLMFIFCPSRNGN 240
           EVLG       +SMENLLNRSTIPVEERRGSGNKPNGT T  S           P  NGN
Sbjct: 181 EVLGSCGYDMKKSMENLLNRSTIPVEERRGSGNKPNGTTTASS---------SSPGGNGN 240

Query: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300
           MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE
Sbjct: 241 MASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSE 300

Query: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDY 360
           PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAID FAKGDY
Sbjct: 301 PFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDVFAKGDY 360

Query: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGREAVSVLKS 420
           VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP RNADTEDDEILLDLHNLGGREAVSVLKS
Sbjct: 361 VRAAKLTDEGHFFRKKAQEADEQSCQLIFDP-RNADTEDDEILLDLHNLGGREAVSVLKS 419

Query: 421 QISSLSQIP 430
           QISSLSQIP
Sbjct: 421 QISSLSQIP 419

[Close]

BLAST of MS010859 vs. ExPASy TrEMBL
Match: A0A1S3B0H0 (putative nuclear RNA export factor SDE5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484526 PE=4 SV=1)

HSP 1 Score: 583.2 bits (1502), Expect = 9.6e-163
Identity = 329/467 (70.45%), Postives = 374/467 (80.09%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKE YG+NASK  +ED+VL SL+DAFGS FSL+EIASAY KA Y ADLA EIL+Q + 
Sbjct: 1   MTGKETYGLNASKCSEEDIVLNSLVDAFGSEFSLEEIASAYFKAGYKADLAGEILFQMRE 60

Query: 61  STPSSASNGKIGNGDNLGKG--SENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSK 120
           ST +SA N  +GNGDNLGKG  SE  YQV G+ KTAK K+QPFS GTVS++IGKEYA SK
Sbjct: 61  STSNSALNDDVGNGDNLGKGKVSEKKYQVKGNLKTAKLKVQPFSTGTVSNIIGKEYACSK 120

Query: 121 SSANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREV 180
            S N FT+V KPV+V +KVLHESSSEGDCT+  S+  LH +ME+FLFKMLGDGFRLKREV
Sbjct: 121 PSGNNFTKVNKPVKVEMKVLHESSSEGDCTSLPSDFDLHHEMEDFLFKMLGDGFRLKREV 180

Query: 181 IREVLGRLILLSFQSMENLLNRSTIPVEERRGSGNKPNGT--LTCYSLLSLKLM------ 240
           IREV+G       +SMENLLNRST PV+ER GSGNK   +   TC    S+         
Sbjct: 181 IREVIGSCGYDMKKSMENLLNRSTTPVDERLGSGNKSTDSTAATCSRSGSISCQRNKAEN 240

Query: 241 -FIFCPSRNGNMASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMK 300
            +    SRNGN+ASSKK LE+TNL KTR DLQKE+LT LFNASEEPEEE P RR V + K
Sbjct: 241 HYPGGSSRNGNLASSKKVLEMTNLEKTRSDLQKEVLTALFNASEEPEEESP-RRIVPRRK 300

Query: 301 RSGAFGQLVSEPFKDMDAEDEKHVEHQAENSLD--VDDEENTYQLLRKAVREYRGTMNEY 360
           + GA+GQLVSEPFKD+DAE EK VE+  +  LD  V+DEEN+YQLLRKAVREYRGTM EY
Sbjct: 301 QFGAYGQLVSEPFKDVDAEREKRVEYNDQIDLDVEVEDEENSYQLLRKAVREYRGTMKEY 360

Query: 361 YAAAIDAFAKGDYVRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLH 420
           YAAAIDAFAKGD VRAAKL DEGHFF KKAQEADEQS QLIF+P R+ADTEDDE+LLDLH
Sbjct: 361 YAAAIDAFAKGDSVRAAKLIDEGHFFHKKAQEADEQSNQLIFEP-RHADTEDDEMLLDLH 420

Query: 421 NLGGREAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           +LGG+EAV VLKSQISSLS IPSIKHLKVI+EA+DK+TSKRSCRRLV
Sbjct: 421 DLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

[Close]

BLAST of MS010859 vs. ExPASy TrEMBL
Match: A0A6J1KLP7 (putative nuclear RNA export factor SDE5 OS=Cucurbita maxima OX=3661 GN=LOC111496867 PE=4 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 4.0e-161
Identity = 327/462 (70.78%), Postives = 368/462 (79.65%), Query Frame = 0


Query: 1   MTGKEAYGVNASKFGKEDVVLKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQG 60
           MTGKE  GVN SK  +ED +LKSL DAFGS FSL+EIASAYLKA Y+A+LA EIL+Q QG
Sbjct: 1   MTGKETCGVNGSKCVEEDTMLKSLFDAFGSAFSLNEIASAYLKAGYNANLACEILFQMQG 60

Query: 61  STPSSASNGKIGNGDNLG--KGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSK 120
           ST SSASNG++GNGDNLG  K  E SYQV G+QKT K K+QPFSAGTVS+VIGKEYARSK
Sbjct: 61  STSSSASNGELGNGDNLGQYKVFEKSYQVKGNQKTGKSKVQPFSAGTVSNVIGKEYARSK 120

Query: 121 SSANQFTQVYKPVQVGVKVLHESSSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREV 180
            SAN  T+VYKPV+VGVK LHES  EG+CT   S+ HLH DME+FLFKMLGDGF+LKREV
Sbjct: 121 PSANNITKVYKPVKVGVKALHESPREGNCTGIPSDFHLHHDMEDFLFKMLGDGFKLKREV 180

Query: 181 IREVLGRLILLSFQSMENLLNRSTIPVEERRGSG-NKPNGTLTCYSLLSLKLMFIFCPSR 240
           IREVLG       +SME LLNRS  PV+ER GSG N  + T+   S   L       P  
Sbjct: 181 IREVLGSCGYDMKKSMEILLNRSITPVDERLGSGKNSTDMTVASCSRSDLISRQRNKPEN 240

Query: 241 -----NGNMASSKKGLELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSG 300
                NGN+ASSKK +ELTN  K R DLQKE+LT LFNASEEPEEELP RRTV +MK+S 
Sbjct: 241 HYLGGNGNIASSKKDMELTNREKARIDLQKEVLTALFNASEEPEEELP-RRTVPRMKQSR 300

Query: 301 AFGQLVSEPFKDMDAEDEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAI 360
           A   L+SEPFKDM+AE EK VE++ + SLD + EE++YQLLRKAVREYRGTM EYYAA I
Sbjct: 301 ARDWLLSEPFKDMEAESEKRVEYEEKPSLDDEAEESSYQLLRKAVREYRGTMKEYYAAGI 360

Query: 361 DAFAKGDYVRAAKLTDEGHFFRKKAQEADEQSCQLIFDPSRNADTEDDEILLDLHNLGGR 420
           DAFAKGD VRAAKL DEGHFF KKAQEADEQS QL+F+PS NADTEDDE+LLDLH++GG+
Sbjct: 361 DAFAKGDSVRAAKLIDEGHFFHKKAQEADEQSSQLLFEPS-NADTEDDEMLLDLHDIGGK 420

Query: 421 EAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRLV 455
           EAV VLKSQISSLS IPSIKHLKVI EA+DKDTSKRSCRRLV
Sbjct: 421 EAVRVLKSQISSLSGIPSIKHLKVIFEADDKDTSKRSCRRLV 460

[Close]

BLAST of MS010859 vs. TAIR 10
Match: AT3G15390.1 (silencing defective 5 )

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-44
Identity = 149/444 (33.56%), Postives = 231/444 (52.03%), Query Frame = 0


Query: 21  LKSLLDAFGSTFSLDEIASAYLKADYSADLAAEILYQTQGSTPSS---ASNGKIGNGDNL 80
           L+ LLD FGS FSLD+IA+AY +A  + D+A EIL      TP                +
Sbjct: 17  LQVLLDTFGSRFSLDDIAAAYCQASQNVDVAGEILSAMAEKTPQCDQVEMKTATSKPTQV 76

Query: 81  GKGSENSYQVNGSQKTAKPKIQPFSAGTVSSVIGKEYARSKSSANQFTQVYKPVQVGVKV 140
               E   Q +   K  +PK    S GTVSSVIGKEYAR++  +N   +  KP+++  + 
Sbjct: 77  YVPKEVPRQEDSKAKVWRPKRNSISNGTVSSVIGKEYARTRPISNAPKEATKPLKINSRD 136

Query: 141 LHES---SSEGDCTNFTSESHLHQDMENFLFKMLGDGFRLKREVIREVLGRLILLSFQSM 200
           + E+   S E   +N    S    D+E F+ KMLG+GF+  +EVI +VLG       +S 
Sbjct: 137 IPETEIWSEEMRKSNEGKISRAPTDVEEFIVKMLGEGFQASQEVIHQVLGVCGYDVKKST 196

Query: 201 ENLLNRSTIPVEERRGSGNK------PNGTLTCYSLLSLKLMFIFCPSRNGNMASSKKGL 260
           E LL+ S        G  N+      P    T  + + L+ +     +R      S++G 
Sbjct: 197 EKLLDFSDTKKYADVGISNEVMSKVDPQRQSTSCNQMELQKISQSVGAR--TFTGSQEGR 256

Query: 261 ELTNLGKTRFDLQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSEPFKDMDAE 320
              N       L+KE+L  LF+ +E   ++ P+       +R G  G+ V +P +D   E
Sbjct: 257 NAKN------GLEKEVLEALFSGAERYVDK-PKVTRHFGERRPGVAGRPVFKPLEDPFQE 316

Query: 321 DEKHVEHQAENSLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDYVRAAKLTD 380
               V+ Q+ N+   DD+EN ++  RKAVRE+   M EYY AA +AF+KG+  RA +L +
Sbjct: 317 RVVAVK-QSSNTSKEDDDENEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVE 376

Query: 381 EGHFFRKKAQEADEQSCQLIFDPSRNADT---EDDEILLDLHNLGGREAVSVLKSQISSL 440
           +GHFF +KA+EAD++S   + D ++  D+   ED+ + ++++    +EA+ +LK Q+   
Sbjct: 377 KGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYF 436

Query: 441 SQIPSIKHLKVIIEANDKD-TSKR 449
           S I S K+L+V +    +D  SKR
Sbjct: 437 SGISSFKYLRVQLGEKKEDFKSKR 450

[Close]

BLAST of MS010859 vs. TAIR 10
Match: AT3G15390.2 (silencing defective 5 )

HSP 1 Score: 102.4 bits (254), Expect = 9.5e-22
Identity = 70/193 (36.27%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 260 LQKEILTTLFNASEEPEEELPRRRTVSKMKRSGAFGQLVSEPFKDMDAEDEKHVEHQAEN 319
           L+KE+L  LF+ +E   ++ P+       +R G  G+ V +P +D   E    V+ Q+ N
Sbjct: 69  LEKEVLEALFSGAERYVDK-PKVTRHFGERRPGVAGRPVFKPLEDPFQERVVAVK-QSSN 128

Query: 320 SLDVDDEENTYQLLRKAVREYRGTMNEYYAAAIDAFAKGDYVRAAKLTDEGHFFRKKAQE 379
           +   DD+EN ++  RKAVRE+   M EYY AA +AF+KG+  RA +L ++GHFF +KA+E
Sbjct: 129 TSKEDDDENEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVEKGHFFGQKARE 188

Query: 380 ADEQSCQLIFDPSRNADT---EDDEILLDLHNLGGREAVSVLKSQISSLSQIPSIKHLKV 439
           AD++S   + D ++  D+   ED+ + ++++    +EA+ +LK Q+   S I S K+L+V
Sbjct: 189 ADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYFSGISSFKYLRV 248

Query: 440 IIEANDKD-TSKR 449
            +    +D  SKR
Sbjct: 249 QLGEKKEDFKSKR 259

The following BLAST results are available for this feature:

BLAST of MS010859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142234.1	7.4e-226	93.61	putative nuclear RNA export factor SDE5 isoform X1 [Momordica charantia]	[more]
XP_022142235.1	7.9e-212	93.24	putative nuclear RNA export factor SDE5 isoform X2 [Momordica charantia]	[more]
XP_022142236.1	7.9e-212	92.40	putative nuclear RNA export factor SDE5 isoform X3 [Momordica charantia]	[more]
XP_038881794.1	1.5e-162	71.52	putative nuclear RNA export factor SDE5 [Benincasa hispida]	[more]
XP_008439864.1	2.0e-162	70.45	PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP...	[more]

BLAST of MS010859 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUQ3	4.3e-43	33.56	Putative nuclear RNA export factor SDE5 OS=Arabidopsis thaliana OX=3702 GN=SDE5 ...	[more]

BLAST of MS010859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL01	3.6e-226	93.61	putative nuclear RNA export factor SDE5 isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1CLL7	3.8e-212	92.40	putative nuclear RNA export factor SDE5 isoform X3 OS=Momordica charantia OX=367...	[more]
A0A6J1CKC5	3.8e-212	93.24	putative nuclear RNA export factor SDE5 isoform X2 OS=Momordica charantia OX=367...	[more]
A0A1S3B0H0	9.6e-163	70.45	putative nuclear RNA export factor SDE5 isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1KLP7	4.0e-161	70.78	putative nuclear RNA export factor SDE5 OS=Cucurbita maxima OX=3661 GN=LOC111496...	[more]

BLAST of MS010859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15390.1	3.0e-44	33.56	silencing defective 5	[more]
AT3G15390.2	9.5e-22	36.27	silencing defective 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013899	Domain of unknown function DUF1771	SMART	SM01162	DUF1771_2	coord: 329..395 e-value: 3.8E-13 score: 59.7
IPR013899	Domain of unknown function DUF1771	PFAM	PF08590	DUF1771	coord: 330..390 e-value: 1.0E-11 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..96
None	No IPR available	PANTHER	PTHR47872:SF3	PROTEIN SILENCING DEFECTIVE PROTEIN	coord: 5..454
None	No IPR available	PANTHER	PTHR47872	NUCLEAR RNA EXPORT FACTOR SDE5-RELATED	coord: 5..454

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010859.1	MS010859.1	mRNA