Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGCCACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAATGAGAAAGACTTGAGGTTTGCCTTAAAACTAAATCGGTTAATTTGGAGATTTTTGTTTGCTATCGATTTATATCCTTTTTCCAGTTGTAGTTAACTTTTGTTTTTGAGCTTTGGTATTGCCTTGGATTTTCCTTAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCGGAGAAACAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATCGAATTGCGCAAAAAGGTTTGGAAAATATTCTATTTTTCTAAAAAAAAAAAAAAAGAAATTGCTGAAACGAATGACTATGTTGTTCTTGGGAAGTTAACTTTGGAGAGTTATAAAAGGAAAAACAATACACTTTTCTAGCCTTTAGCGAACTTATTATTGCGCATGAAGAAATCTTTGCTGGTAGATTGTAGATTGTCCCAACAGAACTGCAGAACCATAGATATTCTCAGGGGCTAGAAGAACCAAACTCCATAAGTTATAGCAAGTTTAAGAATCCCTGGGGATTTTGGAGATCAGGCTAGCTACGAACTAAAGATGCCAATTACGTGTTGTTGTGCCTCCTAGGATTTATTCTAGGTCAGATGAATTCACTTCAATGTTTACTTTCATAGGTCACGTCTGGTGTTTAGGAGACTTGCACTTATCTCTCTTTCACAGACCTGCGGGCAATGATGTCGGAACTTAACTGTATGTTCATTGGTATAACAAAATTAGAAGGCATACAAAATTAGAAGGCATACTTAAGTTTGGGCACCTCTTGAAAAGTAGAAATGTCAGATGGTTCCCTTTCGGAAAAATTCAAATGGCTTTGTGATTTGACCATACTACTGCCACAAATGATACAGATTACAGACCATGGTTAGGGAGTGTCGTGGGATGGAGGGTTAGGGGAGGTGATTTAAGCTGTGAGACAATGCATTTGGTTTTCTCCAACTGAAATACTCCTATATAGTCGTGTATGTATTGCATTTTTTATCACATAAGTTGTGTATGACAGAAGAAACAAGAAAGAAAACTGCCTTCAGAGTATATATTTTTTTCTTCTGAGCATCTGGGATCTCTTTTGTAAATGTCCTAAATTTTCTTGTAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATTCTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAGGAAGAGAAGCCATTTGCCCCAATTTCTGGTATTTTACAAAAAAATTGCATATTAAACACAAGTCTCTTCAATTAAGAAAGATGACATAATAATAATTGCAAGTTCTGCCATAATACTCGGGGAAAAAAGAAATGTCCATCTTAAAGAATCAGATCAGACATTATTTTTCTTCACAAGGAAGCTAAAAGTCAGGTTAATTATGAAAAATTAGTTGGTAAAAGTTAATTTTATAACATTGATAATGCATTCTTTAAAAGAAAACAACAGTCTTCAAGCCTTAAATTTTATTTTATTTTTATTTTTTTGGGTATGAACTCTGGAACTTGGAAAGTATTTCGACCTAACATTGGAAATTGTCATGTAGTTTTGATCCCAAGGCTGTGGTTTTCTTTGTAGAGACGACGACGTACGACAGTGGTAACATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGTCCCATCGACAAGTCACAGACAGCAACAACCCAATTGGTTGCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAGAAGTCGAGGCCAAAGCCCCGAAGTAAACGAGACAAAAAGAAAGGAAGAAAAAAGAAA
mRNA sequence
ATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGCCACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCGGAGAAACAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATCGAATTGCGCAAAAAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATTCTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAGGAAGAGAAGCCATTTGCCCCAATTTCTGAGACGACGACGTACGACAGTGGTAACATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGTCCCATCGACAAGTCACAGACAGCAACAACCCAATTGGTTGCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAGAAGTCGAGGCCAAAGCCCCGAAGTAAACGAGACAAAAAGAAAGGAAGAAAAAAGAAA
Coding sequence (CDS)
ATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGCCACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCGGAGAAACAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATCGAATTGCGCAAAAAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATTCTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAGGAAGAGAAGCCATTTGCCCCAATTTCTGAGACGACGACGTACGACAGTGGTAACATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGTCCCATCGACAAGTCACAGACAGCAACAACCCAATTGGTTGCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAGAAGTCGAGGCCAAAGCCCCGAAGTAAACGAGACAAAAAGAAAGGAAGAAAAAAGAAA
Protein sequence
MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
Homology
BLAST of MS010824 vs. NCBI nr
Match:
XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia])
HSP 1 Score: 350.5 bits (898), Expect = 9.2e-93
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD
Sbjct: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
Query: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK
Sbjct: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
Query: 181 PRSKRDKKKGRKKK 195
PRSKRDKKKGRKKK
Sbjct: 181 PRSKRDKKKGRKKK 194
BLAST of MS010824 vs. NCBI nr
Match:
XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])
HSP 1 Score: 294.3 bits (752), Expect = 7.8e-76
Identity = 166/198 (83.84%), Postives = 181/198 (91.41%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+NDG+EG ELAQP RHIKKRAL+NKAL+VSFNEKDLRD+VTGFHKRKKKRRKEA+KQ
Sbjct: 9 MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQ 68
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEE----EEEKPFAPISET 120
QEEA RRKRIE RKKR+ EK+LVLYGG+LPADRPVDE+NDDHEE EEEKP AP SET
Sbjct: 69 QEEAIRRKRIEARKKRRLEKDLVLYGGVLPADRPVDEENDDHEEGEEDEEEKPLAPFSET 128
Query: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180
TTYDSGNIKVTVITSEVSR+ EI PIDK QTATTQL AKDKKHNLP+TKKKPFKKVAKQ+
Sbjct: 129 TTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAKQR 188
Query: 181 SRPKPRSKRDKKKGRKKK 195
SRPK RSKRDK+KG+KKK
Sbjct: 189 SRPKARSKRDKRKGKKKK 206
BLAST of MS010824 vs. NCBI nr
Match:
XP_008455785.1 (PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo])
HSP 1 Score: 285.4 bits (729), Expect = 3.6e-73
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKNDG+EGGELAQP RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QNDD E+EEE+P AP SE TYD
Sbjct: 61 KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDEEEEPLAPFSEARTYD 120
Query: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
+GN+KVTV TSEVSR+GEI PIDK QTA QL+ KDKKHNLPITKKK FKKVAKQ+SRPK
Sbjct: 121 NGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPK 180
Query: 181 PRSKRDKKKGRKKK 195
RSKRDKKKGRKKK
Sbjct: 181 LRSKRDKKKGRKKK 194
BLAST of MS010824 vs. NCBI nr
Match:
XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 281.2 bits (718), Expect = 6.8e-72
Identity = 162/198 (81.82%), Postives = 176/198 (88.89%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKN+ +EGG L QP RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDD----HEEEEEKPFAPISET 120
QEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQNDD E+EEEKP APISET
Sbjct: 61 QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180
TTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
Query: 181 SRPKPRSKRDKKKGRKKK 195
SR K RSK DKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MS010824 vs. NCBI nr
Match:
KAG7026594.1 (hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 161/198 (81.31%), Postives = 176/198 (88.89%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKN+ +EGG L QP RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDD----HEEEEEKPFAPISET 120
QEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQNDD E+EEE+P APISET
Sbjct: 61 QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120
Query: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180
TTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
Query: 181 SRPKPRSKRDKKKGRKKK 195
SR K RSK DKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MS010824 vs. ExPASy TrEMBL
Match:
A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)
HSP 1 Score: 350.5 bits (898), Expect = 4.4e-93
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD
Sbjct: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
Query: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK
Sbjct: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
Query: 181 PRSKRDKKKGRKKK 195
PRSKRDKKKGRKKK
Sbjct: 181 PRSKRDKKKGRKKK 194
BLAST of MS010824 vs. ExPASy TrEMBL
Match:
A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 1.8e-73
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKNDG+EGGELAQP RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QNDD E+EEE+P AP SE TYD
Sbjct: 61 KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDEEEEPLAPFSEARTYD 120
Query: 121 SGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPK 180
+GN+KVTV TSEVSR+GEI PIDK QTA QL+ KDKKHNLPITKKK FKKVAKQ+SRPK
Sbjct: 121 NGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSRPK 180
Query: 181 PRSKRDKKKGRKKK 195
RSKRDKKKGRKKK
Sbjct: 181 LRSKRDKKKGRKKK 194
BLAST of MS010824 vs. ExPASy TrEMBL
Match:
A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)
HSP 1 Score: 278.1 bits (710), Expect = 2.8e-71
Identity = 161/198 (81.31%), Postives = 175/198 (88.38%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKN+ +EGG L QP RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDD----HEEEEEKPFAPISET 120
QEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQNDD E+EEEKP APISET
Sbjct: 61 QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180
T YDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++K
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
Query: 181 SRPKPRSKRDKKKGRKKK 195
SR K RSK DKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MS010824 vs. ExPASy TrEMBL
Match:
A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)
HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70
Identity = 160/198 (80.81%), Postives = 175/198 (88.38%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKN+ EGG L QP RH+KK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDD----HEEEEEKPFAPISET 120
QEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQNDD E+EEEKP APISET
Sbjct: 61 QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180
TTYDSGNIKVTV TSEV R+ EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
Query: 181 SRPKPRSKRDKKKGRKKK 195
SR K RSK DKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MS010824 vs. ExPASy TrEMBL
Match:
A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)
HSP 1 Score: 275.0 bits (702), Expect = 2.4e-70
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 0
Query: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVKNDG+EGGELAQP RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYD 120
+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QNDD EEE+P AP+SE TTYD
Sbjct: 61 KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPLAPLSEATTYD 120
Query: 121 SGNIKVTVITSEVSRDGEICPIDKSQTA--TTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180
+GN+KVTV TSEVSR+ EI PIDK QTA T QL+ KDKKHNLPITKKK FKKVAKQ+ R
Sbjct: 121 NGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGR 180
Query: 181 PKPRSKRDKKKGRKKK 195
PK RSKRDKKKGRKKK
Sbjct: 181 PKLRSKRDKKKGRKKK 196
BLAST of MS010824 vs. TAIR 10
Match:
AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )
HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 0
Query: 7 DEGGELAQP-RGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAK 66
+E G LA P RHI KRA KNK+L VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA
Sbjct: 8 EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67
Query: 67 RRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEEEEKPFAPISETTTYDSGNIK 126
RRKRIE RK RK E+ +V G D +++ D E+EE +P A S TT YD+G +K
Sbjct: 68 RRKRIEARKNRKLEELMVAGNGEDNEDGEAEDE-VDAEDEEAEPDASTSATTMYDTGELK 127
Query: 127 VTVITSEVSRDGEICPIDKSQTATTQLVAKDK---KHNLPITKKKPFKKVAKQKSRPKPR 186
VTV TSE+SR+ E PI K +T +T+ + K K +P+ K KP K+ ++++S K
Sbjct: 128 VTVTTSEISREEEE-PIRKEKTQSTESGSTAKASTKQPVPVRKTKPMKQ-SRRRSTTKTM 187
Query: 187 SKRDKKK 190
KRDKKK
Sbjct: 188 KKRDKKK 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022142095.1 | 9.2e-93 | 100.00 | ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 r... | [more] |
XP_038881021.1 | 7.8e-76 | 83.84 | nucleolar protein 12 [Benincasa hispida] | [more] |
XP_008455785.1 | 3.6e-73 | 82.99 | PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo] | [more] |
XP_023517913.1 | 6.8e-72 | 81.82 | ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo] | [more] |
KAG7026594.1 | 1.5e-71 | 81.31 | hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CL67 | 4.4e-93 | 100.00 | ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A1S3C1A3 | 1.8e-73 | 82.99 | ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3... | [more] |
A0A6J1EG67 | 2.8e-71 | 81.31 | ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380... | [more] |
A0A6J1KRQ7 | 1.1e-70 | 80.81 | ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ... | [more] |
A0A0A0KYB4 | 2.4e-70 | 80.61 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G11240.1 | 2.1e-31 | 53.48 | CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ... | [more] |