Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCTCTTTCAGAGCTCGAATCCACTTCCCAAATTTCCCCCTTTTTAAAAACCCACCAATTTCTCCCCGTCTACTCCCAATCAACGCCGCCCCGCCCCTCCGACGCCGTCGCCGGCCACTCGCATCCTCAGCGCCGCCGGCGAAATCCAGACCAATCGCTGAGCCGTCGGATTTGAAGATCATCGACCCAGATGAGGGGTCAAGGGTCCTGATCGTGGGAGCGGTTTCGGTGGGCGTGGTCCTGTTTCTGATGGGGTGCGACGCCCAAACGGCGTCGGCTTTGGGGCCCGAAGGGCCGTTGGTGGAGGAATTTTGGGACAATGTGAGAAGATATGCAATTTACGCCGTTACTGTGAGTACCGGTGCTCTTTACACCATTTTCCTGCCCATTTTCGAGCTCCTGAAGAACCCAATTTCTGCTGTTCTTGTTTTGGCTATTTTTGGGGGTGGGATTTTCATTGTCTCCCAGGTGCTCTCTGCCATGGTTGGTGTCTCTGAATTTTCCTATGATTATGCCTAT
mRNA sequence
ATGGCTACCTCTTTCAGAGCTCGAATCCACTTCCCAAATTTCCCCCTTTTTAAAAACCCACCAATTTCTCCCCGTCTACTCCCAATCAACGCCGCCCCGCCCCTCCGACGCCGTCGCCGGCCACTCGCATCCTCAGCGCCGCCGGCGAAATCCAGACCAATCGCTGAGCCGTCGGATTTGAAGATCATCGACCCAGATGAGGGGTCAAGGGTCCTGATCGTGGGAGCGGTTTCGGTGGGCGTGGTCCTGTTTCTGATGGGGTGCGACGCCCAAACGGCGTCGGCTTTGGGGCCCGAAGGGCCGTTGGTGGAGGAATTTTGGGACAATGTGAGAAGATATGCAATTTACGCCGTTACTGTGAGTACCGGTGCTCTTTACACCATTTTCCTGCCCATTTTCGAGCTCCTGAAGAACCCAATTTCTGCTGTTCTTGTTTTGGCTATTTTTGGGGGTGGGATTTTCATTGTCTCCCAGGTGCTCTCTGCCATGGTTGGTGTCTCTGAATTTTCCTATGATTATGCCTAT
Coding sequence (CDS)
ATGGCTACCTCTTTCAGAGCTCGAATCCACTTCCCAAATTTCCCCCTTTTTAAAAACCCACCAATTTCTCCCCGTCTACTCCCAATCAACGCCGCCCCGCCCCTCCGACGCCGTCGCCGGCCACTCGCATCCTCAGCGCCGCCGGCGAAATCCAGACCAATCGCTGAGCCGTCGGATTTGAAGATCATCGACCCAGATGAGGGGTCAAGGGTCCTGATCGTGGGAGCGGTTTCGGTGGGCGTGGTCCTGTTTCTGATGGGGTGCGACGCCCAAACGGCGTCGGCTTTGGGGCCCGAAGGGCCGTTGGTGGAGGAATTTTGGGACAATGTGAGAAGATATGCAATTTACGCCGTTACTGTGAGTACCGGTGCTCTTTACACCATTTTCCTGCCCATTTTCGAGCTCCTGAAGAACCCAATTTCTGCTGTTCTTGTTTTGGCTATTTTTGGGGGTGGGATTTTCATTGTCTCCCAGGTGCTCTCTGCCATGGTTGGTGTCTCTGAATTTTCCTATGATTATGCCTAT
Protein sequence
MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDLKIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY
Homology
BLAST of MS010716 vs. NCBI nr
Match:
XP_022133418.1 (uncharacterized protein LOC111005989 [Momordica charantia])
HSP 1 Score: 334.3 bits (856), Expect = 6.1e-88
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL 60
MATSFR+RIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL
Sbjct: 1 MATSFRSRIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL 60
Query: 61 KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV 120
KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV
Sbjct: 61 KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV 120
Query: 121 STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY
Sbjct: 121 STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 175
BLAST of MS010716 vs. NCBI nr
Match:
XP_023518006.1 (uncharacterized protein LOC111781569 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 240.7 bits (613), Expect = 9.2e-60
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAEP 60
MATS R RIHF FP +NPPISP L+PIN PLR RPLASS+P PAKS P
Sbjct: 1 MATSLRTRIHFSIFPTSRNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPTNTWP 60
Query: 61 SDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAI 120
SDLK I+ P E SR LI+GAVSVGV LFLMG D + A ALGPEGPLVEEFWDNVRRYAI
Sbjct: 61 SDLKAIEAHPMESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
Query: 121 YAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
YAVTVS+GALYTI LPIFELLKNPI+AVLVLAIFGG IFI+SQVLSAMVGV+EFSY+YAY
Sbjct: 121 YAVTVSSGALYTILLPIFELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
BLAST of MS010716 vs. NCBI nr
Match:
XP_022926795.1 (uncharacterized protein LOC111433802 [Cucurbita moschata])
HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 135/180 (75.00%), Postives = 145/180 (80.56%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAEP 60
MATS R RIHF FP KNPPISP L+PIN PLR RPLASS+P PAKS P
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
Query: 61 SDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAI 120
SDLK I+ P E SR LI+GAVSVGV LFLMG D + A ALGPEGPLVEEFWDNVRRYAI
Sbjct: 61 SDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
Query: 121 YAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
YAVTVS+GALYTI LPI ELLKNPI+AVLVLAIFGG IFI+SQVLSAMVGV+EFSY+YAY
Sbjct: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
BLAST of MS010716 vs. NCBI nr
Match:
XP_023543366.1 (uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 238.4 bits (607), Expect = 4.6e-59
Identity = 135/181 (74.59%), Postives = 143/181 (79.01%), Query Frame = 0
Query: 1 MATSFRARI-HFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAE 60
MATSFR+RI HFP P FKNP +SP PI A PLR RPLA+SAP PAK
Sbjct: 1 MATSFRSRIHHFPISPTFKNPSVSPPPFPIKATSPLRGPFRPLAASAPPQSPAKPLKTPH 60
Query: 61 PSDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYA 120
P D KIID P SR LI+GAVSVGV LFLMGCD A ALGPEGPLVEEFWDNVRRYA
Sbjct: 61 PLDFKIIDETPIGNSRFLIIGAVSVGVALFLMGCDGDRALALGPEGPLVEEFWDNVRRYA 120
Query: 121 IYAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYA 176
IYAVTVSTGALYTI LPIFELLKNPI+AVLVLAIFGG IF++SQVLSAMVGV+EFSYDYA
Sbjct: 121 IYAVTVSTGALYTILLPIFELLKNPITAVLVLAIFGGAIFVISQVLSAMVGVNEFSYDYA 180
BLAST of MS010716 vs. NCBI nr
Match:
XP_023003383.1 (uncharacterized protein LOC111497006 [Cucurbita maxima])
HSP 1 Score: 238.4 bits (607), Expect = 4.6e-59
Identity = 134/180 (74.44%), Postives = 145/180 (80.56%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAEP 60
MATS R RIHF FP KNPPISP L+PIN PLR RPLASS+P PAKS P
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
Query: 61 SDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAI 120
+DLK I+ P E SR LI+GAVSVGV LFLMG D + A ALGPEGPLVEEFWDNVRRYAI
Sbjct: 61 TDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
Query: 121 YAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
YAVTVS+GALYTI LPI ELLKNPI+AVLVLAIFGG IFI+SQVLSAMVGV+EFSY+YAY
Sbjct: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
BLAST of MS010716 vs. ExPASy TrEMBL
Match:
A0A6J1BZ31 (Uncharacterized protein ycf33 OS=Momordica charantia OX=3673 GN=LOC111005989 PE=3 SV=1)
HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL 60
MATSFR+RIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL
Sbjct: 1 MATSFRSRIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPPAKSRPIAEPSDL 60
Query: 61 KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV 120
KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV
Sbjct: 61 KIIDPDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAIYAVTV 120
Query: 121 STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY
Sbjct: 121 STGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 175
BLAST of MS010716 vs. ExPASy TrEMBL
Match:
A0A6J1EM42 (Uncharacterized protein ycf33 OS=Cucurbita moschata OX=3662 GN=LOC111433802 PE=3 SV=1)
HSP 1 Score: 239.6 bits (610), Expect = 1.0e-59
Identity = 135/180 (75.00%), Postives = 145/180 (80.56%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAEP 60
MATS R RIHF FP KNPPISP L+PIN PLR RPLASS+P PAKS P
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
Query: 61 SDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAI 120
SDLK I+ P E SR LI+GAVSVGV LFLMG D + A ALGPEGPLVEEFWDNVRRYAI
Sbjct: 61 SDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
Query: 121 YAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
YAVTVS+GALYTI LPI ELLKNPI+AVLVLAIFGG IFI+SQVLSAMVGV+EFSY+YAY
Sbjct: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
BLAST of MS010716 vs. ExPASy TrEMBL
Match:
A0A6J1KWC7 (Uncharacterized protein ycf33 OS=Cucurbita maxima OX=3661 GN=LOC111497006 PE=3 SV=1)
HSP 1 Score: 238.4 bits (607), Expect = 2.2e-59
Identity = 134/180 (74.44%), Postives = 145/180 (80.56%), Query Frame = 0
Query: 1 MATSFRARIHFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAEP 60
MATS R RIHF FP KNPPISP L+PIN PLR RPLASS+P PAKS P
Sbjct: 1 MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
Query: 61 SDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYAI 120
+DLK I+ P E SR LI+GAVSVGV LFLMG D + A ALGPEGPLVEEFWDNVRRYAI
Sbjct: 61 TDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
Query: 121 YAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYAY 176
YAVTVS+GALYTI LPI ELLKNPI+AVLVLAIFGG IFI+SQVLSAMVGV+EFSY+YAY
Sbjct: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
BLAST of MS010716 vs. ExPASy TrEMBL
Match:
A0A6J1GE79 (Uncharacterized protein ycf33 OS=Cucurbita moschata OX=3662 GN=LOC111453148 PE=3 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 1.9e-58
Identity = 133/181 (73.48%), Postives = 143/181 (79.01%), Query Frame = 0
Query: 1 MATSFRARI-HFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAP---PAKSRPIAE 60
MATSFR+RI H P P FKNP +SP PI A PLR RPLA+SAP PAK +
Sbjct: 1 MATSFRSRIHHVPISPTFKNPSVSPPPFPIKATSPLRGSFRPLAASAPPQSPAKPLKTPQ 60
Query: 61 PSDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYA 120
P D KIID P SR LI+GAVSVGV LFLMGCD A ALGPEGPLVEEFWDNVRRYA
Sbjct: 61 PLDFKIIDETPIGNSRFLIIGAVSVGVALFLMGCDGDRALALGPEGPLVEEFWDNVRRYA 120
Query: 121 IYAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYA 176
IYAVTVS+GALYTI LPIFELLKNPI+AVLVLAIFGG IF++SQVLSAMVGV+EFSYDYA
Sbjct: 121 IYAVTVSSGALYTILLPIFELLKNPITAVLVLAIFGGAIFVISQVLSAMVGVNEFSYDYA 180
BLAST of MS010716 vs. ExPASy TrEMBL
Match:
A0A6J1IVK7 (Uncharacterized protein ycf33 OS=Cucurbita maxima OX=3661 GN=LOC111478796 PE=3 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.7e-57
Identity = 131/181 (72.38%), Postives = 143/181 (79.01%), Query Frame = 0
Query: 1 MATSFRARI-HFPNFPLFKNPPISPRLLPINAAPPLRRRRRPLASSAPP---AKSRPIAE 60
MATSFR+RI HFP P FK+P +SP PI A PLR RPLA+SAPP AK +
Sbjct: 1 MATSFRSRIHHFPISPTFKSPSVSPPPFPIKATSPLRGPFRPLAASAPPQSTAKPLKTPQ 60
Query: 61 PSDLKIID--PDEGSRVLIVGAVSVGVVLFLMGCDAQTASALGPEGPLVEEFWDNVRRYA 120
P D KIID P SR LI+GAVSVGV LFLMGC+ + A ALGPEGPLVEEFWDNVRRYA
Sbjct: 61 PLDFKIIDETPIGNSRFLIIGAVSVGVALFLMGCNGERALALGPEGPLVEEFWDNVRRYA 120
Query: 121 IYAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVSQVLSAMVGVSEFSYDYA 176
IYAVTVSTGALYTI LPI ELLKNPI+AVLVLAI GG IF++SQVLSAMVGV+EFSYDYA
Sbjct: 121 IYAVTVSTGALYTILLPILELLKNPITAVLVLAILGGAIFVISQVLSAMVGVNEFSYDYA 180
BLAST of MS010716 vs. TAIR 10
Match:
AT4G16410.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 0
Query: 39 RRPLASSAPPAKSRPIAEPSDLKIIDPDEGSRVLIVGAVSVGVVLFL-MGCDAQTASALG 98
RR L + + A+P L + + R +VG VSVG+++ L +G DA+ A ALG
Sbjct: 51 RRRLTTKSSRNSKLERAQPPPLGL---ERHWRYAVVGGVSVGLMMVLVLGMDAEKAMALG 110
Query: 99 PEGPLVEEFWDNVRRYAIYAVTVSTGALYTIFLPIFELLKNPISAVLVLAIFGGGIFIVS 158
PEGPL+EEFWDNVRRY +YA+TVSTGAL +F PIFELLKNPISA+L+L I GG +IVS
Sbjct: 111 PEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIFELLKNPISAILILLILGGSFYIVS 170
Query: 159 QVLSAMVGVSEFSYDYAY 176
QV+SAM+GV+EF+Y Y+Y
Sbjct: 171 QVVSAMIGVNEFAYQYSY 185
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022133418.1 | 6.1e-88 | 99.43 | uncharacterized protein LOC111005989 [Momordica charantia] | [more] |
XP_023518006.1 | 9.2e-60 | 75.00 | uncharacterized protein LOC111781569 [Cucurbita pepo subsp. pepo] | [more] |
XP_022926795.1 | 2.1e-59 | 75.00 | uncharacterized protein LOC111433802 [Cucurbita moschata] | [more] |
XP_023543366.1 | 4.6e-59 | 74.59 | uncharacterized protein LOC111803269 [Cucurbita pepo subsp. pepo] | [more] |
XP_023003383.1 | 4.6e-59 | 74.44 | uncharacterized protein LOC111497006 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1BZ31 | 3.0e-88 | 99.43 | Uncharacterized protein ycf33 OS=Momordica charantia OX=3673 GN=LOC111005989 PE=... | [more] |
A0A6J1EM42 | 1.0e-59 | 75.00 | Uncharacterized protein ycf33 OS=Cucurbita moschata OX=3662 GN=LOC111433802 PE=3... | [more] |
A0A6J1KWC7 | 2.2e-59 | 74.44 | Uncharacterized protein ycf33 OS=Cucurbita maxima OX=3661 GN=LOC111497006 PE=3 S... | [more] |
A0A6J1GE79 | 1.9e-58 | 73.48 | Uncharacterized protein ycf33 OS=Cucurbita moschata OX=3662 GN=LOC111453148 PE=3... | [more] |
A0A6J1IVK7 | 2.7e-57 | 72.38 | Uncharacterized protein ycf33 OS=Cucurbita maxima OX=3661 GN=LOC111478796 PE=3 S... | [more] |
Match Name | E-value | Identity | Description | |
AT4G16410.1 | 1.9e-34 | 56.52 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 ... | [more] |