MS010712 (gene) Bitter gourd (TR) v1

Overview
NameMS010712
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold35: 1530501 .. 1530770 (+)
RNA-Seq ExpressionMS010712
SyntenyMS010712
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

mRNA sequence

GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

Coding sequence (CDS)

GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

Protein sequence

AYQGLKLAITSSTVVPEVAPEPPPPFPRIREPIKPATIVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF
Homology
BLAST of MS010712 vs. NCBI nr
Match: KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0

Query: 8   AITSSTVVPEVAPEPPPPFPRIREPI-KP--------ATIVVSRQQLELLLAKSAKFAST 67
           A T+S+ V EV   PPP   RI   I KP        ATIVVS+QQLEL+L KS  F S 
Sbjct: 46  AFTTSSAVAEVQHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSK 105

Query: 68  GIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           GIAV+FSD F+ D+ CPRWHP+LPTIPEVR++
Sbjct: 106 GIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 137

BLAST of MS010712 vs. NCBI nr
Match: KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 0

Query: 8   AITSSTVVPEVAPE-PPPPFP-RIREPI-KPA--------TIVVSRQQLELLLAKSAKFA 67
           A T+S+ V E   E  PPP P RI   I KPA        TIVVS+QQLEL+L KS  F 
Sbjct: 43  AFTTSSAVAEAEVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFG 102

Query: 68  STGIAVRFSDSFEFDEQCPRWHPSLPTIPE 87
           S GIAV+FSDSF+ D+ CPRWHP+LPTIPE
Sbjct: 103 SKGIAVQFSDSFKVDDGCPRWHPALPTIPE 132

BLAST of MS010712 vs. NCBI nr
Match: KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 8   AITSSTVVPEVAPEPPP-------------PFPRIREPIKPATIVVSRQQLELLLAKSAK 67
           A T+S+ V EV    PP             P    + P K  TIVVS+QQLEL+L  S K
Sbjct: 40  AYTTSSAVLEVDRGAPPLPVSIDDDDAVSKPDALCKLP-KTTTIVVSKQQLELILRNSRK 99

Query: 68  FASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           FAS GIAV+FSDSFE D++CPRW P+LPTI EV ++
Sbjct: 100 FASKGIAVQFSDSFEVDDRCPRWCPALPTILEVHNY 134

BLAST of MS010712 vs. NCBI nr
Match: KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 36  ATIVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           ATIVVS++QLE LL  S +F S GIAV+FSDSF+FD  C RW P LPTI EV ++
Sbjct: 63  ATIVVSKEQLEFLLTNSQQFGSQGIAVQFSDSFKFDRSCSRWCPVLPTILEVHNY 117

BLAST of MS010712 vs. NCBI nr
Match: KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           IVV+RQQLELLL  S +F S GIAVRFS+SF+  E+  +W PSL TIPEVR F
Sbjct: 100 IVVTRQQLELLLRNSKQFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVRKF 150

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0

Query: 8   AITSSTVVPEVAPEPPPPFPRIREPI-KP--------ATIVVSRQQLELLLAKSAKFAST 67
           A T+S+ V EV   PPP   RI   I KP        ATIVVS+QQLEL+L KS  F S 
Sbjct: 46  AFTTSSAVAEVQHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSK 105

Query: 68  GIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           GIAV+FSD F+ D+ CPRWHP+LPTIPEVR++
Sbjct: 106 GIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 137

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 55/94 (58.51%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 8   AITSSTVVPEVAPE-PPPPFP-RIREPI-KPA--------TIVVSRQQLELLLAKSAKFA 67
           A T+S+ V E   E  PPP P RI   I KPA        TIVVS+QQLEL+L KS  F 
Sbjct: 43  AFTTSSAVAEAEVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFG 102

Query: 68  STGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           S GIAV+FSDSF+ D+ CPRWHP+LPTIPEVR++
Sbjct: 103 SKGIAVQFSDSFKVDDGCPRWHPALPTIPEVRNY 136

BLAST of MS010712 vs. ExPASy TrEMBL
Match: B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           IVV+RQQLELLL  S +F S GIAVRFS+SF+  E+  +W PSL TIPEV+ F
Sbjct: 100 IVVTRQQLELLLRNSKQFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEV 88
           IVV+RQQLELLL  S +    GIAV+FS+SF+  E   +W PSL TIPEV
Sbjct: 100 IVVTRQQLELLLRNSKQLKLRGIAVQFSESFK--EGKRKWQPSLVTIPEV 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025575.17.2e-1657.61hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... [more]
KAE8647639.11.1e-1358.89hypothetical protein Csa_004428 [Cucumis sativus][more]
KAG6603830.11.1e-1151.04hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594706.14.5e-1063.64hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF9851460.11.2e-0766.04hypothetical protein H0E87_015599 [Populus deltoides][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CLY83.5e-1657.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KHP31.0e-1558.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1[more]
B9HD501.7e-0764.15Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... [more]
A0A5N5M9533.1e-0460.00Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148:SF50SUBFAMILY NOT NAMEDcoord: 36..88
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 36..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010712.1MS010712.1mRNA