MS010712 (gene) Bitter gourd (TR) v1

Overview


Name	MS010712
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold35: 1530501 .. 1530770 (+)
RNA-Seq Expression	MS010712
Synteny	MS010712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

mRNA sequence

GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

Coding sequence (CDS)

GCTTATCAGGGCCTGAAACTGGCCATCACCAGTTCCACTGTCGTCCCAGAAGTTGCCCCTGAGCCTCCTCCTCCATTTCCTCGTATTCGTGAGCCTATTAAGCCTGCCACCATTGTGGTCAGCAGGCAACAGCTTGAGTTGCTTTTGGCAAAATCCGCCAAGTTTGCCTCTACAGGCATTGCTGTTCGATTCTCCGATAGTTTTGAGTTCGATGAACAATGCCCTCGATGGCACCCTTCCTTGCCCACCATTCCGGAGGTTCGCAGTTTC

Protein sequence

AYQGLKLAITSSTVVPEVAPEPPPPFPRIREPIKPATIVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF

Homology

[Close]

BLAST of MS010712 vs. NCBI nr
Match: KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 8   AITSSTVVPEVAPEPPPPFPRIREPI-KP--------ATIVVSRQQLELLLAKSAKFAST 67
           A T+S+ V EV   PPP   RI   I KP        ATIVVS+QQLEL+L KS  F S 
Sbjct: 46  AFTTSSAVAEVQHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSK 105

Query: 68  GIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           GIAV+FSD F+ D+ CPRWHP+LPTIPEVR++
Sbjct: 106 GIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 137

[Close]

BLAST of MS010712 vs. NCBI nr
Match: KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 8   AITSSTVVPEVAPE-PPPPFP-RIREPI-KPA--------TIVVSRQQLELLLAKSAKFA 67
           A T+S+ V E   E  PPP P RI   I KPA        TIVVS+QQLEL+L KS  F 
Sbjct: 43  AFTTSSAVAEAEVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFG 102

Query: 68  STGIAVRFSDSFEFDEQCPRWHPSLPTIPE 87
           S GIAV+FSDSF+ D+ CPRWHP+LPTIPE
Sbjct: 103 SKGIAVQFSDSFKVDDGCPRWHPALPTIPE 132

[Close]

BLAST of MS010712 vs. NCBI nr
Match: KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 8   AITSSTVVPEVAPEPPP-------------PFPRIREPIKPATIVVSRQQLELLLAKSAK 67
           A T+S+ V EV    PP             P    + P K  TIVVS+QQLEL+L  S K
Sbjct: 40  AYTTSSAVLEVDRGAPPLPVSIDDDDAVSKPDALCKLP-KTTTIVVSKQQLELILRNSRK 99

Query: 68  FASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           FAS GIAV+FSDSFE D++CPRW P+LPTI EV ++
Sbjct: 100 FASKGIAVQFSDSFEVDDRCPRWCPALPTILEVHNY 134

[Close]

BLAST of MS010712 vs. NCBI nr
Match: KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 36  ATIVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           ATIVVS++QLE LL  S +F S GIAV+FSDSF+FD  C RW P LPTI EV ++
Sbjct: 63  ATIVVSKEQLEFLLTNSQQFGSQGIAVQFSDSFKFDRSCSRWCPVLPTILEVHNY 117

[Close]

BLAST of MS010712 vs. NCBI nr
Match: KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           IVV+RQQLELLL  S +F S GIAVRFS+SF+  E+  +W PSL TIPEVR F
Sbjct: 100 IVVTRQQLELLLRNSKQFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVRKF 150

[Close]

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 8   AITSSTVVPEVAPEPPPPFPRIREPI-KP--------ATIVVSRQQLELLLAKSAKFAST 67
           A T+S+ V EV   PPP   RI   I KP        ATIVVS+QQLEL+L KS  F S 
Sbjct: 46  AFTTSSAVAEVQHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSK 105

Query: 68  GIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           GIAV+FSD F+ D+ CPRWHP+LPTIPEVR++
Sbjct: 106 GIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 137

[Close]

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 55/94 (58.51%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 8   AITSSTVVPEVAPE-PPPPFP-RIREPI-KPA--------TIVVSRQQLELLLAKSAKFA 67
           A T+S+ V E   E  PPP P RI   I KPA        TIVVS+QQLEL+L KS  F 
Sbjct: 43  AFTTSSAVAEAEVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFG 102

Query: 68  STGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           S GIAV+FSDSF+ D+ CPRWHP+LPTIPEVR++
Sbjct: 103 SKGIAVQFSDSFKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of MS010712 vs. ExPASy TrEMBL
Match: B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEVRSF 91
           IVV+RQQLELLL  S +F S GIAVRFS+SF+  E+  +W PSL TIPEV+ F
Sbjct: 100 IVVTRQQLELLLRNSKQFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of MS010712 vs. ExPASy TrEMBL
Match: A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-04
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 38  IVVSRQQLELLLAKSAKFASTGIAVRFSDSFEFDEQCPRWHPSLPTIPEV 88
           IVV+RQQLELLL  S +    GIAV+FS+SF+  E   +W PSL TIPEV
Sbjct: 100 IVVTRQQLELLLRNSKQLKLRGIAVQFSESFK--EGKRKWQPSLVTIPEV 147

The following BLAST results are available for this feature:

BLAST of MS010712 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025575.1	7.2e-16	57.61	hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245...	[more]
KAE8647639.1	1.1e-13	58.89	hypothetical protein Csa_004428 [Cucumis sativus]	[more]
KAG6603830.1	1.1e-11	51.04	hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594706.1	4.5e-10	63.64	hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF9851460.1	1.2e-07	66.04	hypothetical protein H0E87_015599 [Populus deltoides]	[more]

BLAST of MS010712 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLY8	3.5e-16	57.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KHP3	1.0e-15	58.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1	[more]
B9HD50	1.7e-07	64.15	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ...	[more]
A0A5N5M953	3.1e-04	60.00	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1	[more]

BLAST of MS010712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148:SF50	SUBFAMILY NOT NAMED	coord: 36..88
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 36..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010712.1	MS010712.1	mRNA