MS010692 (gene) Bitter gourd (TR) v1

Overview


Name	MS010692
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerases IV and V subunit 4-like
Location	scaffold35: 1435352 .. 1436004 (-)
RNA-Seq Expression	MS010692
Synteny	MS010692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGCTTTAAATGGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTATTATCAGCAGATCCAACAATAAAAATCCCTACGTGAGTGAACACTGTTAAGTATTTTTTTGAAAGAAGATATCACATGCTTTTTGAGGAGTTGAAGATATCACATGCTTACAAACTTGAATTGCTTTTTTATTAGGTCATTTGACAGGGGACTGCTGTATGCTAAAAGAGCCAATCATTATGTAAATACCGAGTCAGTTAGACCAGTTCTTGAGTATCCTTGATTTGGTGAATAGGTTATTAGATTATATTGTTTTAATTTCTTTGTGGCTCTTTTTATGGATGGAACAATTAATATACTATTTCACGTGGGTCTAATTCTGTTGAGTGCTTAACTAAAAGTACTAGAACCCTCAAGCAACATGGTGTAACGGACAGTGAGGTATTTAACTCTATCTTCTTTTTTGTCTGTTTTTCTTTTTTTTCAACTAGAATTCTTTAGAATGATTTACTGACCCAGTATTAAATTTCACGCAGATATGTGTGATTGCTAATGTCTGCCCAGACACCATTGATGAGGTTTTTGCTCTTCTTCCATCCTTGAAG

mRNA sequence

TTGGCTTTAAATGGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTATTATCAGCAGATCCAACAATAAAAATCCCTACGTCATTTGACAGGGGACTGCTGTATGCTAAAAGAGCCAATCATTATGTAAATACCGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGCAACATGGTGTAACGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACCATTGATGAGGTTTTTGCTCTTCTTCCATCCTTGAAG

Coding sequence (CDS)

TTGGCTTTAAATGGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTATTATCAGCAGATCCAACAATAAAAATCCCTACGTCATTTGACAGGGGACTGCTGTATGCTAAAAGAGCCAATCATTATGTAAATACCGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGCAACATGGTGTAACGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACCATTGATGAGGTTTTTGCTCTTCTTCCATCCTTGAAG

Protein sequence

LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK

Homology

[Close]

BLAST of MS010692 vs. NCBI nr
Match: XP_022133315.1 (DNA-directed RNA polymerases IV and V subunit 4-like [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN
Sbjct: 87  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 146

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Sbjct: 147 HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 193

[Close]

BLAST of MS010692 vs. NCBI nr
Match: XP_023003382.1 (DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRAN
Sbjct: 92  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRAN 151

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVNTESVRPVLETLK++GV DSEICVIANVCPDTIDEVFAL+PSLK
Sbjct: 152 HYVNTESVRPVLETLKKYGVADSEICVIANVCPDTIDEVFALVPSLK 198

[Close]

BLAST of MS010692 vs. NCBI nr
Match: XP_038881040.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispida] >XP_038881041.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-46
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRAN
Sbjct: 87  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRAN 146

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVN+ESVRPVLETLK+HG+T+SEICVIANVCPDT DEVFALLPSLK
Sbjct: 147 HYVNSESVRPVLETLKKHGLTESEICVIANVCPDTTDEVFALLPSLK 193

[Close]

BLAST of MS010692 vs. NCBI nr
Match: XP_038881037.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881038.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881039.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-46
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRAN
Sbjct: 91  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRAN 150

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVN+ESVRPVLETLK+HG+T+SEICVIANVCPDT DEVFALLPSLK
Sbjct: 151 HYVNSESVRPVLETLKKHGLTESEICVIANVCPDTTDEVFALLPSLK 197

[Close]

BLAST of MS010692 vs. NCBI nr
Match: KAG6594716.1 (DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 6.1e-46
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRAN
Sbjct: 92  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRAN 151

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVNTESVRPVLETLK++GV DSEICVIANVCPDT DEVFAL+PSLK
Sbjct: 152 HYVNTESVRPVLETLKKYGVADSEICVIANVCPDTTDEVFALVPSLK 198

[Close]

BLAST of MS010692 vs. ExPASy Swiss-Prot
Match: Q6DBA5 (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-25
Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 8   ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTES 67
           +LP+N   +C+MDCEA Q+L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +S
Sbjct: 84  DLPEN--AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQS 143

Query: 68  VRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           VR VLE LK +G++D E+CVIAN   +++DEV A +PSLK
Sbjct: 144 VRKVLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLK 181

[Close]

BLAST of MS010692 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-17
Identity = 38/95 (40.00%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 13  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVL 72
           +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ L Y KR + Y N ++VR V 
Sbjct: 19  LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 73  ETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           E L +H +T+ E+CV+ N+CP+T++E  A++PSLK
Sbjct: 79  EILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

[Close]

BLAST of MS010692 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-05
Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 48  SFDRGLLYAKRANHYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 107
           +F + L YA++ + Y N  S++ V   L +  + + EI  +AN+CP+  DE  +L+PSLK
Sbjct: 75  TFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK 134

[Close]

BLAST of MS010692 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 28/92 (30.43%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 16  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETL 75
           + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L
Sbjct: 30  ETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLL 89

Query: 76  KQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
            Q  +   E+  +AN+CP+T +E  AL+PSL+
Sbjct: 90  LQKKLHKFELACLANLCPETAEESKALIPSLE 119

[Close]

BLAST of MS010692 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 28/92 (30.43%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 16  QCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVLETL 75
           + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L
Sbjct: 30  ETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLL 89

Query: 76  KQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
            Q  +   E+  +AN+CP+T +E  AL+PSL+
Sbjct: 90  LQKKLHKFELACLANLCPETAEESKALIPSLE 119

[Close]

BLAST of MS010692 vs. ExPASy TrEMBL
Match: A0A6J1BUW9 (DNA-directed RNA polymerases IV and V subunit 4-like OS=Momordica charantia OX=3673 GN=LOC111005925 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN
Sbjct: 87  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 146

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK
Sbjct: 147 HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 193

[Close]

BLAST of MS010692 vs. ExPASy TrEMBL
Match: A0A6J1KMD1 (DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497005 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.7e-47
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGL YAKRAN
Sbjct: 92  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRAN 151

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVNTESVRPVLETLK++GV DSEICVIANVCPDTIDEVFAL+PSLK
Sbjct: 152 HYVNTESVRPVLETLKKYGVADSEICVIANVCPDTIDEVFALVPSLK 198

[Close]

BLAST of MS010692 vs. ExPASy TrEMBL
Match: A0A0A0KH45 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.8e-46
Identity = 96/107 (89.72%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRAN
Sbjct: 91  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRAN 150

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVN ESVRPVLETLK++GVTDSEICVIANVCPDT DEVFALLPSLK
Sbjct: 151 HYVNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK 197

[Close]

BLAST of MS010692 vs. ExPASy TrEMBL
Match: A0A1S3B2C2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.0e-46
Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRAN
Sbjct: 91  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRAN 150

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVN ESVRPVLETLK++G+TDSEICVIANVCPDT DEVFALLPSLK
Sbjct: 151 HYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 197

[Close]

BLAST of MS010692 vs. ExPASy TrEMBL
Match: A0A1S3B2C7 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.0e-46
Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   LALNGRAELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRAN 60
           L L    ELPKNVKCQCLMDCEAAQLLQGIQDQMV LSADPTIKIPTSFDRGL YAKRAN
Sbjct: 87  LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRAN 146

Query: 61  HYVNTESVRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           HYVN ESVRPVLETLK++G+TDSEICVIANVCPDT DEVFALLPSLK
Sbjct: 147 HYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 193

[Close]

BLAST of MS010692 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 55/100 (55.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 8   ELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTES 67
           +LP+N   +C+MDCEA Q+L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +S
Sbjct: 84  DLPEN--AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQS 143

Query: 68  VRPVLETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           VR VLE LK +G++D E+CVIAN   +++DEV A +PSLK
Sbjct: 144 VRKVLEPLKTYGISDGEMCVIANASSESVDEVLAFIPSLK 181

[Close]

BLAST of MS010692 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-18
Identity = 38/95 (40.00%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 13  VKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLLYAKRANHYVNTESVRPVL 72
           +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ L Y KR + Y N ++VR V 
Sbjct: 19  LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 73  ETLKQHGVTDSEICVIANVCPDTIDEVFALLPSLK 108
           E L +H +T+ E+CV+ N+CP+T++E  A++PSLK
Sbjct: 79  EILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113

The following BLAST results are available for this feature:

BLAST of MS010692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133315.1	2.6e-49	95.33	DNA-directed RNA polymerases IV and V subunit 4-like [Momordica charantia]	[more]
XP_023003382.1	1.6e-46	90.65	DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima]	[more]
XP_038881040.1	2.7e-46	89.72	DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispi...	[more]
XP_038881037.1	2.7e-46	89.72	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispi...	[more]
KAG6594716.1	6.1e-46	89.72	DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma...	[more]

BLAST of MS010692 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBA5	1.6e-25	55.00	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
O48890	4.7e-17	40.00	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54S04	3.2e-05	36.67	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]
O15514	6.0e-04	30.43	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
Q9D7M8	6.0e-04	30.43	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]

BLAST of MS010692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUW9	1.3e-49	95.33	DNA-directed RNA polymerases IV and V subunit 4-like OS=Momordica charantia OX=3...	[more]
A0A6J1KMD1	7.7e-47	90.65	DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661...	[more]
A0A0A0KH45	3.8e-46	89.72	RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4...	[more]
A0A1S3B2C2	5.0e-46	88.79	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3B2C7	5.0e-46	88.79	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of MS010692 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15950.1	1.1e-26	55.00	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	3.3e-18	40.00	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 6..107 e-value: 9.2E-24 score: 85.7
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 18..106 e-value: 3.7E-7 score: 30.5
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 7..107
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 7..107
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 11..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010692.1	MS010692.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0000166	nucleotide binding