MS010680 (gene) Bitter gourd (TR) v1

Overview


Name	MS010680
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Vacuolar protein sorting/targeting protein like
Location	scaffold35: 1364782 .. 1365222 (-)
RNA-Seq Expression	MS010680
Synteny	MS010680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGATTGACGATCTACCATATTCTAGGCCACAGAAGCAGAAAGCTTCACACCAGAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGAAATCGATCGAGTAAAGGGGTCTTTTCCAGCACAAACAGTACAAAAATCCTCCAAAAGAAGTTTGAAGAATGAACCGTCAGTAGCATTTCAGCAGCCAGAAAGATCGAATTCGGATTCTTTGCCAGATTCTTCTGCATCTGGGAACGAGTACCGTGCCTTGAGAAGAAAATATTTGCTCCTGGAGGAAGAGAGTTTTGCTTTGGGATCAGAACTGAAAGAAGTGGAAGATGAGGTAAAGACCCTTGAAGAAGAGAAGCTCGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGTTCAGAGTTGCAGCCGCCCACCCAGCCACATTTACCACAACTT

mRNA sequence

ATGTCTCGGATTGACGATCTACCATATTCTAGGCCACAGAAGCAGAAAGCTTCACACCAGAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGAAATCGATCGAGTAAAGGGGTCTTTTCCAGCACAAACAGTACAAAAATCCTCCAAAAGAAGTTTGAAGAATGAACCGTCAGTAGCATTTCAGCAGCCAGAAAGATCGAATTCGGATTCTTTGCCAGATTCTTCTGCATCTGGGAACGAGTACCGTGCCTTGAGAAGAAAATATTTGCTCCTGGAGGAAGAGAGTTTTGCTTTGGGATCAGAACTGAAAGAAGTGGAAGATGAGGTAAAGACCCTTGAAGAAGAGAAGCTCGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGTTCAGAGTTGCAGCCGCCCACCCAGCCACATTTACCACAACTT

Coding sequence (CDS)

ATGTCTCGGATTGACGATCTACCATATTCTAGGCCACAGAAGCAGAAAGCTTCACACCAGAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGAAATCGATCGAGTAAAGGGGTCTTTTCCAGCACAAACAGTACAAAAATCCTCCAAAAGAAGTTTGAAGAATGAACCGTCAGTAGCATTTCAGCAGCCAGAAAGATCGAATTCGGATTCTTTGCCAGATTCTTCTGCATCTGGGAACGAGTACCGTGCCTTGAGAAGAAAATATTTGCTCCTGGAGGAAGAGAGTTTTGCTTTGGGATCAGAACTGAAAGAAGTGGAAGATGAGGTAAAGACCCTTGAAGAAGAGAAGCTCGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGTTCAGAGTTGCAGCCGCCCACCCAGCCACATTTACCACAACTT

Protein sequence

MSRIDDLPYSRPQKQKASHQKASTASHLQGKEIDRVKGSFPAQTVQKSSKRSLKNEPSVAFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQPPTQPHLPQL

Homology

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BLAST of MS010680 vs. NCBI nr
Match: XP_023545100.1 (uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKASHQKASTASHLQGK+  DR+KGSFPAQT QKSSKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTPQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 121 GLLDELLVLEGLIDRSELQ 139

[Close]

BLAST of MS010680 vs. NCBI nr
Match: XP_022950616.1 (uncharacterized protein LOC111453661 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 126/139 (90.65%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLP+SRP KQKASHQKASTASHLQGK+  DR+KGSFPAQT QKSSKRSLKNEPSV
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 121 GLLDELLVLEGLIDRSELQ 139

[Close]

BLAST of MS010680 vs. NCBI nr
Match: XP_011658091.1 (uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical protein Csa_003830 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 127/147 (86.39%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASH+Q K+  DR+KGSFPAQT QK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKLG 120
            FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LG+ELK VEDEVKTLEEEKLG
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLG 120

Query: 121 LLDELLVLEGLIDRSELQPPTQPHLPQ 147
           LLDELLVLEGLIDRSELQ     +LPQ
Sbjct: 121 LLDELLVLEGLIDRSELQ-LAHSNLPQ 146

[Close]

BLAST of MS010680 vs. NCBI nr
Match: KAG6603852.1 (hypothetical protein SDJN03_04461, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKASHQKASTASHLQGK+  DR+KGSFPAQT QKSSKRSL NEPSV
Sbjct: 33  MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 92

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 93  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 152

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 153 GLLDELLVLEGLIDRSELQ 171

[Close]

BLAST of MS010680 vs. NCBI nr
Match: KAG7034032.1 (hypothetical protein SDJN02_03758, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKASHQKASTASHLQGK+  DR+KGSFPAQT QKSSKRSL NEPSV
Sbjct: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 121 GLLDELLVLEGLIDRSELQ 139

[Close]

BLAST of MS010680 vs. ExPASy TrEMBL
Match: A0A0A0KMU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 127/147 (86.39%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASH+Q K+  DR+KGSFPAQT QK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKLG 120
            FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LG+ELK VEDEVKTLEEEKLG
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLG 120

Query: 121 LLDELLVLEGLIDRSELQPPTQPHLPQ 147
           LLDELLVLEGLIDRSELQ     +LPQ
Sbjct: 121 LLDELLVLEGLIDRSELQ-LAHSNLPQ 146

[Close]

BLAST of MS010680 vs. ExPASy TrEMBL
Match: A0A6J1GFB4 (uncharacterized protein LOC111453661 OS=Cucurbita moschata OX=3662 GN=LOC111453661 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 126/139 (90.65%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLP+SRP KQKASHQKASTASHLQGK+  DR+KGSFPAQT QKSSKRSLKNEPSV
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 121 GLLDELLVLEGLIDRSELQ 139

[Close]

BLAST of MS010680 vs. ExPASy TrEMBL
Match: A0A6J1ITW9 (uncharacterized protein LOC111478385 OS=Cucurbita maxima OX=3661 GN=LOC111478385 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.1e-55
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKASH KASTASHLQGK+  DR+KGSFPAQT QKSSKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHPKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLKNEPSV 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
           A QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESF+LG+ELKEVEDEVK LEEEKL
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ 138
           GLLDELLVLEGLIDRSELQ
Sbjct: 121 GLLDELLVLEGLIDRSELQ 139

[Close]

BLAST of MS010680 vs. ExPASy TrEMBL
Match: A0A5D3CLN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00520 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASHLQ K+  +R+KGSFPAQT QK+SKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
            FQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESF LG+ELKEVEDEVKTLEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ--PPTQPHL 145
           GLLDELLVLEGLIDRSELQ      PHL
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of MS010680 vs. ExPASy TrEMBL
Match: A0A1S4DU11 (uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MSRIDDLPYSRPQKQKASHQKASTASHLQGKE-IDRVKGSFPAQTVQKSSKRSLKNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASHLQ K+  +R+KGSFPAQT QK+SKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  AFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFALGSELKEVEDEVKTLEEEKL 120
            FQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESF LG+ELKEVEDEVKTLEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQ--PPTQPHL 145
           GLLDELLVLEGLIDRSELQ      PHL
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of MS010680 vs. TAIR 10
Match: AT3G51500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 57/93 (61.29%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 41  PAQTVQKSSKRSLKNEPSVAFQQPERS-NSDSLPDSSASGNEYRALRRKYLLLEEESFAL 100
           P +  +K S RS  N+      Q E S NSDS P     GNEYRALRRKYLLLEE+SFAL
Sbjct: 28  PPRIGKKVSNRSKSNQVHAISHQLEMSPNSDSSP-----GNEYRALRRKYLLLEEDSFAL 87

Query: 101 GSELKEVEDEVKTLEEEKLGLLDELLVLEGLID 133
             ELKE EDEVK LE+EKL LLD+L+V+EGL+D
Sbjct: 88  ERELKEAEDEVKALEDEKLELLDKLVVMEGLVD 115

The following BLAST results are available for this feature:

BLAST of MS010680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545100.1	1.5e-55	91.37	uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo]	[more]
XP_022950616.1	2.6e-55	90.65	uncharacterized protein LOC111453661 [Cucurbita moschata]	[more]
XP_011658091.1	2.6e-55	86.39	uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical ...	[more]
KAG6603852.1	3.4e-55	90.65	hypothetical protein SDJN03_04461, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034032.1	3.4e-55	90.65	hypothetical protein SDJN02_03758, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS010680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMU4	1.3e-55	86.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1	[more]
A0A6J1GFB4	1.3e-55	90.65	uncharacterized protein LOC111453661 OS=Cucurbita moschata OX=3662 GN=LOC1114536...	[more]
A0A6J1ITW9	2.1e-55	90.65	uncharacterized protein LOC111478385 OS=Cucurbita maxima OX=3661 GN=LOC111478385...	[more]
A0A5D3CLN1	1.8e-54	85.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DU11	1.8e-54	85.81	uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=...	[more]

BLAST of MS010680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51500.1	2.1e-18	61.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	PANTHER	PTHR37740	OS02G0193500 PROTEIN	coord: 5..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010680.1	MS010680.1	mRNA