MS010649 (gene) Bitter gourd (TR) v1

Overview
NameMS010649
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF295 domain-containing protein
Locationscaffold35: 1185401 .. 1185769 (-)
RNA-Seq ExpressionMS010649
SyntenyMS010649
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCACCTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCTGAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCGGCGGAGGGCAGCTGGTTGGCGAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACAATATGTTTTGGAAAGAAGTG

mRNA sequence

ATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCACTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCGGCGGAGGGCAGCTGGTTGGCGAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACAATATGTTTTGGAAAGAAGTG

Coding sequence (CDS)

ATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCACTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCGGCGGAGGGCAGCTGGTTGGCGAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACAATATGTTTTGGAAAGAAGTG

Protein sequence

MDDSRVRWSDLPPELWPLETYIDIVWRASIPPFNAISPLLPLDLPSPVFNDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYLHPLSTCYAYNNNMFWKEV
Homology
BLAST of MS010649 vs. NCBI nr
Match: XP_016899202.1 (PREDICTED: putative F-box protein At1g65770 [Cucumis melo] >KAA0025628.1 putative F-box protein [Cucumis melo var. makuwa] >TYK12503.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHET------SNSAASSSSGAAAEGSWLAKVESTKL 120
           VF   + TD  LIRRIIYRLSPLD H+T      S S++SSSS  AAEG WLAKVESTKL
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEG-WLAKVESTKL 120

Query: 121 GKMRYLHPLSTCYA-YNNNMFWKEV 123
           GKMR+LHPLST YA  N+++F KEV
Sbjct: 121 GKMRFLHPLSTRYAKCNSDLFRKEV 144

BLAST of MS010649 vs. NCBI nr
Match: XP_038881861.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 99/150 (66.00%), Postives = 111/150 (74.00%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+T+IDI+        WRAS+PPFNAISPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTHIDILRFRSVCRSWRASLPPFNAISPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGA-----------AAEGSWLAKV 120
           VF   + TD  LIRRIIYRLSPL   +TS+SA+SSSS +           AAEG WLAKV
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLHHRQTSDSASSSSSSSSSSSSSSSSSCAAEG-WLAKV 120

Query: 121 ESTKLGKMRYLHPLSTCYA-YNNNMFWKEV 123
           ESTKLGKMR+LHPLST YA YNN +F KEV
Sbjct: 121 ESTKLGKMRFLHPLSTRYAKYNNELFRKEV 149

BLAST of MS010649 vs. NCBI nr
Match: XP_004134837.2 (putative F-box protein At1g65770 [Cucumis sativus] >KGN48969.1 hypothetical protein Csa_003175 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 7.7e-37
Identity = 92/147 (62.59%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGS--------WLAKVEST 120
           VF   + TD  LIRRIIYRLSPLD H+T + A+SSSS +++  S        WLAKVEST
Sbjct: 61  VFAADHLTDAYLIRRIIYRLSPLDHHQTFDFASSSSSSSSSSSSSFSCPAEGWLAKVEST 120

Query: 121 KLGKMRYLHPLSTCYA-YNNNMFWKEV 123
           KLGKMR+LHPLST YA  N+++  KEV
Sbjct: 121 KLGKMRFLHPLSTRYAKCNSDLLRKEV 147

BLAST of MS010649 vs. NCBI nr
Match: XP_023518907.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.5 bits (397), Expect = 7.2e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNVVSSLLPLDLPSP 60

Query: 61  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYL 120
           +F     TD LLIRR+IYRLSPLD   +S+SA+SSS   AAEG WLAKVESTKLG MR+L
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSS--FAAEG-WLAKVESTKLGTMRFL 120

Query: 121 HPLSTCYA-YNNNMFWKEV 123
           HPLST Y  Y+N +F KEV
Sbjct: 121 HPLSTRYVKYDNEVFRKEV 136

BLAST of MS010649 vs. NCBI nr
Match: KAG6594746.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 9.4e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 61  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYL 120
           +F     TD LLIRR+IYRLSPLD   +S+SA+SSS   AAEG WLAKVESTKLG MR+L
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSS--FAAEG-WLAKVESTKLGTMRFL 120

Query: 121 HPLSTCYA-YNNNMFWKEV 123
           HPLST Y  Y+N +F KEV
Sbjct: 121 HPLSTRYVKYDNEVFRKEV 136

BLAST of MS010649 vs. ExPASy TrEMBL
Match: A0A5A7SHJ7 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00810 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHET------SNSAASSSSGAAAEGSWLAKVESTKL 120
           VF   + TD  LIRRIIYRLSPLD H+T      S S++SSSS  AAEG WLAKVESTKL
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEG-WLAKVESTKL 120

Query: 121 GKMRYLHPLSTCYA-YNNNMFWKEV 123
           GKMR+LHPLST YA  N+++F KEV
Sbjct: 121 GKMRFLHPLSTRYAKCNSDLFRKEV 144

BLAST of MS010649 vs. ExPASy TrEMBL
Match: A0A1S4DT77 (putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHET------SNSAASSSSGAAAEGSWLAKVESTKL 120
           VF   + TD  LIRRIIYRLSPLD H+T      S S++SSSS  AAEG WLAKVESTKL
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEG-WLAKVESTKL 120

Query: 121 GKMRYLHPLSTCYA-YNNNMFWKEV 123
           GKMR+LHPLST YA  N+++F KEV
Sbjct: 121 GKMRFLHPLSTRYAKCNSDLFRKEV 144

BLAST of MS010649 vs. ExPASy TrEMBL
Match: A0A0A0KJJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-37
Identity = 92/147 (62.59%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           M+DSRVRWSDLPPELWP     L+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 61  VF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGS--------WLAKVEST 120
           VF   + TD  LIRRIIYRLSPLD H+T + A+SSSS +++  S        WLAKVEST
Sbjct: 61  VFAADHLTDAYLIRRIIYRLSPLDHHQTFDFASSSSSSSSSSSSSFSCPAEGWLAKVEST 120

Query: 121 KLGKMRYLHPLSTCYA-YNNNMFWKEV 123
           KLGKMR+LHPLST YA  N+++  KEV
Sbjct: 121 KLGKMRFLHPLSTRYAKCNSDLLRKEV 147

BLAST of MS010649 vs. ExPASy TrEMBL
Match: A0A6J1KNW7 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497348 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           MDDSRV+WSDLPPE+ P     LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 61  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYL 120
           +F     TD LLIRR+IYRLSPLD   +S+SA+SSS   AAEG WLAKVESTKLG MR+L
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSS--FAAEG-WLAKVESTKLGTMRFL 120

Query: 121 HPLSTCYA-YNNNMFWKEV 123
           HPLST Y  Y+N +F KEV
Sbjct: 121 HPLSTRYVKYDNEVFRKEV 136

BLAST of MS010649 vs. ExPASy TrEMBL
Match: A0A6J1EGF3 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433939 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 89/139 (64.03%), Postives = 104/139 (74.82%), Query Frame = 0

Query: 1   MDDSRVRWSDLPPELWP-----LETYIDIV--------WRASIPPFNAISPLLPLDLPSP 60
           MDDSRV+WSDLPPE+ P     LETYI+++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIEVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 61  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSSSGAAAEGSWLAKVESTKLGKMRYL 120
           +F     TD LLIRR+IYRLSPLD   +S+SA+SSS   AAEG WLAKVESTKLG MR+L
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSS--FAAEG-WLAKVESTKLGTMRFL 120

Query: 121 HPLSTCYA-YNNNMFWKEV 123
           HPLST Y  Y+N +F KEV
Sbjct: 121 HPLSTRYVKYDNEVFRKEV 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016899202.11.8e-3866.90PREDICTED: putative F-box protein At1g65770 [Cucumis melo] >KAA0025628.1 putativ... [more]
XP_038881861.12.4e-3866.00putative F-box protein At1g65770 [Benincasa hispida][more]
XP_004134837.27.7e-3762.59putative F-box protein At1g65770 [Cucumis sativus] >KGN48969.1 hypothetical prot... [more]
XP_023518907.17.2e-3564.75putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6594746.19.4e-3564.75putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SHJ78.8e-3966.90Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A1S4DT778.8e-3966.90putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV... [more]
A0A0A0KJJ13.7e-3762.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1[more]
A0A6J1KNW74.5e-3564.75putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1EGF31.3e-3464.03putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010649.1MS010649.1mRNA