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MS010624 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTACAGGAAGATAATCTCCTCCTTTTATAACTTCGTTGTCCTCAAACTGTATCCAGGAATCAAGGATGAATCACATGTTAAGCAGAGGGCCAAGAAGGAAGGTTGTGAAGCTCTGGCACATCCTACCTTGTATGATGCTGTGGGCAGGGAATGGTGTTCGGTGTGTTTGTCGAAAGTAATGGAGGGAGAGGAATCACGAGTTCTTCGTCTTCCTTGCCTACATGAGTTTCATAAGATATGCATCAAGAGGTGGTTCCATGAATGCCAGAAAACCTGTCCAATCTGCCAGTTCTGGTTGAGAGATGATGATGGTCAAACAACAGAAGTGCTTACCGAGGAGATGGTAATATGGTTCACTTCCTTTCATGTTGTTGGTTAC ATGGTGTACAGGAAGATAATCTCCTCCTTTTATAACTTCGTTGTCCTCAAACTGTATCCAGGAATCAAGGATGAATCACATGTTAAGCAGAGGGCCAAGAAGGAAGGTTGTGAAGCTCTGGCACATCCTACCTTGTATGATGCTGTGGGCAGGGAATGGTGTTCGGTGTGTTTGTCGAAAGTAATGGAGGGAGAGGAATCACGAGTTCTTCGTCTTCCTTGCCTACATGAGTTTCATAAGATATGCATCAAGAGGTGGTTCCATGAATGCCAGAAAACCTGTCCAATCTGCCAGTTCTGGTTGAGAGATGATGATGGTCAAACAACAGAAGTGCTTACCGAGGAGATGGTAATATGGTTCACTTCCTTTCATGTTGTTGGTTAC ATGGTGTACAGGAAGATAATCTCCTCCTTTTATAACTTCGTTGTCCTCAAACTGTATCCAGGAATCAAGGATGAATCACATGTTAAGCAGAGGGCCAAGAAGGAAGGTTGTGAAGCTCTGGCACATCCTACCTTGTATGATGCTGTGGGCAGGGAATGGTGTTCGGTGTGTTTGTCGAAAGTAATGGAGGGAGAGGAATCACGAGTTCTTCGTCTTCCTTGCCTACATGAGTTTCATAAGATATGCATCAAGAGGTGGTTCCATGAATGCCAGAAAACCTGTCCAATCTGCCAGTTCTGGTTGAGAGATGATGATGGTCAAACAACAGAAGTGCTTACCGAGGAGATGGTAATATGGTTCACTTCCTTTCATGTTGTTGGTTAC MVYRKIISSFYNFVVLKLYPGIKDESHVKQRAKKEGCEALAHPTLYDAVGREWCSVCLSKVMEGEESRVLRLPCLHEFHKICIKRWFHECQKTCPICQFWLRDDDGQTTEVLTEEMVIWFTSFHVVGY Homology
BLAST of MS010624 vs. NCBI nr
Match: XP_022132660.1 (E3 ubiquitin-protein ligase RNF181 homolog [Momordica charantia]) HSP 1 Score: 273.1 bits (697), Expect = 1.2e-69 Identity = 128/136 (94.12%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of MS010624 vs. NCBI nr
Match: XP_038883680.1 (E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida]) HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38 Identity = 84/136 (61.76%), Postives = 101/136 (74.26%), Query Frame = 0
BLAST of MS010624 vs. NCBI nr
Match: XP_022977421.1 (uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]) HSP 1 Score: 160.6 bits (405), Expect = 8.9e-36 Identity = 76/122 (62.30%), Postives = 94/122 (77.05%), Query Frame = 0
BLAST of MS010624 vs. NCBI nr
Match: KAG6603894.1 (hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.4 bits (381), Expect = 5.4e-33 Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 0
BLAST of MS010624 vs. NCBI nr
Match: XP_031276738.1 (E3 ubiquitin-protein ligase At1g12760 [Pistacia vera]) HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23 Identity = 63/138 (45.65%), Postives = 86/138 (62.32%), Query Frame = 0
BLAST of MS010624 vs. ExPASy Swiss-Prot
Match: Q68DV7 (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of MS010624 vs. ExPASy Swiss-Prot
Match: Q6NRV8 (E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis OX=8355 GN=rnf111-b PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.2e-08 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of MS010624 vs. ExPASy Swiss-Prot
Match: Q0V9R0 (E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis OX=8364 GN=rnf111 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.2e-08 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of MS010624 vs. ExPASy Swiss-Prot
Match: Q90ZT7 (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of MS010624 vs. ExPASy Swiss-Prot
Match: Q66J97 (E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis OX=8355 GN=rnf111-c PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of MS010624 vs. ExPASy TrEMBL
Match: A0A6J1BT35 (E3 ubiquitin-protein ligase RNF181 homolog OS=Momordica charantia OX=3673 GN=LOC111005465 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 6.0e-70 Identity = 128/136 (94.12%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of MS010624 vs. ExPASy TrEMBL
Match: A0A6J1IJV3 (uncharacterized protein LOC111477769 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477769 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 4.3e-36 Identity = 76/122 (62.30%), Postives = 94/122 (77.05%), Query Frame = 0
BLAST of MS010624 vs. ExPASy TrEMBL
Match: A0A5B6YSP6 (Putative E3 ubiquitin-protein ligase RHA2A (Fragment) OS=Davidia involucrata OX=16924 GN=Din_004126 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23 Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 0
BLAST of MS010624 vs. ExPASy TrEMBL
Match: A0A2I4FD42 (E3 ubiquitin-protein ligase RNF165-like OS=Juglans regia OX=51240 GN=LOC108997662 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 0
BLAST of MS010624 vs. ExPASy TrEMBL
Match: A0A4S4DKH4 (RING-type domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_030039 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 0
BLAST of MS010624 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein ) HSP 1 Score: 75.1 bits (183), Expect = 4.6e-14 Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 0
BLAST of MS010624 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A ) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10 Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0
BLAST of MS010624 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08 Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 0
BLAST of MS010624 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07 Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 0
BLAST of MS010624 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B ) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06 Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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