MS010597 (gene) Bitter gourd (TR) v1

Overview
NameMS010597
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
Locationscaffold35: 869193 .. 869582 (-)
RNA-Seq ExpressionMS010597
SyntenyMS010597
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATGGAAAAAGGCCGAAGAATCCCGAGAAAGATGAAGGCCAATAATCCCTGCATCCCAAAGCTCAGAGGCGACGCCACGAAGAACAAGCCCCCTTCGCCGATGGGCCTGCTCGAGCGCCTCCGGGAGGCCCTGTTCCGCTTCATCATGCTCTGTGCTCTCTCCAAGGCCTCAAATAATGGTAGTCCCGCCTTCCCAGACGACGCCGTTGCGCGGCGGCGGCAGTACTCGTACTCGAATGCCGCCGACCACCACCACAGCGAGGCCGTCGCCGACTGCATCGAGTTCATCAAGAAGAACGCGTATTCCGACGACTACGCCGCGAGCGACAACGGTAGATCGATGGATGCCGGCACCGACATGGCCGGTTGGGTAAAAATTTCGAGTAAT

mRNA sequence

CCAATGGAAAAAGGCCGAAGAATCCCGAGAAAGATGAAGGCCAATAATCCCTGCATCCCAAAGCTCAGAGGCGACGCCACGAAGAACAAGCCCCCTTCGCCGATGGGCCTGCTCGAGCGCCTCCGGGAGGCCCTGTTCCGCTTCATCATGCTCTGTGCTCTCTCCAAGGCCTCAAATAATGGTAGTCCCGCCTTCCCAGACGACGCCGTTGCGCGGCGGCGGCAGTACTCGTACTCGAATGCCGCCGACCACCACCACAGCGAGGCCGTCGCCGACTGCATCGAGTTCATCAAGAAGAACGCGTATTCCGACGACTACGCCGCGAGCGACAACGGTAGATCGATGGATGCCGGCACCGACATGGCCGGTTGGGTAAAAATTTCGAGTAAT

Coding sequence (CDS)

CCAATGGAAAAAGGCCGAAGAATCCCGAGAAAGATGAAGGCCAATAATCCCTGCATCCCAAAGCTCAGAGGCGACGCCACGAAGAACAAGCCCCCTTCGCCGATGGGCCTGCTCGAGCGCCTCCGGGAGGCCCTGTTCCGCTTCATCATGCTCTGTGCTCTCTCCAAGGCCTCAAATAATGGTAGTCCCGCCTTCCCAGACGACGCCGTTGCGCGGCGGCGGCAGTACTCGTACTCGAATGCCGCCGACCACCACCACAGCGAGGCCGTCGCCGACTGCATCGAGTTCATCAAGAAGAACGCGTATTCCGACGACTACGCCGCGAGCGACAACGGTAGATCGATGGATGCCGGCACCGACATGGCCGGTTGGGTAAAAATTTCGAGTAAT

Protein sequence

PMEKGRRIPRKMKANNPCIPKLRGDATKNKPPSPMGLLERLREALFRFIMLCALSKASNNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAASDNGRSMDAGTDMAGWVKISSN
Homology
BLAST of MS010597 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 80/125 (64.00%), Postives = 87/125 (69.60%), Query Frame = 0

Query: 3   EKGRRIPRKMK-ANNPCIPKLR-GDATK-NKPPSPMGLLERLREALFRFIMLCALSKASN 62
           EK RR+PRK+K   N C+ K R GDA K  KPPSPM L ERLREA+FRFIMLCALSKA+N
Sbjct: 3   EKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKATN 62

Query: 63  NGSPA---FPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAASDNGRSMD 122
           +   A   F DD V RRR +SY N  DHHHSEAVADCIEFIK  AYSDD    D G   D
Sbjct: 63  HHPAAGATFQDDVVVRRR-HSYPN-VDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 122

BLAST of MS010597 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-24
Identity = 72/110 (65.45%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 3   EKGRRIPRKMK-ANNPCIPKLRGDATK--NKPPSPMGLLERLREALFRFIMLCALSKASN 62
           EK RR+PRK+K   N C+ K R D  K  NKPPS M L ERLREA+FRFIMLCALSKA+N
Sbjct: 3   EKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKATN 62

Query: 63  N---GSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDY 107
           +      AF DD V RRR +SY N  DHHHSEAVADCIEFIK  AYSDD+
Sbjct: 63  HHPTAGAAFQDDVVVRRR-HSYPN-VDHHHSEAVADCIEFIKMKAYSDDH 110

BLAST of MS010597 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-22
Identity = 76/123 (61.79%), Postives = 82/123 (66.67%), Query Frame = 0

Query: 3   EKGRRIPRKMKANNPCIPKLRGDATKN-KPPSPMGLLERLREALFRFIMLCALSKASNNG 62
           EK RR+P K         KLRGD  KN K P  M L ERLREA+FRFIMLCALSKA+N+ 
Sbjct: 3   EKTRRVPGK--------AKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHH 62

Query: 63  S--PAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAASDNGRSMDAGT 122
           S    F DD V  RR+ SY N  DHHHSEAVADCIEFIKK AYSDD    D G S+DA  
Sbjct: 63  SAGAVFQDDVV--RRRQSYQN-GDHHHSEAVADCIEFIKKKAYSDDQIILDRG-SVDADD 113

BLAST of MS010597 vs. NCBI nr
Match: KAG6645580.1 (hypothetical protein CIPAW_08G131800, partial [Carya illinoinensis])

HSP 1 Score: 97.8 bits (242), Expect = 7.2e-17
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 0

Query: 2   MEKGRRIPRKMKANNPCIPKLRGDAT----KNKPPSPMGLLERLREALFRFIMLCALSKA 61
           MEK    PRK K ++ CIP+LRG+A      NK  SPM LLER REA+ R IML ALSKA
Sbjct: 1   MEKPTASPRKPKISSLCIPRLRGNAACANKNNKSVSPMTLLERFREAVLRLIMLSALSKA 60

Query: 62  SNNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDD 106
           ++NG+ +  D   A+ R+  Y N  D HHSEAVADCIEFIKK A +D+
Sbjct: 61  TSNGTGSTAD---AQTRRCCYPN--DSHHSEAVADCIEFIKKTASADE 103

BLAST of MS010597 vs. NCBI nr
Match: TKS00259.1 (hypothetical protein D5086_0000184720 [Populus alba])

HSP 1 Score: 97.4 bits (241), Expect = 9.4e-17
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 0

Query: 2   MEKGRRIPRKMKANNPCIPKLRGDAT---KNKPPSPMGLLERLREALFRFIMLCALSKAS 61
           MEKG   P++MK ++ CIP+LR +AT   KN   SPM LLER R+A+FR +ML ALSKA+
Sbjct: 1   MEKGINSPKRMK-SHLCIPRLRVNATCTIKNHRLSPMTLLERFRQAVFRLMMLSALSKAT 60

Query: 62  NNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAA---SDNGRSM 121
           +N + + PD  V ++R   Y   AD HHSEAVADCIEFIKK++ +D       S    S 
Sbjct: 61  HNAAGSSPDHHVMKKRSSYY--PADPHHSEAVADCIEFIKKSSLTDQEEINRDSTASSSF 120

Query: 122 DAGTDMA 123
           DA  +MA
Sbjct: 121 DATGEMA 124

BLAST of MS010597 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 80/125 (64.00%), Postives = 87/125 (69.60%), Query Frame = 0

Query: 3   EKGRRIPRKMK-ANNPCIPKLR-GDATK-NKPPSPMGLLERLREALFRFIMLCALSKASN 62
           EK RR+PRK+K   N C+ K R GDA K  KPPSPM L ERLREA+FRFIMLCALSKA+N
Sbjct: 3   EKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKATN 62

Query: 63  NGSPA---FPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAASDNGRSMD 122
           +   A   F DD V RRR +SY N  DHHHSEAVADCIEFIK  AYSDD    D G   D
Sbjct: 63  HHPAAGATFQDDVVVRRR-HSYPN-VDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 122

BLAST of MS010597 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 72/110 (65.45%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 3   EKGRRIPRKMK-ANNPCIPKLRGDATK--NKPPSPMGLLERLREALFRFIMLCALSKASN 62
           EK RR+PRK+K   N C+ K R D  K  NKPPS M L ERLREA+FRFIMLCALSKA+N
Sbjct: 3   EKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKATN 62

Query: 63  N---GSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDY 107
           +      AF DD V RRR +SY N  DHHHSEAVADCIEFIK  AYSDD+
Sbjct: 63  HHPTAGAAFQDDVVVRRR-HSYPN-VDHHHSEAVADCIEFIKMKAYSDDH 110

BLAST of MS010597 vs. ExPASy TrEMBL
Match: A0A4U5PT50 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 0

Query: 2   MEKGRRIPRKMKANNPCIPKLRGDAT---KNKPPSPMGLLERLREALFRFIMLCALSKAS 61
           MEKG   P++MK ++ CIP+LR +AT   KN   SPM LLER R+A+FR +ML ALSKA+
Sbjct: 1   MEKGINSPKRMK-SHLCIPRLRVNATCTIKNHRLSPMTLLERFRQAVFRLMMLSALSKAT 60

Query: 62  NNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAA---SDNGRSM 121
           +N + + PD  V ++R   Y   AD HHSEAVADCIEFIKK++ +D       S    S 
Sbjct: 61  HNAAGSSPDHHVMKKRSSYY--PADPHHSEAVADCIEFIKKSSLTDQEEINRDSTASSSF 120

Query: 122 DAGTDMA 123
           DA  +MA
Sbjct: 121 DATGEMA 124

BLAST of MS010597 vs. ExPASy TrEMBL
Match: B9MXG5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 2   MEKGRRIPRKMKANNPCIPKLRGDAT---KNKPPSPMGLLERLREALFRFIMLCALSKAS 61
           MEKG   P++MK ++ CIP+LR + T   KN   SPM LLER R+A+FR +ML ALSKA+
Sbjct: 19  MEKGINSPKRMK-SHLCIPRLRVNTTCTIKNHRLSPMTLLERFRQAVFRLMMLSALSKAT 78

Query: 62  NNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSD 105
           +N + + PD  V ++R   Y   AD HHSEAVADCIEFIKK++ +D
Sbjct: 79  HNAAGSSPDHHVMKKRSSYY--PADPHHSEAVADCIEFIKKSSLTD 121

BLAST of MS010597 vs. ExPASy TrEMBL
Match: A0A5C7HUV3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 64/124 (51.61%), Postives = 76/124 (61.29%), Query Frame = 0

Query: 2   MEKGRRIPRKMKANNPCIPKL----RGDATKNKPPSPMGLLERLREALFRFIMLCALSKA 61
           MEK R  PRKMK  N CIP+L         KNK  +P+ LLER REA+FR IML ALSKA
Sbjct: 1   MEKPRGSPRKMK-TNLCIPRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALSKA 60

Query: 62  SNNGSPAFPDDAVARRRQYSYSNAADHHHSEAVADCIEFIKKNAYSDDYAASDNGRSMDA 121
           +N+          + R   SY + AD HHSEAVADCIEFIKK A +DD   ++NGR   A
Sbjct: 61  TND---HHHHTVGSSRVSRSYYSPADPHHSEAVADCIEFIKKKAVADD---NENGRDSSA 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49339.21.1e-2564.00hypothetical protein Csa_003207 [Cucumis sativus][more]
KAA0025678.14.7e-2465.45Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1... [more]
KAG6603914.13.3e-2261.79hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6645580.17.2e-1755.56hypothetical protein CIPAW_08G131800, partial [Carya illinoinensis][more]
TKS00259.19.4e-1750.39hypothetical protein D5086_0000184720 [Populus alba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGN35.4e-2664.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1[more]
A0A5A7SHP02.3e-2465.45Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A4U5PT504.5e-1750.39Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1[more]
B9MXG51.3e-1653.77Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 ... [more]
A0A5C7HUV32.9e-1651.61Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR35111:SF1EXPRESSED PROTEINcoord: 10..117
NoneNo IPR availablePANTHERPTHR35111F10A5.9-RELATEDcoord: 10..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010597.1MS010597.1mRNA